Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.5e-125 452.2 247 100.0
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.1e-104 383.6 247 83.8
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 8.2e-100 367.5 225 82.7
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.2e-90 337.0 227 75.8
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.5e-80 303.5 225 68.0
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.2e-80 302.0 225 67.6
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 8.0e-79 297.7 219 68.5
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.0e-78 295.8 225 66.7
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 4.0e-78 295.4 219 67.6
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 5.2e-78 295.0 221 67.4
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.2e-78 295.0 225 66.2
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.2e-78 295.0 225 66.2
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 6.8e-78 294.7 219 67.1
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 6.8e-78 294.7 221 67.4
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 8.9e-78 294.3 226 69.0
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-77 293.9 219 67.6
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-77 293.9 219 67.6
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 2.0e-77 293.1 225 65.8
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.0e-77 293.1 225 65.8
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 3.4e-77 292.4 223 66.4
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.4e-77 292.4 224 69.6
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.4e-77 292.0 221 66.5
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 5.7e-77 291.6 219 65.3
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 7.5e-77 291.2 244 61.1
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 7.5e-77 291.2 225 64.0
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 7.5e-77 291.2 225 65.3
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.8e-77 290.8 225 65.3
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 9.8e-77 290.8 219 67.6
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.7e-76 290.0 247 65.2
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.9e-76 289.3 219 66.2
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.9e-76 289.3 225 64.9
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 2.9e-76 289.3 219 65.8
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 6.3e-76 288.1 219 64.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 1.4e-75 287.0 200 69.0
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.4e-75 287.0 221 64.3
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.8e-75 286.6 225 64.4
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 2.4e-75 286.2 226 64.2
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 4.1e-75 285.4 223 64.6
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 5.4e-75 285.0 247 64.0
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.4e-75 285.0 225 64.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 9.2e-75 284.3 218 65.1
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 1.2e-74 283.9 225 66.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.6e-74 283.5 226 61.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.5e-74 282.3 206 68.0
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.3e-73 280.4 200 67.5
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.3e-73 280.4 223 63.2
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.3e-73 280.4 225 64.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.7e-73 280.0 225 63.6
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.9e-73 279.3 200 67.5
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 3.9e-73 278.9 222 64.0
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 3.9e-73 278.9 222 64.0
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.0e-73 278.5 206 68.0
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 6.6e-73 278.1 221 65.6
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.5e-72 276.9 225 62.7
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.9e-72 276.6 225 63.1
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.5e-72 276.2 200 66.5
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 3.3e-72 275.8 219 63.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 4.3e-72 275.4 200 66.5
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 5.6e-72 275.0 225 64.0
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.6e-72 275.0 225 61.8
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.6e-72 275.0 225 61.8
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 9.5e-72 274.2 219 63.0
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.6e-71 273.5 225 61.3
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 2.1e-71 273.1 219 62.6
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 2.1e-71 273.1 205 68.8
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.1e-71 273.1 219 64.4
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 4.7e-71 271.9 219 63.0
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 4.7e-71 271.9 219 62.6
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 4.7e-71 271.9 229 62.9
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.0e-70 270.8 201 67.2
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.0e-70 270.8 225 63.6
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.0e-70 270.8 210 64.3
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.0e-70 270.8 201 66.7
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 3.1e-70 269.2 205 63.9
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 6.8e-70 268.1 223 61.4
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 6.8e-70 268.1 201 65.7
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 8.9e-70 267.7 210 64.3
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.6e-69 266.2 223 64.1
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.4e-69 265.8 201 65.2
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.7e-68 263.5 200 63.5
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.7e-68 263.5 215 60.5
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.2e-68 263.1 200 64.5
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 2.2e-68 263.1 199 64.3
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.9e-68 262.7 199 64.3
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 4.9e-68 261.9 200 64.0
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.4e-68 261.5 219 60.7
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.1e-67 260.8 208 63.0
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.4e-67 260.4 200 65.0
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 9.2e-67 257.7 222 57.7
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 9.2e-67 257.7 203 62.6
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.7e-66 256.1 225 60.4
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.5e-66 255.8 223 60.1
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 3.5e-66 255.8 197 65.0
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 6.0e-66 255.0 225 60.0
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 6.0e-66 255.0 225 60.0
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 6.0e-66 255.0 225 60.0
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 6.0e-66 255.0 194 63.4
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.0e-65 254.2 223 59.2
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.3e-65 253.1 225 60.0
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 5.0e-65 251.9 223 59.2
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.5e-64 249.6 227 58.1
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.6e-64 248.4 225 58.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.6e-64 248.4 225 58.2
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 5.6e-64 248.4 192 65.6
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 5.6e-64 248.4 225 58.2
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 9.5e-64 247.7 225 57.8
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 9.5e-64 247.7 225 58.2
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-63 247.3 225 57.8
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 2.1e-63 246.5 225 57.8
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 3.6e-63 245.7 225 58.2
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.1e-63 244.6 227 56.4
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 2.3e-62 243.0 226 57.5
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 4.0e-62 242.3 195 64.1
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 5.2e-62 241.9 197 59.9
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 5.2e-62 241.9 218 56.0
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.8e-62 241.5 197 59.9
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.5e-61 240.4 195 63.6
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 5.8e-61 238.4 213 58.7
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.4e-59 233.8 197 59.4
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.2e-58 230.7 215 54.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 3.5e-58 229.2 222 55.4
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.6e-58 228.8 200 59.0
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-57 227.6 205 58.5
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.0e-53 213.4 220 52.7
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.9e-52 209.5 153 66.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 4.9e-52 208.8 219 55.3
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 6.4e-52 208.4 176 62.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.4e-51 207.2 227 52.9
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.4e-51 207.2 174 61.5
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 7.3e-48 194.9 182 54.4
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.1e-43 178.3 112 72.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.0e-41 174.5 131 62.6
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 3.0e-41 172.9 201 48.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 3.4e-37 159.5 118 65.3
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 9.9e-37 157.9 208 45.7
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 3.8e-36 156.0 135 60.7
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.4e-35 154.1 112 66.1
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.6e-34 149.1 112 64.3
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.8e-17 94.0 115 47.0
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 3.2e-11 73.2 51 58.8
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.4e-06 57.0 75 36.0
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.4e-06 57.0 75 36.0


User provided reference genes

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