Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G002420 Citrullus lanatus HOM05D007498 ORTHO05D009384 7.6e-206 720.3 376 100.0
CsaV3_6G037690 Cucumis sativus L. HOM05D007498 ORTHO05D009384 6.8e-154 547.7 391 77.2
MELO3C014431.2 Cucumis melo HOM05D007498 ORTHO05D009384 5.4e-143 511.5 410 72.0
Sed0020195 Sechium edule HOM05D007498 ORTHO05D009384 2.0e-137 493.0 390 69.0
QL08p030918 Quercus lobata HOM05D007498 ORTHO05D009384 4.2e-103 379.0 389 56.0
CiPaw.03G155900 Carya illinoinensis HOM05D007498 ORTHO05D009384 1.0e-101 374.4 387 55.8
TWI18G0826 Tripterygium wilfordii HOM05D007498 ORTHO05D009384 1.0e-101 374.4 393 53.4
Dinv08726 Davidia involucrata HOM05D007498 ORTHO05D009384 1.5e-97 360.5 390 53.6
Prupe.3G211200 Prunus persica HOM05D007498 ORTHO05D009384 2.6e-97 359.8 391 51.9
CANSAT64G1398 Cannabis sativa HOM05D007498 ORTHO05D009384 3.4e-97 359.4 390 53.8
MD17G1103400 Malus domestica HOM05D007498 ORTHO05D009384 3.4e-97 359.4 390 52.6
TAR629G3061 Trochodendron aralioides HOM05D007498 ORTHO05D009384 1.4e-95 354.0 394 51.3
Manes.12G070200 Manihot esculenta HOM05D007498 ORTHO05D009384 5.5e-95 352.1 397 51.4
Thecc.01G181300 Theobroma cacao HOM05D007498 ORTHO05D009384 5.5e-95 352.1 396 52.0
CSS0038240 Camellia sinensis var. sinensis HOM05D007498 ORTHO05D009384 2.1e-94 350.1 383 53.3
RcHm_v2.0_Chr2g0158311 Rosa chinensis HOM05D007498 ORTHO05D009384 1.3e-93 347.4 393 51.9
FvH4_6g42420 Fragaria vesca HOM05D007498 ORTHO05D009384 5.1e-93 345.5 388 50.8
FAN05G5059 Fragaria x ananassa HOM05D007498 ORTHO05D009384 3.3e-92 342.8 389 51.4
Hma1.2p1_2381F.1_g320980 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 7.4e-92 341.7 387 51.9
GSVIVG01030496001 Vitis vinifera HOM05D007498 ORTHO05D009384 7.4e-92 341.7 381 53.3
Hma1.2p1_0445F.1_g154420 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 1.3e-91 340.9 387 51.7
Actinidia09741 Actinidia chinensis HOM05D007498 ORTHO05D009384 2.8e-91 339.7 383 53.3
COL.COLO4_21864 Corchorus olitorius HOM05D007498 ORTHO05D009384 4.8e-91 339.0 395 49.6
Ciclev10015493m.g Citrus clementina HOM05D007498 ORTHO05D009384 6.2e-91 338.6 394 50.5
Medtr3g080260 Medicago truncatula HOM05D007498 ORTHO05D009384 3.4e-89 332.8 404 48.5
Rhsim09G0054300 Rhododendron simsii HOM05D007498 ORTHO05D009384 5.8e-89 332.0 431 48.0
Rhsim06G0166900 Rhododendron simsii HOM05D007498 ORTHO05D009384 1.0e-88 331.3 431 48.0
Sabra14G0119400 Salix brachista HOM05D007498 ORTHO05D009384 1.0e-88 331.3 421 49.6
Actinidia13735 Actinidia chinensis HOM05D007498 ORTHO05D009384 2.2e-88 330.1 383 51.7
Eucgr.A01096 Eucalyptus grandis HOM05D007498 ORTHO05D009384 2.2e-88 330.1 399 50.4
Gohir.A07G187000 Gossypium hirsutum HOM05D007498 ORTHO05D009384 6.5e-88 328.6 393 48.9
Lj6g0022389 Lotus japonicus HOM05D007498 ORTHO05D009384 8.4e-88 328.2 401 49.4
HanXRQChr12g0373631 Helianthus annuus HOM05D007498 ORTHO05D009384 3.2e-87 326.2 385 49.6
Gorai.001G216600 Gossypium raimondii HOM05D007498 ORTHO05D009384 4.2e-87 325.9 395 48.9
Nn1g03383 Nelumbo nucifera HOM05D007498 ORTHO05D009384 1.2e-86 324.3 382 48.4
Nitab4.5_0006063g0010 Nicotiana tabacum HOM05D007498 ORTHO05D009384 2.1e-86 323.6 369 50.1
Phvul.006G012811 Phaseolus vulgaris HOM05D007498 ORTHO05D009384 1.0e-85 321.2 394 48.2
Sopen05g026100 Solanum pennellii HOM05D007498 ORTHO05D009384 1.5e-84 317.4 355 50.4
THA.LOC104815344 Tarenaya hassleriana HOM05D007498 ORTHO05D009384 1.5e-84 317.4 400 48.5
TPR.G34497 Trifolium pratense HOM05D007498 ORTHO05D009384 4.3e-84 315.8 404 45.0
Cc05_g03070 Coffea canephora HOM05D007498 ORTHO05D009384 3.7e-83 312.8 369 49.6
Aqoxy1G04193 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 4.8e-83 312.4 368 47.6
Sc21g0001170 Simmondsia chinensis HOM05D007498 ORTHO05D009384 6.3e-83 312.0 382 48.4
Solyc05g042050.4 Solanum lycopersicum HOM05D007498 ORTHO05D009384 8.2e-83 311.6 358 50.3
Sp3g24210 Schrenkiella parvula HOM05D007498 ORTHO05D009384 1.1e-82 311.2 361 51.0
Aa31LG8G11370 Aethionema arabicum HOM05D007498 ORTHO05D009384 4.1e-82 309.3 402 47.0
AL3G43270 Arabidopsis lyrata HOM05D007498 ORTHO05D009384 4.1e-82 309.3 390 48.7
Lsat_1_v5_gn_5_123880 Lactuca sativa HOM05D007498 ORTHO05D009384 4.1e-82 309.3 392 46.9
vmacro12166 Vaccinium macrocarpon HOM05D007498 ORTHO05D009384 4.1e-82 309.3 460 43.5
Gorai.001G095600 Gossypium raimondii HOM05D007498 ORTHO05D009384 5.3e-82 308.9 394 49.5
MBI19_g41387_MAGBIO Magnolia biondii HOM05D007498 ORTHO05D009384 2.0e-81 307.0 367 48.2
PSO541G2474 Papaver somniferum HOM05D007498 ORTHO05D009384 3.4e-81 306.2 384 46.1
AT2G05755 Arabidopsis thaliana HOM05D007498 ORTHO05D009384 4.5e-81 305.8 361 50.1
CARHR103340 Cardamine hirsuta HOM05D007498 ORTHO05D009384 5.9e-81 305.4 393 47.8
PGR042G1731 Punica granatum HOM05D007498 ORTHO05D009384 5.9e-81 305.4 391 48.6
Carub.0003s2696 Capsella rubella HOM05D007498 ORTHO05D009384 7.6e-81 305.1 387 47.3
A03p44690 Brassica napus HOM05D007498 ORTHO05D009384 2.2e-80 303.5 392 48.0
C03p55520 Brassica napus HOM05D007498 ORTHO05D009384 2.9e-80 303.1 390 48.2
Nitab4.5_0000019g0370 Nicotiana tabacum HOM05D007498 ORTHO05D009384 5.0e-80 302.4 354 50.8
PSO675G1300 Papaver somniferum HOM05D007498 ORTHO05D009384 6.5e-80 302.0 413 44.3
BcaC01g03153 Brassica carinata HOM05D007498 ORTHO05D009384 8.4e-80 301.6 390 47.9
BcaB08g34508 Brassica carinata HOM05D007498 ORTHO05D009384 4.2e-79 299.3 390 47.9
Lj1A780G53 Lonicera japonica HOM05D007498 ORTHO05D009384 7.2e-79 298.5 384 46.9
Peaxi162Scf00100g01524 Petunia axillaris HOM05D007498 ORTHO05D009384 2.7e-78 296.6 398 47.0
BolC3t17828H Brassica oleracea HOM05D000228 ORTHO05D001122 1.0e-77 294.7 403 46.7
BraA03t13603Z Brassica rapa HOM05D007498 ORTHO05D009384 2.3e-77 293.5 409 45.2
MD09G1113300 Malus domestica HOM05D007498 ORTHO05D009384 8.2e-75 285.0 332 49.4
Lsat_1_v5_gn_7_95281 Lactuca sativa HOM05D007498 ORTHO05D009384 9.0e-74 281.6 359 44.0
ATR0059G023 Amborella trichopoda HOM05D007498 ORTHO05D009384 3.4e-73 279.6 364 45.1
Gohir.D07G193500 Gossypium hirsutum HOM05D007498 ORTHO05D009384 2.7e-70 270.0 314 49.7
Duzib138G1101 Durio zibethinus HOM05D007498 ORTHO05D009384 1.5e-68 264.2 380 45.8
Potri.014G157700 Populus trichocarpa HOM05D007498 ORTHO05D009384 1.4e-66 257.7 232 62.1
Psat5g106880 Pisum sativum HOM05D007498 ORTHO05D009384 2.7e-62 243.4 250 54.4
Thhalv10002583m.g Eutrema salsugineum HOM05D007498 ORTHO05D009384 1.8e-61 240.7 389 42.7
FAN09G2551 Fragaria x ananassa HOM05D007498 ORTHO05D009384 2.4e-58 230.3 246 50.8
ECA234G3795 Erigeron canadensis HOM05D007498 ORTHO05D009384 1.9e-55 220.7 220 55.0
Aqoxy1G02942 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 3.6e-54 216.5 237 51.1
FAN14G0249 Fragaria x ananassa HOM05D007498 ORTHO05D001133 2.6e-52 210.3 374 38.5
Ca_16281_v3 Cicer arietinum L. HOM05D007498 ORTHO05D009384 5.7e-52 209.1 387 37.7
Gohir.D07G089300 Gossypium hirsutum HOM05D007498 ORTHO05D009384 6.3e-51 205.7 279 45.9
SEGI_23048 Sequoiadendron giganteum HOM05D007498 ORTHO05D009384 1.1e-50 204.9 346 36.1
MD09G1113200 Malus domestica HOM05D007498 ORTHO05D009384 5.3e-50 202.6 230 49.6
Gohir.A07G083200 Gossypium hirsutum HOM05D007498 ORTHO05D009384 2.9e-48 196.8 278 45.3
CDE07G0657 Ceratophyllum demersum HOM05D000323 ORTHO05D009384 7.5e-44 182.2 322 38.5
Haze_12773 Corylus avellana HOM05D007498 ORTHO05D009384 6.1e-38 162.5 208 48.6
DCAR_019260 Daucus carota HOM05D007498 ORTHO05D001133 2.6e-36 157.1 163 50.3
AagrBONN_evm.TU.Sc2ySwM_344.4295 Anthoceros agrestis HOM05D007498 ORTHO05D009384 1.7e-32 144.4 355 29.0
Mapoly0005s0243 Marchantia polymorpha HOM05D007498 ORTHO05D009384 3.8e-32 143.3 344 29.1
Pp3c17_21590 Physcomitrium patens HOM05D007498 ORTHO05D009384 5.7e-28 129.4 295 30.8
Cpa.g.sc132.15 Carica papaya HOM05D007498 ORTHO05D009384 5.9e-25 119.4 95 65.3
SMO146G0054 Selaginella moellendorffii HOM05D007498 ORTHO05D009384 1.0e-21 108.6 283 29.3
Atru.chr6.3248 Acer truncatum HOM05D007498 ORTHO05D009384 2.6e-20 104.0 73 74.0
Atru.chr6.3249 Acer truncatum HOM05D007498 ORTHO05D009384 5.8e-20 102.8 93 53.8
Aqoxy1G02941 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 2.0e-17 94.4 94 48.9
VMungo0540G1885 Vigna mungo HOM05D007498 ORTHO05D009384 8.9e-13 79.0 77 50.6
VMungo0540G0169 Vigna mungo HOM05D007498 ORTHO05D009384 2.1e-09 67.8 85 44.7


User provided reference genes

Program Settings