Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.5e-129 466.5 283 100.0
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 4.7e-83 312.0 273 67.8
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 3.9e-53 212.6 428 41.1
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 8.1e-43 178.3 301 42.9
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 5.3e-42 175.6 298 41.9
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 8.4e-40 168.3 326 37.7
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 2.4e-39 166.8 307 40.1
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 4.6e-38 162.5 304 40.5
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 1.0e-37 161.4 286 40.6
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 1.0e-37 161.4 287 42.5
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 8.7e-37 158.3 150 60.7
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.5e-36 157.5 297 39.4
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.9e-36 157.1 344 40.1
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 3.3e-36 156.4 326 39.6
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 7.4e-36 155.2 319 39.5
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 2.8e-35 153.3 334 36.8
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 8.1e-35 151.8 349 35.0
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 8.1e-35 151.8 341 36.4
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.4e-34 151.0 143 62.2
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.4e-34 151.0 286 41.6
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.8e-34 150.6 358 34.9
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 5.3e-34 149.1 350 37.4
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.5e-33 147.5 323 37.5
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-33 147.1 276 40.6
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 2.6e-33 146.7 151 60.3
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.5e-33 146.0 347 34.3
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.8e-33 145.6 347 34.9
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 7.6e-33 145.2 142 62.0
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 1.7e-32 144.1 270 39.3
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.8e-32 142.9 347 34.3
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 8.4e-32 141.7 123 66.7
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 4.2e-31 139.4 144 59.7
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 5.5e-31 139.0 126 59.5
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 5.5e-31 139.0 126 59.5
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 7.1e-31 138.7 301 38.5
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.2e-30 137.9 158 51.9
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.2e-30 137.9 155 52.3
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 2.1e-30 137.1 142 57.0
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 2.7e-30 136.7 126 61.1
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 3.5e-30 136.3 164 53.0
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.0e-29 134.8 126 57.1
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 1.0e-29 134.8 126 57.1
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.8e-29 134.0 277 40.1
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.8e-29 134.0 126 58.7
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 2.3e-29 133.7 350 34.3
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 2.3e-29 133.7 152 56.6
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 5.1e-29 132.5 149 50.3
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 8.7e-29 131.7 299 37.5
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.7e-29 131.7 126 56.3
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.1e-28 131.3 152 55.3
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.5e-28 131.0 322 37.3
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 1.5e-28 131.0 125 66.4
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.5e-28 131.0 311 40.5
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.5e-28 130.2 134 61.2
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 3.3e-28 129.8 159 59.7
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.3e-28 129.8 154 56.5
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 4.3e-28 129.4 135 53.3
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 5.6e-28 129.0 165 49.7
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 5.6e-28 129.0 129 66.7
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 7.4e-28 128.6 128 65.6
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.1e-27 127.1 133 58.6
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.1e-27 127.1 129 66.7
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.1e-27 127.1 129 66.7
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 2.1e-27 127.1 146 56.8
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.8e-27 126.7 274 35.8
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 3.7e-27 126.3 326 39.3
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.8e-27 125.9 148 56.1
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 6.2e-27 125.6 135 56.3
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 8.2e-27 125.2 284 33.1
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 8.2e-27 125.2 139 55.4
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 8.2e-27 125.2 315 36.2
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.4e-26 124.4 305 36.4
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.8e-26 124.0 136 57.4
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.4e-26 123.6 162 48.8
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.0e-26 122.9 275 37.8
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 6.9e-26 122.1 132 58.3
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 9.0e-26 121.7 145 53.1
CsaV3_3G030050 Cucumis sativus L. HOM05D008218 ORTHO05D010347 1.2e-25 121.3 158 51.9
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 1.5e-25 120.9 140 53.6
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.5e-25 120.9 118 55.9
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 2.6e-25 120.2 148 56.1
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 2.6e-25 120.2 163 46.6
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 7.6e-25 118.6 130 56.9
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 7.6e-25 118.6 130 56.9
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 7.6e-25 118.6 130 56.9
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 7.6e-25 118.6 287 33.8
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.0e-24 118.2 292 32.5
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 2.2e-24 117.1 129 56.6
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 2.9e-24 116.7 154 50.6
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 6.5e-24 115.5 129 56.6
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 8.4e-24 115.2 120 59.2
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 4.2e-23 112.8 125 55.2
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 9.3e-23 111.7 378 32.0
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.1e-22 110.5 294 32.7
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 6.0e-22 109.0 129 56.6
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 7.9e-22 108.6 112 54.5
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 7.9e-22 108.6 130 55.4
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 7.9e-22 108.6 137 57.7
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 1.0e-21 108.2 124 56.5
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.3e-21 107.1 133 45.9
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 3.0e-21 106.7 124 54.8
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 6.7e-21 105.5 147 48.3
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 1.1e-20 104.8 298 35.6
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.9e-20 104.0 309 32.7
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.9e-20 104.0 309 32.7
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 4.3e-20 102.8 294 37.1
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 5.7e-20 102.4 117 53.8
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 5.7e-20 102.4 331 35.3
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 5.7e-20 102.4 147 45.6
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 7.4e-20 102.1 292 38.7
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 4.8e-19 99.4 143 49.0
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 4.8e-19 99.4 155 49.0
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.2e-19 98.6 151 42.4
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 1.1e-18 98.2 301 32.6
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 6.9e-18 95.5 116 52.6
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 3.4e-17 93.2 158 39.9
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 5.9e-17 92.4 138 39.9
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 5.9e-17 92.4 140 42.9
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 8.5e-16 88.6 125 47.2
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.2e-15 86.7 137 35.8
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 1.2e-14 84.7 138 37.7
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.7e-14 83.6 107 49.5
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 2.3e-13 80.5 117 46.2
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 3.0e-13 80.1 82 57.3
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 3.0e-13 80.1 157 38.2
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 1.1e-12 78.2 184 35.9
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 1.1e-10 71.6 134 39.6
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 1.1e-10 71.6 41 78.0
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.4e-10 71.2 215 32.6
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.4e-10 71.2 260 28.8
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 7.7e-09 65.5 315 29.2
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 2.9e-08 63.5 160 38.1
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 5.5e-07 59.3 179 32.4
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.6e-06 57.8 125 40.0


User provided reference genes

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