Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G002580 Citrullus lanatus HOM05D000001 ORTHO05D023344 5.6e-46 187.2 90 100.0
MELO3C018714.2 Cucumis melo HOM05D000001 ORTHO05D009069 1.6e-29 132.5 85 78.8
Actinidia24407 Actinidia chinensis HOM05D000001 ORTHO05D009069 7.3e-14 80.5 73 54.8
GSVIVG01020758001 Vitis vinifera HOM05D000001 ORTHO05D009069 1.8e-12 75.9 72 54.2
Prupe.3G112800 Prunus persica HOM05D000001 ORTHO05D009069 4.0e-12 74.7 86 45.3
MD17G1263700 Malus domestica HOM05D000001 ORTHO05D009069 6.9e-12 73.9 71 50.7
TAR624G0079 Trochodendron aralioides HOM05D000001 ORTHO05D009069 6.9e-12 73.9 92 42.4
CSS0044582 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D023344 1.2e-11 73.2 73 52.1
TWI59G1152 Tripterygium wilfordii HOM05D000001 ORTHO05D009069 1.2e-11 73.2 86 41.9
Actinidia11168 Actinidia chinensis HOM05D000001 ORTHO05D023344 2.0e-11 72.4 72 54.2
CSS0026444 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009069 3.4e-11 71.6 71 52.1
CSS0033697 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009069 3.4e-11 71.6 71 52.1
CSS0000998 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009069 7.6e-11 70.5 65 53.8
CSS0009847 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D023344 7.6e-11 70.5 73 50.7
Ciclev10017576m.g Citrus clementina HOM05D000001 ORTHO05D009069 7.6e-11 70.5 54 61.1
AUR62024044 Chenopodium quinoa HOM05D000001 ORTHO05D009069 9.9e-11 70.1 78 42.3
Gohir.D11G139100 Gossypium hirsutum HOM05D000001 ORTHO05D009069 9.9e-11 70.1 78 46.2
Psat7g088960 Pisum sativum HOM05D000001 ORTHO05D009069 1.3e-10 69.7 75 45.3
Sc21g0004010 Simmondsia chinensis HOM05D000001 ORTHO05D009069 1.3e-10 69.7 87 42.5
CSS0046115 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009069 1.7e-10 69.3 65 53.8
Ciclev10018004m.g Citrus clementina HOM05D000001 ORTHO05D009069 1.7e-10 69.3 54 59.3
RcHm_v2.0_Chr2g0131051 Rosa chinensis HOM05D000001 ORTHO05D009069 1.7e-10 69.3 53 54.7
FvH4_6g27771 Fragaria vesca HOM05D000001 ORTHO05D009069 2.9e-10 68.6 59 50.8
Gohir.A11G133000 Gossypium hirsutum HOM05D000001 ORTHO05D009069 2.9e-10 68.6 78 44.9
Gorai.007G149300 Gossypium raimondii HOM05D000001 ORTHO05D009069 2.9e-10 68.6 78 44.9
QL08p042505 Quercus lobata HOM05D000001 ORTHO05D009069 2.9e-10 68.6 63 52.4
Solyc07g055310.1 Solanum lycopersicum HOM05D000001 ORTHO05D009069 2.9e-10 68.6 71 45.1
Ah.01g004880 Amaranthus hybridus HOM05D000001 ORTHO05D009069 3.8e-10 68.2 64 51.6
Cpa.g.sc52.150 Carica papaya HOM05D000001 ORTHO05D009069 3.8e-10 68.2 66 45.5
Lj1P675T38 Lonicera japonica HOM05D000001 ORTHO05D009069 3.8e-10 68.2 73 47.9
FAN05G1295 Fragaria x ananassa HOM05D000001 ORTHO05D009069 4.9e-10 67.8 59 50.8
CSS0017768 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D023344 8.4e-10 67.0 65 52.3
THA.LOC104825049 Tarenaya hassleriana HOM05D000001 ORTHO05D009069 8.4e-10 67.0 66 47.0
Ca_18252_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009069 1.1e-09 66.6 56 50.0
PGR042G0203 Punica granatum HOM05D000001 ORTHO05D009069 1.1e-09 66.6 68 48.5
Thecc.02G213900 Theobroma cacao HOM05D000001 ORTHO05D009069 1.1e-09 66.6 51 60.8
PGSC0003DMG400017310 Solanum tuberosum HOM05D000001 ORTHO05D009069 1.4e-09 66.2 71 43.7
arahy.Tifrunner.gnm1.ann1.56LW6D Arachis hypogaea HOM05D000001 ORTHO05D009069 2.4e-09 65.5 56 51.8
Duzib138G1306 Durio zibethinus HOM05D000001 ORTHO05D009069 2.4e-09 65.5 90 47.8
Phvul.002G191000 Phaseolus vulgaris HOM05D000001 ORTHO05D009069 2.4e-09 65.5 52 48.1
Sopen07g026910 Solanum pennellii HOM05D000001 ORTHO05D009069 2.4e-09 65.5 71 43.7
Glyma.08G086500 Glycine max HOM05D000001 ORTHO05D009069 4.2e-09 64.7 52 51.9
Oeu036702.1 Olea europaea HOM05D000001 ORTHO05D009069 4.2e-09 64.7 74 41.9
CAN.G1360.10 Capsicum annuum HOM05D000001 ORTHO05D009069 5.4e-09 64.3 71 43.7
vmacro04255 Vaccinium macrocarpon HOM05D000001 ORTHO05D009069 5.4e-09 64.3 75 45.3
VMungo1383G2441 Vigna mungo HOM05D000001 ORTHO05D009069 7.1e-09 63.9 52 50.0
Medtr4g094645 Medicago truncatula HOM05D000001 ORTHO05D009069 9.3e-09 63.5 56 51.8
Atru.BG.170.p Acer truncatum HOM05D000001 ORTHO05D009069 1.2e-08 63.2 51 58.8
Lsat_1_v5_gn_3_111421 Lactuca sativa HOM05D000001 ORTHO05D009069 1.2e-08 63.2 70 44.3
Atru.BG.37.p Acer truncatum HOM05D000001 ORTHO05D009069 2.1e-08 62.4 50 56.0
CSS0024686 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009069 2.1e-08 62.4 71 47.9
CANSAT64G1971 Cannabis sativa HOM05D000001 ORTHO05D009069 2.1e-08 62.4 64 48.4
Lj4g0016764 Lotus japonicus HOM05D000001 ORTHO05D009069 2.7e-08 62.0 58 46.6
Medtr4g094658 Medicago truncatula HOM05D000001 ORTHO05D009069 2.7e-08 62.0 72 44.4
Potri.016G075000 Populus trichocarpa HOM05D000001 ORTHO05D009069 2.7e-08 62.0 67 47.8
Sabra16G0077600 Salix brachista HOM05D000001 ORTHO05D009069 2.7e-08 62.0 67 47.8
Manes.06G077300 Manihot esculenta HOM05D000001 ORTHO05D009069 4.6e-08 61.2 69 44.9
Sabra16G0080500 Salix brachista HOM05D000001 ORTHO05D009069 7.8e-08 60.5 67 47.8
Haze_04991 Corylus avellana HOM05D000001 ORTHO05D009069 1.0e-07 60.1 52 46.2
Thhalv10017967m.g Eutrema salsugineum HOM05D000001 ORTHO05D009069 1.0e-07 60.1 68 45.6
Glyma.05G131932 Glycine max HOM05D000001 ORTHO05D009069 1.3e-07 59.7 52 48.1
Lalb_Chr08g0236411 Lupinus albus HOM05D000001 ORTHO05D009069 1.7e-07 59.3 52 48.1
Nn8g39300 Nelumbo nucifera HOM05D000001 ORTHO05D009069 1.7e-07 59.3 65 47.7
SHI05837 Sapria himalayana HOM05D000001 ORTHO05D000003 6.6e-07 57.4 54 48.1
Rhsim06G0127800 Rhododendron simsii HOM05D000001 ORTHO05D009069 1.9e-06 55.8 76 39.5
ECA240G0345 Erigeron canadensis HOM05D000001 ORTHO05D009069 2.5e-06 55.5 66 39.4
DCAR_019688 Daucus carota HOM05D000053 ORTHO05D009069 7.3e-06 53.9 75 32.0


User provided reference genes

Program Settings