Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G005860 Citrullus lanatus HOM05D021455 ORTHO05D010440 1.1e-209 733.0 359 100.0
ClCG07G001350 Citrullus lanatus HOM05D021455 ORTHO05D010440 1.1e-209 733.0 359 100.0
CsaV3_3G028310 Cucumis sativus L. HOM05D021455 ORTHO05D010440 1.1e-158 563.5 346 80.3
Sed0013342 Sechium edule HOM05D021455 ORTHO05D010440 2.9e-130 469.2 365 67.4
Sed0008915 Sechium edule HOM05D021455 ORTHO05D010440 9.8e-86 321.2 343 53.9
Sopen12g023140 Solanum pennellii HOM05D008706 ORTHO05D010440 3.6e-19 100.1 385 26.2
PGSC0003DMG400024780 Solanum tuberosum HOM05D008706 ORTHO05D010440 3.6e-19 100.1 369 26.6
Sopen01g043690 Solanum pennellii HOM05D008706 ORTHO05D010440 1.8e-18 97.8 369 26.6
Sopen01g043720 Solanum pennellii HOM05D008706 ORTHO05D010440 1.8e-18 97.8 369 26.6
Sopen12g023130 Solanum pennellii HOM05D008706 ORTHO05D010440 3.0e-18 97.1 385 26.0
PGSC0003DMG400009944 Solanum tuberosum HOM05D008706 ORTHO05D010440 6.7e-18 95.9 391 26.9
PGSC0003DMG400037851 Solanum tuberosum HOM05D008706 ORTHO05D010440 8.8e-18 95.5 312 28.2
Solyc12g044775.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 1.5e-17 94.7 385 25.2
PGSC0003DMG400008068 Solanum tuberosum HOM05D008706 ORTHO05D010440 4.4e-17 93.2 379 27.2
Nitab4.5_0001201g0040 Nicotiana tabacum HOM05D008706 ORTHO05D010440 5.7e-17 92.8 281 30.2
Peaxi162Scf00347g00087 Petunia axillaris HOM05D008706 ORTHO05D010440 4.8e-16 89.7 312 29.2
CAN.G546.3 Capsicum annuum HOM05D008706 ORTHO05D010440 6.3e-16 89.4 407 26.0
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 1.8e-15 87.8 298 27.9
Sopen12g023120 Solanum pennellii HOM05D008706 ORTHO05D010440 2.4e-15 87.4 368 25.0
Peaxi162Scf00073g00111 Petunia axillaris HOM05D008706 ORTHO05D010440 3.1e-15 87.0 284 28.9
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 9.1e-15 85.5 376 25.3
MBI05_g44031_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 1.2e-14 85.1 313 27.8
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 3.5e-14 83.6 379 24.8
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 5.9e-14 82.8 376 25.3
DCAR_004585 Daucus carota HOM05D001729 ORTHO05D001155 7.7e-14 82.4 357 26.6
Lsat_1_v5_gn_5_30901 Lactuca sativa HOM05D001729 ORTHO05D001155 7.7e-14 82.4 258 30.6
Solyc12g044780.2 Solanum lycopersicum HOM05D008706 ORTHO05D010440 1.3e-13 81.6 335 25.4
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 2.2e-13 80.9 228 30.3
Solyc11g069120.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 2.9e-13 80.5 267 29.6
PGSC0003DMG400009874 Solanum tuberosum HOM05D008706 ORTHO05D010440 2.9e-13 80.5 272 31.6
Lj8C33T14 Lonicera japonica HOM05D000664 ORTHO05D000491 1.1e-12 78.6 301 26.9
Peaxi162Scf01164g00027 Petunia axillaris HOM05D008706 ORTHO05D010440 1.1e-12 78.6 277 28.5
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 1.1e-12 78.6 325 28.6
CAN.G546.5 Capsicum annuum HOM05D008706 ORTHO05D010440 1.5e-12 78.2 300 28.7
Nitab4.5_0001201g0090 Nicotiana tabacum HOM05D008706 ORTHO05D010440 1.9e-12 77.8 280 28.6
Sed0001582 Sechium edule HOM05D002420 ORTHO05D002422 4.2e-12 76.6 239 28.0
RcHm_v2.0_Chr7g0211081 Rosa chinensis HOM05D000007 ORTHO05D000017 5.5e-12 76.3 259 29.0
Gohir.A12G196800 Gossypium hirsutum HOM05D000664 ORTHO05D000491 9.4e-12 75.5 381 24.7
Gohir.D12G199300 Gossypium hirsutum HOM05D000664 ORTHO05D000491 2.1e-11 74.3 381 24.1
Gorai.008G214500 Gossypium raimondii HOM05D000664 ORTHO05D000491 2.1e-11 74.3 381 24.1
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 3.6e-11 73.6 247 29.6
CiPaw.07G037900 Carya illinoinensis HOM05D000007 ORTHO05D000017 4.7e-11 73.2 260 26.9
PSO782G2286 Papaver somniferum HOM05D002420 ORTHO05D002422 6.1e-11 72.8 315 22.9
Rhsim08G0219900 Rhododendron simsii HOM05D001729 ORTHO05D001155 8.0e-11 72.4 325 26.8
Atru.chr4.13 Acer truncatum HOM05D000007 ORTHO05D000521 1.8e-10 71.2 291 27.5
Lsat_1_v5_gn_9_51461 Lactuca sativa HOM05D000664 ORTHO05D000491 3.0e-10 70.5 231 26.4
RcHm_v2.0_Chr2g0109761 Rosa chinensis HOM05D000007 ORTHO05D000017 3.0e-10 70.5 317 26.2
Rhsim08G0238800 Rhododendron simsii HOM05D001729 ORTHO05D001155 3.9e-10 70.1 321 26.8
Duzib170G0599 Durio zibethinus HOM05D001729 ORTHO05D001155 5.2e-10 69.7 223 28.7
Nitab4.5_0002715g0100 Nicotiana tabacum HOM05D008706 ORTHO05D010440 6.7e-10 69.3 294 25.2
Rhsim08G0237800 Rhododendron simsii HOM05D001729 ORTHO05D001155 8.8e-10 68.9 370 25.7
Prupe.1G147000 Prunus persica HOM05D000007 ORTHO05D000521 1.1e-09 68.6 278 29.9
CAN.G396.6 Capsicum annuum HOM05D008706 ORTHO05D010440 1.5e-09 68.2 251 28.3
TAR374G0716 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.5e-09 68.2 290 27.2
Nitab4.5_0000368g0410 Nicotiana tabacum HOM05D008706 ORTHO05D010440 2.0e-09 67.8 181 29.3
QL05p012608 Quercus lobata HOM05D001729 ORTHO05D001155 2.0e-09 67.8 377 23.9
PSO063G5348 Papaver somniferum HOM05D002420 ORTHO05D002422 2.6e-09 67.4 316 22.8
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 3.3e-09 67.0 213 30.5
PSO161G0051 Papaver somniferum HOM05D008326 ORTHO05D001155 3.3e-09 67.0 307 27.4
Rhsim01G0016500 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.3e-09 67.0 295 25.4
Aqoxy3G00361 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 5.7e-09 66.2 293 27.3
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 5.7e-09 66.2 271 26.6
FvH4_1g19570 Fragaria vesca HOM05D000007 ORTHO05D045667 7.4e-09 65.9 250 26.8
FAN07G0903 Fragaria x ananassa HOM05D000664 ORTHO05D000491 7.4e-09 65.9 298 26.2
Sc09g0004440 Simmondsia chinensis HOM05D000664 ORTHO05D000491 7.4e-09 65.9 243 25.5
Thecc.06G054800 Theobroma cacao HOM05D000664 ORTHO05D000491 7.4e-09 65.9 325 24.0
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 9.7e-09 65.5 271 26.6
TAR626G0622 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.3e-08 65.1 290 26.6
FvH4_3g24880 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-08 64.7 268 28.0
FAN11G0961 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-08 64.7 268 28.0
Ciclev10005086m.g Citrus clementina HOM05D000664 ORTHO05D000491 2.2e-08 64.3 246 25.2
Rhsim08G0220200 Rhododendron simsii HOM05D001729 ORTHO05D001155 2.2e-08 64.3 206 28.2
Actinidia34395 Actinidia chinensis HOM05D033045 ORTHO05D000491 2.8e-08 63.9 258 27.5
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 2.8e-08 63.9 348 23.3
COL.COLO4_29637 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.8e-08 63.9 297 25.9
Sed0018855 Sechium edule HOM05D021455 ORTHO05D010440 2.8e-08 63.9 54 61.1
PSO384G4310 Papaver somniferum HOM05D000007 ORTHO05D000017 3.7e-08 63.5 266 23.3
PSO675G3766 Papaver somniferum HOM05D000007 ORTHO05D000017 3.7e-08 63.5 363 23.1
Aqoxy5G01770 Aquilegia oxysepala HOM05D000664 ORTHO05D009863 4.8e-08 63.2 281 25.6
FAN21G3529 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.8e-08 63.2 268 27.6
Lj6C667T8 Lonicera japonica HOM05D000007 ORTHO05D000017 4.8e-08 63.2 263 27.0
MD09G1201600 Malus domestica HOM05D001729 ORTHO05D001155 4.8e-08 63.2 389 22.9
PSO675G7142 Papaver somniferum HOM05D008326 ORTHO05D001155 4.8e-08 63.2 241 29.5
QL07p003126 Quercus lobata HOM05D000007 ORTHO05D000039 4.8e-08 63.2 309 25.2
RcHm_v2.0_Chr4g0398091 Rosa chinensis HOM05D000664 ORTHO05D000491 6.3e-08 62.8 305 24.9
Actinidia37850 Actinidia chinensis HOM05D000007 ORTHO05D000039 8.2e-08 62.4 288 25.0
AL8G43560 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.2e-08 62.4 277 24.9
Carub.0006s0659 Capsella rubella HOM05D000664 ORTHO05D000491 8.2e-08 62.4 300 25.3
PSO384G0370 Papaver somniferum HOM05D001729 ORTHO05D001155 1.1e-07 62.0 184 28.8
Ciclev10006734m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.4e-07 61.6 323 24.5
PSO063G7655 Papaver somniferum HOM05D008326 ORTHO05D001155 1.4e-07 61.6 216 27.3
Sabra09G0127200 Salix brachista HOM05D001729 ORTHO05D001155 1.4e-07 61.6 233 27.5
Sopen10g002860 Solanum pennellii HOM05D008898 ORTHO05D001155 1.4e-07 61.6 327 25.1
FvH4_3g42321 Fragaria vesca HOM05D000007 ORTHO05D000017 1.8e-07 61.2 260 25.4
FAN11G0172 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.8e-07 61.2 260 25.4
Aa31LG3G18820 Aethionema arabicum HOM05D000664 ORTHO05D000491 2.4e-07 60.8 241 26.6
Cfa014273 Carpinus fangiana HOM05D000007 ORTHO05D000521 2.4e-07 60.8 244 29.1
FvH4_3g42360 Fragaria vesca HOM05D000007 ORTHO05D000017 2.4e-07 60.8 268 25.7
FvH4_4g06320 Fragaria vesca HOM05D000664 ORTHO05D000491 2.4e-07 60.8 298 25.8
FAN11G0597 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.4e-07 60.8 268 25.7
FAN28G1795 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.4e-07 60.8 268 25.7
Gorai.001G050600 Gossypium raimondii HOM05D000664 ORTHO05D000491 2.4e-07 60.8 253 25.7
Lsat_1_v5_gn_9_51421 Lactuca sativa HOM05D000664 ORTHO05D000491 2.4e-07 60.8 229 27.5
Lsat_1_v5_gn_9_68740 Lactuca sativa HOM05D000007 ORTHO05D000017 2.4e-07 60.8 264 26.1
PSO675G6708 Papaver somniferum HOM05D008326 ORTHO05D001155 2.4e-07 60.8 225 29.8
Peaxi162Scf00136g00622 Petunia axillaris HOM05D008706 ORTHO05D010440 2.4e-07 60.8 201 29.4
SalBow1G7289 Salvia bowleyana HOM05D000007 ORTHO05D000017 2.4e-07 60.8 278 25.5
Nitab4.5_0017036g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.1e-07 60.5 261 25.7
RcHm_v2.0_Chr5g0075691 Rosa chinensis HOM05D000007 ORTHO05D000017 3.1e-07 60.5 310 23.5
HanXRQChr03g0067801 Helianthus annuus HOM05D000664 ORTHO05D000491 4.1e-07 60.1 223 27.8
Rhsim04G0064700 Rhododendron simsii HOM05D000664 ORTHO05D000491 4.1e-07 60.1 318 25.5
Thecc.07G075500 Theobroma cacao HOM05D000007 ORTHO05D000039 4.1e-07 60.1 250 24.0
Zm00001eb366400 Zea mays HOM05D000664 ORTHO05D000491 4.1e-07 60.1 292 26.7
Nitab4.5_0000059g0620 Nicotiana tabacum HOM05D000007 ORTHO05D000017 5.3e-07 59.7 244 27.0
PSO339G2134 Papaver somniferum HOM05D000007 ORTHO05D000017 5.3e-07 59.7 266 22.9
QL09p044835 Quercus lobata HOM05D000007 ORTHO05D000039 5.3e-07 59.7 271 26.2
RcHm_v2.0_Chr3g0475411 Rosa chinensis HOM05D000007 ORTHO05D000017 5.3e-07 59.7 264 25.8
RcHm_v2.0_Chr5g0076101 Rosa chinensis HOM05D000007 ORTHO05D000017 5.3e-07 59.7 267 26.6
Cc02_g04650 Coffea canephora HOM05D000664 ORTHO05D000491 7.0e-07 59.3 215 27.4
Gohir.A11G278000 Gossypium hirsutum HOM05D000664 ORTHO05D000491 7.0e-07 59.3 249 25.7
HanXRQChr06g0184351 Helianthus annuus HOM05D000007 ORTHO05D000039 7.0e-07 59.3 245 24.1
PSO782G1123 Papaver somniferum HOM05D008326 ORTHO05D001155 7.0e-07 59.3 197 28.9
Peaxi162Scf00048g00194 Petunia axillaris HOM05D000007 ORTHO05D000017 7.0e-07 59.3 288 24.3
Sabra19G0026600 Salix brachista HOM05D007779 ORTHO05D009863 7.0e-07 59.3 371 24.5
AT1G46984 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 9.1e-07 58.9 245 28.6
Migut.M00201 Erythranthe guttata HOM05D000007 ORTHO05D000039 9.1e-07 58.9 294 24.8
FAN11G3870 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.1e-07 58.9 260 26.5
FAN19G0863 Fragaria x ananassa HOM05D000007 ORTHO05D045667 9.1e-07 58.9 253 25.7
Gorai.007G311900 Gossypium raimondii HOM05D000664 ORTHO05D000491 9.1e-07 58.9 249 25.7
HanXRQChr16g0525221 Helianthus annuus HOM05D000664 ORTHO05D000491 9.1e-07 58.9 213 26.8
MBI15_g33468_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 9.1e-07 58.9 339 25.1
Nn4g25520 Nelumbo nucifera HOM05D007162 ORTHO05D007631 9.1e-07 58.9 302 25.5
PSO135G0788 Papaver somniferum HOM05D001729 ORTHO05D001155 9.1e-07 58.9 193 25.9
CiPaw.07G037800 Carya illinoinensis HOM05D000007 ORTHO05D000017 1.2e-06 58.5 277 25.3
ECA238G4824 Erigeron canadensis HOM05D000664 ORTHO05D000491 1.2e-06 58.5 247 25.5
FAN17G0186 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.2e-06 58.5 278 25.5
PSO170G0677 Papaver somniferum HOM05D008326 ORTHO05D001155 1.2e-06 58.5 235 26.4
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 1.2e-06 58.5 225 27.1
Cfa006387 Carpinus fangiana HOM05D007779 ORTHO05D009863 1.6e-06 58.2 270 23.3
Gohir.A11G151150 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.6e-06 58.2 324 24.1
Rhsim01G0017500 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.6e-06 58.2 310 23.9
Sopen04g027220 Solanum pennellii HOM05D000173 ORTHO05D000316 1.6e-06 58.2 315 24.8
FvH4_1g08100 Fragaria vesca HOM05D000007 ORTHO05D000017 2.0e-06 57.8 249 27.3
FvH4_3g42304 Fragaria vesca HOM05D000007 ORTHO05D000017 2.0e-06 57.8 260 26.9
FvH4_6g27880 Fragaria vesca HOM05D000007 ORTHO05D000039 2.0e-06 57.8 275 23.6
FAN14G0238 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.0e-06 57.8 275 23.6
PSO339G1193 Papaver somniferum HOM05D008326 ORTHO05D001155 2.0e-06 57.8 245 28.2
PGSC0003DMG400025009 Solanum tuberosum HOM05D008898 ORTHO05D001155 2.0e-06 57.8 244 25.0
AT5G18160 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.6e-06 57.4 273 25.6
Cc11_g04270 Coffea canephora HOM05D000007 ORTHO05D000017 2.6e-06 57.4 268 24.3
FAN28G0209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.6e-06 57.4 260 26.2
Gohir.D11G157900 Gossypium hirsutum HOM05D000007 ORTHO05D000521 2.6e-06 57.4 306 24.2
Lsat_1_v5_gn_5_38600 Lactuca sativa HOM05D001729 ORTHO05D001155 2.6e-06 57.4 216 27.8
PSO541G4811 Papaver somniferum HOM05D008326 ORTHO05D001155 2.6e-06 57.4 289 26.3
Sc06g0009860 Simmondsia chinensis HOM05D000007 ORTHO05D000039 2.6e-06 57.4 269 27.1
Thhalv10022274m.g Eutrema salsugineum HOM05D000007 ORTHO05D011249 3.5e-06 57.0 294 22.4
FvH4_2g21221 Fragaria vesca HOM05D018386 ORTHO05D025420 3.5e-06 57.0 218 26.1
HanXRQChr02g0050191 Helianthus annuus HOM05D000007 ORTHO05D000039 3.5e-06 57.0 263 23.6
SalBow7G0422 Salvia bowleyana HOM05D000007 ORTHO05D000017 3.5e-06 57.0 270 24.8
Gohir.D07G047500 Gossypium hirsutum HOM05D000664 ORTHO05D000491 4.5e-06 56.6 244 25.0
Hma1.2p1_1797F.1_g302840 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 4.5e-06 56.6 272 25.0
QL04p020508 Quercus lobata HOM05D002420 ORTHO05D002422 4.5e-06 56.6 303 26.1
Ciclev10028647m.g Citrus clementina HOM05D000007 ORTHO05D000039 5.9e-06 56.2 235 22.6
CsaV3_4G005120 Cucumis sativus L. HOM05D002420 ORTHO05D002422 5.9e-06 56.2 235 26.0
Lsat_1_v5_gn_4_180620 Lactuca sativa HOM05D008898 ORTHO05D001155 5.9e-06 56.2 235 26.0
Lj1C674T3 Lonicera japonica HOM05D000007 ORTHO05D000039 5.9e-06 56.2 317 24.9
HanXRQChr05g0136161 Helianthus annuus HOM05D000007 ORTHO05D000039 7.7e-06 55.8 269 21.9
HanXRQChr05g0136191 Helianthus annuus HOM05D000007 ORTHO05D000039 7.7e-06 55.8 257 24.1
HanXRQChr15g0474331 Helianthus annuus HOM05D008898 ORTHO05D001155 7.7e-06 55.8 286 25.9
Peaxi162Scf00725g00025 Petunia axillaris HOM05D000664 ORTHO05D000491 7.7e-06 55.8 184 28.8
Potri.010G254000 Populus trichocarpa HOM05D000664 ORTHO05D000491 7.7e-06 55.8 227 25.1
Potri.019G013900 Populus trichocarpa HOM05D007779 ORTHO05D009863 7.7e-06 55.8 268 24.3
QL04p019471 Quercus lobata HOM05D000007 ORTHO05D000039 7.7e-06 55.8 291 25.8
QL04p019991 Quercus lobata HOM05D002420 ORTHO05D002422 7.7e-06 55.8 307 24.8
QL11p050309 Quercus lobata HOM05D000007 ORTHO05D000039 7.7e-06 55.8 301 21.6


User provided reference genes

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