Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 4.9e-258 894.0 479 100.0
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.4e-234 813.5 479 88.3
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 5.7e-230 800.8 479 88.3
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.1e-193 680.2 510 73.1
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 6.0e-131 471.9 512 56.1
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.3e-130 469.9 512 55.9
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.4e-127 460.7 488 54.1
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 5.3e-127 458.8 491 54.4
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 6.9e-127 458.4 488 53.9
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 9.0e-127 458.0 511 54.6
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.5e-126 455.7 488 53.7
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.4e-124 450.7 495 54.3
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.4e-124 449.9 490 54.1
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 7.1e-124 448.4 489 54.0
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 9.3e-124 448.0 487 54.4
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 5.1e-122 442.2 510 54.7
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 3.3e-121 439.5 509 53.0
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.3e-121 439.1 533 50.8
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 5.6e-121 438.7 503 50.7
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 5.6e-121 438.7 483 54.5
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 5.6e-121 438.7 503 51.1
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.1e-120 436.8 499 52.1
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 3.7e-120 436.0 491 53.2
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.8e-119 433.7 499 51.7
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.8e-119 433.7 483 54.0
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 9.0e-119 431.4 508 51.6
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.6e-118 429.9 483 53.8
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 3.4e-118 429.5 483 53.8
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.3e-117 427.6 486 51.2
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.8e-117 426.0 483 53.2
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.8e-117 426.0 503 51.9
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.4e-116 424.1 493 50.9
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 4.2e-116 422.5 525 50.1
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.7e-115 419.9 494 50.6
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 2.7e-115 419.9 511 51.1
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 3.5e-115 419.5 486 51.4
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.0e-114 417.9 489 49.9
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.0e-114 417.9 542 51.7
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.8e-114 417.2 495 50.9
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.9e-114 416.0 489 53.4
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.1e-113 414.5 495 50.3
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.9e-113 413.7 496 49.8
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 5.7e-113 412.1 490 53.5
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.8e-112 409.8 489 49.3
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.8e-112 409.8 486 50.6
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 8.2e-112 408.3 492 50.8
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 3.1e-111 406.4 506 49.4
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 3.1e-111 406.4 501 50.1
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 9.0e-111 404.8 506 50.2
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.4e-110 402.9 493 50.5
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 3.4e-110 402.9 485 51.1
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 4.5e-110 402.5 501 50.1
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 5.9e-110 402.1 537 47.1
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 5.9e-110 402.1 537 47.1
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 7.6e-110 401.7 506 50.4
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 7.6e-110 401.7 485 52.0
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.8e-109 399.4 498 49.4
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 6.5e-109 398.7 483 51.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 6.5e-109 398.7 483 51.1
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.1e-108 397.9 485 50.3
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.4e-108 397.5 496 48.2
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.4e-108 397.5 498 49.6
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.9e-108 397.1 522 48.3
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.5e-108 396.7 484 48.6
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 4.2e-108 396.0 483 50.7
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 4.2e-108 396.0 415 54.0
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 9.3e-108 394.8 502 47.6
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 7.9e-107 391.7 489 52.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.3e-106 391.0 488 48.2
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 5.1e-106 389.0 503 47.7
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.5e-105 387.5 538 45.7
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.9e-105 387.1 499 46.3
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 4.3e-105 386.0 486 47.1
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.8e-104 383.3 507 47.9
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 2.8e-104 383.3 481 50.3
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.4e-103 380.2 490 47.3
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.2e-102 377.9 408 50.5
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.2e-102 377.9 408 50.5
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 4.5e-102 375.9 487 47.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.2e-101 373.6 456 48.2
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 5.5e-100 369.0 494 45.7
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.2e-99 367.9 466 48.3
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 7.9e-99 365.2 495 46.7
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.3e-98 363.6 506 46.8
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 3.9e-98 362.8 527 44.2
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 6.7e-98 362.1 409 51.1
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 3.7e-96 356.3 392 53.1
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 3.7e-96 356.3 494 46.4
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.8e-95 354.0 528 43.2
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 5.3e-95 352.4 378 53.7
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.2e-94 351.3 348 57.2
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.0e-93 348.2 484 45.7
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 2.2e-93 347.1 493 44.4
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 3.8e-93 346.3 502 44.8
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 3.8e-93 346.3 479 46.8
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 2.5e-92 343.6 455 45.5
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 7.2e-92 342.0 484 45.5
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.4e-90 337.8 485 44.5
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.1e-87 325.1 482 42.9
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 4.7e-83 312.8 488 44.5
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.7e-83 312.8 477 42.6
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 6.1e-83 312.4 466 45.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.3e-82 310.5 479 41.3
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.0e-81 307.4 479 42.4
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.8e-80 303.5 480 42.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 6.5e-77 292.4 566 37.8
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.5e-77 292.0 453 41.7
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 2.1e-75 287.3 481 40.5
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 4.8e-72 276.2 479 39.0
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 3.1e-71 273.5 419 43.4
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.1e-71 273.5 333 49.8
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.3e-69 268.1 356 44.4
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 3.2e-68 263.5 416 41.8
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.2e-65 255.0 492 39.2
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.6e-65 253.8 488 37.5
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 3.1e-63 246.9 480 37.9
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.3e-61 240.7 451 39.0
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.4e-57 226.5 380 39.2
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 6.4e-56 222.6 499 35.3
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 5.9e-54 216.1 416 36.3
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.3e-53 214.9 741 28.1
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.2e-51 208.4 492 33.7
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.8e-43 180.6 218 49.5
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.2e-41 175.3 217 47.5
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.1e-39 168.7 674 27.0
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.4e-39 168.3 220 47.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.5e-38 163.7 411 33.1
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.5e-36 158.3 216 42.6
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 9.5e-36 155.6 489 29.0
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.2e-35 155.2 378 32.8
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 1.7e-29 134.8 217 44.2
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 3.9e-29 133.7 116 60.3
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 5.1e-29 133.3 627 25.7
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 5.2e-26 123.2 626 24.1
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 2.0e-25 121.3 218 39.9
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 3.2e-23 114.0 213 36.6
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.9e-21 107.1 220 34.5
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 3.9e-21 107.1 194 36.1
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 6.6e-21 106.3 74 63.5
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.5e-20 105.1 520 25.0
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.3e-19 102.1 214 32.7
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 3.1e-18 97.4 166 36.7
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 2.0e-17 94.7 146 37.0
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.2e-16 91.3 149 37.6
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.9e-16 90.9 155 34.8
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.8e-16 90.5 214 29.0
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 4.9e-16 90.1 128 39.8
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.1e-15 89.0 160 41.9
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.2e-14 85.5 233 31.8
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 6.0e-14 83.2 568 22.5
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 3.9e-13 80.5 298 26.2
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 3.9e-13 80.5 182 33.5
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 7.6e-09 66.2 47 61.7
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 2.2e-08 64.7 125 42.4
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 6.4e-08 63.2 123 40.7
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.2e-07 60.8 95 41.1
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 3.2e-07 60.8 127 31.5
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 3.2e-07 60.8 113 30.1
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 5.5e-07 60.1 77 41.6
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 5.5e-07 60.1 96 36.5
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 7.1e-07 59.7 113 29.2
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 9.3e-07 59.3 95 34.7
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 1.2e-06 58.9 154 32.5
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 1.2e-06 58.9 106 32.1
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 1.6e-06 58.5 95 33.7
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 1.6e-06 58.5 95 33.7
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 1.6e-06 58.5 104 34.6
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 2.1e-06 58.2 95 33.7
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 2.1e-06 58.2 95 33.7
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 2.1e-06 58.2 137 29.2
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 2.1e-06 58.2 110 31.8
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 2.7e-06 57.8 95 34.7
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 2.7e-06 57.8 124 33.9
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 2.7e-06 57.8 131 31.3
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 6.0e-06 56.6 162 28.4
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 7.9e-06 56.2 89 36.0


User provided reference genes

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