Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 2.7e-97 358.6 177 100.0
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.2e-60 236.9 120 97.5
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 1.2e-60 236.9 120 97.5
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.3e-59 233.4 120 94.2
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.7e-59 233.0 120 95.0
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 7.1e-53 211.1 111 88.3
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 7.1e-53 211.1 111 88.3
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 9.2e-53 210.7 111 88.3
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 9.2e-53 210.7 111 87.4
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 1.6e-52 209.9 112 85.7
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 4.6e-52 208.4 112 83.9
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 7.8e-52 207.6 112 85.7
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 1.0e-51 207.2 111 86.5
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 1.7e-51 206.5 111 84.7
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 2.3e-51 206.1 112 86.6
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 3.9e-51 205.3 112 83.0
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 5.1e-51 204.9 111 83.8
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 6.6e-51 204.5 112 83.9
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 1.9e-50 203.0 112 83.0
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 1.9e-50 203.0 118 79.7
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 3.3e-50 202.2 112 83.9
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 3.3e-50 202.2 112 83.0
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 3.3e-50 202.2 111 82.9
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 4.3e-50 201.8 112 83.0
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 9.6e-50 200.7 112 83.0
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 1.2e-49 200.3 111 82.0
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 2.1e-49 199.5 112 82.1
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.8e-49 199.1 112 83.0
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 2.8e-49 199.1 113 80.5
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.6e-49 198.7 117 78.6
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 4.7e-49 198.4 117 78.6
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 4.7e-49 198.4 112 81.2
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 6.2e-49 198.0 110 83.6
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.2e-49 198.0 117 77.8
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 6.2e-49 198.0 112 81.2
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.4e-48 196.8 112 81.2
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.8e-48 196.4 111 82.0
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 1.8e-48 196.4 114 78.9
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.4e-48 196.1 112 80.4
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.4e-48 196.1 117 76.9
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 2.4e-48 196.1 111 81.1
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 4.0e-48 195.3 112 81.2
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 5.2e-48 194.9 111 81.1
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 2.0e-47 193.0 112 79.5
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.0e-47 193.0 112 78.6
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.4e-47 192.2 120 75.0
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 4.4e-47 191.8 111 79.3
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.7e-46 189.9 112 78.6
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.7e-46 189.9 114 78.9
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 2.2e-46 189.5 111 79.3
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 2.2e-46 189.5 114 76.3
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 2.9e-46 189.1 112 78.6
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 3.8e-46 188.7 111 78.4
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 3.8e-46 188.7 111 78.4
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 4.9e-46 188.3 111 76.6
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 4.9e-46 188.3 112 78.6
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 4.9e-46 188.3 112 78.6
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 8.4e-46 187.6 111 76.6
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.1e-45 187.2 114 72.8
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.4e-45 186.8 111 75.7
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.4e-45 186.8 111 75.7
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 1.4e-45 186.8 112 78.6
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.4e-45 186.8 111 78.4
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 1.9e-45 186.4 111 77.5
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 2.4e-45 186.0 111 75.7
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.4e-45 186.0 109 77.1
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 2.4e-45 186.0 111 74.8
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 3.2e-45 185.7 111 75.7
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 3.2e-45 185.7 112 77.7
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 4.2e-45 185.3 109 77.1
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 4.2e-45 185.3 112 76.8
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 4.2e-45 185.3 113 77.0
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 5.4e-45 184.9 112 76.8
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 7.1e-45 184.5 111 77.5
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 9.3e-45 184.1 112 77.7
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 9.3e-45 184.1 112 77.7
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 9.3e-45 184.1 111 78.4
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.2e-44 183.7 111 74.8
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 2.7e-44 182.6 111 76.6
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 3.5e-44 182.2 109 74.3
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 7.8e-44 181.0 111 74.8
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 1.7e-43 179.9 112 75.0
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 3.0e-43 179.1 121 68.6
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 3.0e-43 179.1 112 75.0
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 3.9e-43 178.7 111 73.0
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 3.9e-43 178.7 111 73.0
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 5.1e-43 178.3 112 75.9
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 8.7e-43 177.6 132 65.2
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 8.7e-43 177.6 112 75.0
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.5e-42 176.8 110 73.6
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 4.3e-42 175.3 114 70.2
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 5.6e-42 174.9 112 74.1
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 1.3e-41 173.7 113 72.6
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.6e-41 173.3 126 63.5
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 4.8e-41 171.8 113 71.7
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.1e-40 170.6 136 64.0
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 1.4e-40 170.2 111 70.3
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 4.0e-40 168.7 107 73.8
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 5.3e-40 168.3 98 75.5
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 1.5e-39 166.8 111 69.4
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 5.8e-39 164.9 107 72.9
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 1.7e-38 163.3 109 70.6
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 8.4e-38 161.0 96 76.0
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 6.0e-36 154.8 81 84.0
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 6.0e-36 154.8 112 63.4
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 2.3e-35 152.9 110 64.5
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 9.6e-34 147.5 117 60.7
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 2.1e-33 146.4 107 66.4
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.1e-32 144.1 82 75.6
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.8e-32 143.3 130 56.2
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 4.0e-32 142.1 82 75.6
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 5.8e-31 138.3 87 77.0
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 2.2e-30 136.3 84 78.6
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.9e-30 136.0 113 56.6
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 3.8e-30 135.6 175 44.6
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 8.4e-30 134.4 119 52.9
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.9e-29 133.3 88 70.5
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 4.6e-28 128.6 75 80.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 4.6e-28 128.6 75 80.0
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 4.6e-28 128.6 70 87.1
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 4.3e-26 122.1 70 82.9
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 5.6e-26 121.7 67 82.1
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 7.4e-26 121.3 72 73.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 4.8e-25 118.6 106 50.9
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 1.5e-23 113.6 72 69.4
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 2.6e-23 112.8 117 48.7
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.2e-21 105.9 55 81.8
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.1e-20 103.2 82 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 1.0e-19 100.9 144 36.1
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 8.7e-19 97.8 61 75.4
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 5.7e-18 95.1 55 76.4
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 9.0e-16 87.8 52 78.8
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 6.5e-14 81.6 43 81.4
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 9.3e-13 77.8 48 77.1
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.6e-09 67.0 60 55.0
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 5.3e-08 62.0 38 71.1
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 6.9e-08 61.6 54 51.9


User provided reference genes

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