Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G001200 Citrullus lanatus HOM05D006470 ORTHO05D007978 4.9e-170 601.7 469 100.0
MELO3C012860.2 Cucumis melo HOM05D006470 ORTHO05D007978 5.9e-139 498.4 474 86.3
CsaV3_3G022070 Cucumis sativus L. HOM05D006470 ORTHO05D007978 2.1e-120 436.8 469 82.9
ClCG00G001450 Citrullus lanatus HOM05D006470 ORTHO05D007978 1.7e-109 400.6 201 100.0
Sed0015172 Sechium edule HOM05D006470 ORTHO05D007978 4.3e-97 359.4 467 75.6
Sed0003902 Sechium edule HOM05D006470 ORTHO05D007978 1.3e-93 347.8 470 75.1
Thecc.01G254400 Theobroma cacao HOM05D006470 ORTHO05D007978 7.6e-70 268.9 443 53.7
Duzib138G0951 Durio zibethinus HOM05D006470 ORTHO05D007978 3.8e-69 266.5 465 54.8
COL.COLO4_04011 Corchorus olitorius HOM05D006470 ORTHO05D007978 1.4e-68 264.6 447 55.9
Gorai.001G179700 Gossypium raimondii HOM05D006470 ORTHO05D007978 3.2e-68 263.5 464 50.6
Gohir.D07G156600 Gossypium hirsutum HOM05D006470 ORTHO05D007978 4.2e-68 263.1 464 50.2
Duzib133G1499 Durio zibethinus HOM05D006470 ORTHO05D007978 9.3e-68 261.9 444 55.6
Manes.13G036500 Manihot esculenta HOM05D006470 ORTHO05D007978 1.1e-65 255.0 464 52.6
QL09p040137 Quercus lobata HOM05D006470 ORTHO05D007978 2.0e-62 244.2 410 44.9
FAN27G1109 Fragaria x ananassa HOM05D006470 ORTHO05D007978 5.8e-62 242.7 439 55.8
Gohir.A07G150300 Gossypium hirsutum HOM05D006470 ORTHO05D007978 5.8e-62 242.7 464 56.9
TWI12G0101 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 7.6e-62 242.3 459 56.6
Manes.12G034500 Manihot esculenta HOM05D006470 ORTHO05D007978 9.9e-62 241.9 472 51.5
FAN24G3268 Fragaria x ananassa HOM05D006470 ORTHO05D007978 2.9e-61 240.4 439 52.2
FvH4_2g21070 Fragaria vesca HOM05D006470 ORTHO05D007978 4.9e-61 239.6 442 52.9
FAN15G1173 Fragaria x ananassa HOM05D006470 ORTHO05D007978 2.7e-59 233.8 439 54.0
Haze_24664 Corylus avellana HOM05D006470 ORTHO05D007978 3.5e-59 233.4 201 60.7
Cpa.g.sc165.30 Carica papaya HOM05D006470 ORTHO05D007978 3.9e-58 229.9 410 54.6
Cfa002452 Carpinus fangiana HOM05D006470 ORTHO05D007978 3.9e-58 229.9 201 59.7
FAN20G2495 Fragaria x ananassa HOM05D006470 ORTHO05D007978 3.9e-58 229.9 439 54.9
MD10G1180100 Malus domestica HOM05D006470 ORTHO05D007978 1.1e-57 228.4 407 47.9
Sabra05G0175600 Salix brachista HOM05D006470 ORTHO05D007978 1.1e-57 228.4 464 54.1
Hma1.2p1_0576F.1_g181850 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 2.8e-56 223.8 452 40.3
RcHm_v2.0_Chr6g0287531 Rosa chinensis HOM05D006470 ORTHO05D007978 2.8e-56 223.8 439 54.4
TWI18G0736 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 3.6e-56 223.4 462 52.2
CiPaw.03G267400 Carya illinoinensis HOM05D006470 ORTHO05D007978 6.2e-56 222.6 469 51.2
Potri.005G227600 Populus trichocarpa HOM05D006470 ORTHO05D007978 1.8e-55 221.1 458 52.4
Thhalv10027034m.g Eutrema salsugineum HOM05D006470 ORTHO05D007978 5.8e-54 216.1 408 44.9
Dinv22382 Davidia involucrata HOM05D006470 ORTHO05D007978 9.9e-54 215.3 405 51.4
Prupe.8G220100 Prunus persica HOM05D006470 ORTHO05D007978 5.4e-52 209.5 186 57.5
SGA_v2.0_scaffold1G00631 Striga asiatica HOM05D006470 ORTHO05D007978 5.4e-52 209.5 472 41.9
Ciclev10020031m.g Citrus clementina HOM05D006470 ORTHO05D007978 9.3e-52 208.8 189 56.6
Rhsim13G0037300 Rhododendron simsii HOM05D006470 ORTHO05D007978 1.2e-51 208.4 445 55.5
CSS0034739 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 7.9e-51 205.7 424 56.8
SHI26693 Sapria himalayana HOM05D006470 ORTHO05D007978 1.0e-50 205.3 454 43.8
Nitab4.5_0003295g0060 Nicotiana tabacum HOM05D006470 ORTHO05D007978 3.0e-50 203.8 426 50.9
BraA01t00881Z Brassica rapa HOM05D006470 ORTHO05D007978 1.5e-49 201.4 399 45.1
Sp7g26550 Schrenkiella parvula HOM05D006470 ORTHO05D007978 2.5e-49 200.7 406 45.6
Lsat_1_v5_gn_9_10681 Lactuca sativa HOM05D006470 ORTHO05D007978 3.3e-49 200.3 424 50.7
CSS0011402 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 4.3e-49 199.9 451 54.5
Lalb_Chr25g0289891 Lupinus albus HOM05D006470 ORTHO05D007978 5.6e-49 199.5 466 51.7
Lj5g0015356 Lotus japonicus HOM05D006470 ORTHO05D007978 2.8e-48 197.2 469 46.3
Aa31LG2G21810 Aethionema arabicum HOM05D006470 ORTHO05D007978 3.7e-48 196.8 411 45.5
DCAR_012563 Daucus carota HOM05D006470 ORTHO05D007978 3.7e-48 196.8 436 44.7
A01p09340 Brassica napus HOM05D006470 ORTHO05D007978 6.2e-48 196.1 399 44.9
Ca_09663_v3 Cicer arietinum L. HOM05D006470 ORTHO05D007978 8.1e-48 195.7 462 45.7
arahy.Tifrunner.gnm1.ann1.NTND9X Arachis hypogaea HOM05D006470 ORTHO05D007978 1.1e-47 195.3 438 44.5
BcaNung04289 Brassica carinata HOM05D006470 ORTHO05D007978 1.1e-47 195.3 407 43.5
AL7G23980 Arabidopsis lyrata HOM05D006470 ORTHO05D007978 1.4e-47 194.9 382 52.9
Actinidia37529 Actinidia chinensis HOM05D006470 ORTHO05D007978 1.8e-47 194.5 416 48.6
Medtr1g069695 Medicago truncatula HOM05D006470 ORTHO05D007978 5.3e-47 193.0 462 50.0
C01p10920 Brassica napus HOM05D006470 ORTHO05D007978 6.9e-47 192.6 405 46.9
Migut.D00451 Erythranthe guttata HOM05D006470 ORTHO05D007978 2.0e-46 191.0 470 51.1
vmacro02686 Vaccinium macrocarpon HOM05D006470 ORTHO05D007978 2.6e-46 190.7 460 57.6
Aqoxy5G00193 Aquilegia oxysepala HOM05D006470 ORTHO05D007978 3.4e-46 190.3 469 50.7
Glyma.10G038800 Glycine max HOM05D006470 ORTHO05D007978 3.4e-46 190.3 441 41.0
Lj2P1147T22 Lonicera japonica HOM05D006470 ORTHO05D007978 5.8e-46 189.5 445 52.8
AT4G28560 Arabidopsis thaliana HOM05D006470 ORTHO05D007978 1.7e-45 188.0 409 53.5
BcaC09g51655 Brassica carinata HOM05D006470 ORTHO05D007978 2.2e-45 187.6 415 45.8
BolC1t01056H Brassica oleracea HOM05D006470 ORTHO05D007978 2.2e-45 187.6 415 45.8
Nitab4.5_0001945g0030 Nicotiana tabacum HOM05D006470 ORTHO05D007978 2.9e-45 187.2 386 50.3
HanXRQChr10g0280761 Helianthus annuus HOM05D006470 ORTHO05D007978 1.4e-44 184.9 473 48.2
CARHR236350 Cardamine hirsuta HOM05D006470 ORTHO05D007978 4.2e-44 183.3 405 49.1
BcaNung04688 Brassica carinata HOM05D006470 ORTHO05D007978 1.6e-43 181.4 203 49.8
BcaNung04689 Brassica carinata HOM05D006470 ORTHO05D007978 1.6e-43 181.4 203 49.8
AUR62025485 Chenopodium quinoa HOM05D006470 ORTHO05D007978 4.6e-43 179.9 452 46.5
Cc01_g18070 Coffea canephora HOM05D006470 ORTHO05D007978 6.0e-43 179.5 467 54.0
Sc05g0003180 Simmondsia chinensis HOM05D006470 ORTHO05D007978 7.9e-43 179.1 415 47.0
MBI10_g13794_MAGBIO Magnolia biondii HOM05D006470 ORTHO05D007978 1.8e-42 177.9 421 53.0
Phvul.007G191000 Phaseolus vulgaris HOM05D006470 ORTHO05D007978 1.8e-42 177.9 457 46.6
Peaxi162Scf00415g00003 Petunia axillaris HOM05D006470 ORTHO05D007978 2.3e-42 177.6 439 46.0
Carub.0007s1211 Capsella rubella HOM05D006470 ORTHO05D007978 3.0e-42 177.2 164 53.7
Psat6g062280 Pisum sativum HOM05D006470 ORTHO05D007978 2.8e-40 170.6 466 44.2
THA.LOC104814525 Tarenaya hassleriana HOM05D006470 ORTHO05D007978 4.8e-40 169.9 154 54.5
PSO210G2696 Papaver somniferum HOM05D006470 ORTHO05D007978 3.1e-39 167.2 452 49.8
VMungo0720G2572 Vigna mungo HOM05D006470 ORTHO05D007978 5.3e-39 166.4 462 45.2
Solyc09g072630.3 Solanum lycopersicum HOM05D006470 ORTHO05D007978 2.6e-38 164.1 404 48.5
SalBow4G0507 Salvia bowleyana HOM05D006470 ORTHO05D007978 5.8e-38 162.9 441 41.3
Lsat_1_v5_gn_5_182700 Lactuca sativa HOM05D006470 ORTHO05D007978 3.8e-37 160.2 165 52.1
Atru.BG.79.p Acer truncatum HOM05D006470 ORTHO05D007978 8.4e-37 159.1 326 57.1
PSO832G0066 Papaver somniferum HOM05D006470 ORTHO05D007978 3.2e-36 157.1 434 51.8
TAR362G1291 Trochodendron aralioides HOM05D006470 ORTHO05D007978 2.1e-35 154.5 182 47.8
ECA248G1135 Erigeron canadensis HOM05D006470 ORTHO05D007978 6.1e-35 152.9 176 48.3
PGSC0003DMG400010325 Solanum tuberosum HOM05D006470 ORTHO05D007978 2.3e-34 151.0 151 49.0
CDE08G1533 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 3.0e-34 150.6 201 44.8
Sopen09g028440 Solanum pennellii HOM05D006470 ORTHO05D007978 5.1e-34 149.8 178 43.8
Psat6g062240 Pisum sativum HOM05D006470 ORTHO05D007978 3.3e-33 147.1 189 40.7
CAN.G1251.2 Capsicum annuum HOM05D006470 ORTHO05D007978 1.8e-31 141.4 153 47.1
CAN.G1868.1 Capsicum annuum HOM05D006470 ORTHO05D007978 1.8e-31 141.4 153 47.1
Glyma.13G125201 Glycine max HOM05D006470 ORTHO05D007978 1.1e-28 132.1 165 45.5
Psat6g063200 Pisum sativum HOM05D006470 ORTHO05D007978 1.1e-28 132.1 191 38.7
Oeu052037.1 Olea europaea HOM05D006470 ORTHO05D007978 5.5e-28 129.8 153 43.8
HPP92_012855 Vanilla planifolia HOM05D006470 ORTHO05D007978 6.1e-27 126.3 159 40.3
ATR0736G105 Amborella trichopoda HOM05D006470 ORTHO05D007978 7.4e-25 119.4 161 37.3
Nn3g19710 Nelumbo nucifera HOM05D006470 ORTHO05D007978 6.3e-24 116.3 440 43.9
unitig_0.g163 Utricularia gibba HOM05D006470 ORTHO05D007978 5.3e-23 113.2 102 52.0
SEGI_23933 Sequoiadendron giganteum HOM05D006470 ORTHO05D007978 6.9e-23 112.8 176 37.5
SMO118G0043 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 7.7e-22 109.4 164 38.4
CDE02G3387 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 1.7e-21 108.2 182 33.5
ATR0681G334 Amborella trichopoda HOM05D006470 ORTHO05D007978 3.8e-21 107.1 162 40.1
Actinidia30147 Actinidia chinensis HOM05D006470 ORTHO05D007978 8.5e-21 105.9 84 60.7
SMO358G0434 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 5.5e-20 103.2 151 36.4
Hma1.2p1_0273F.1_g109440 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 1.2e-19 102.1 421 24.7
Os06g0627500 Oryza sativa ssp. japonica HOM05D006470 ORTHO05D007978 2.7e-19 100.9 170 34.7
SMO146G0184 Selaginella moellendorffii HOM05D003233 ORTHO05D007978 1.3e-16 92.0 170 34.7
AUR62008754 Chenopodium quinoa HOM05D006470 ORTHO05D007978 2.4e-15 87.8 294 50.7
Nn1g02880 Nelumbo nucifera HOM05D006470 ORTHO05D007978 2.6e-14 84.3 292 50.3
Medtr1g069665 Medicago truncatula HOM05D006470 ORTHO05D007978 1.3e-13 82.0 167 34.1
Oeu039680.1 Olea europaea HOM05D006470 ORTHO05D007978 8.8e-10 69.3 151 31.8
SMO339G0042 Selaginella moellendorffii HOM05D007391 ORTHO05D009446 2.8e-08 64.3 123 35.8
Mapoly0066s0046 Marchantia polymorpha HOM05D006470 ORTHO05D007978 8.2e-08 62.8 153 28.1
AagrBONN_evm.TU.Sc2ySwM_344.1086 Anthoceros agrestis HOM05D007391 ORTHO05D004210 3.1e-07 60.8 174 29.3
FAN27G1256 Fragaria x ananassa HOM05D006470 ORTHO05D007978 4.1e-07 60.5 123 44.7
CDE02G2129 Ceratophyllum demersum HOM05D007391 ORTHO05D009446 7.0e-07 59.7 161 32.3
Pp3c24_6450 Physcomitrium patens HOM05D003233 ORTHO05D007978 7.0e-07 59.7 175 25.7
AagrBONN_evm.TU.Sc2ySwM_344.1632 Anthoceros agrestis HOM05D003233 ORTHO05D003694 1.2e-06 58.9 161 29.2
SEGI_17016 Sequoiadendron giganteum HOM05D004034 ORTHO05D004210 1.2e-06 58.9 152 30.3
arahy.Tifrunner.gnm1.ann1.9HLX1I Arachis hypogaea HOM05D007391 ORTHO05D009446 1.6e-06 58.5 164 31.1
arahy.Tifrunner.gnm1.ann1.QTUK9J Arachis hypogaea HOM05D007391 ORTHO05D009446 1.6e-06 58.5 164 31.1
Sed0009683 Sechium edule HOM05D007391 ORTHO05D009446 3.5e-06 57.4 147 32.0
Pp3c23_19100 Physcomitrium patens HOM05D006470 ORTHO05D004210 4.5e-06 57.0 190 25.8
Zm00001eb159500 Zea mays HOM05D007391 ORTHO05D009446 7.7e-06 56.2 153 32.7


User provided reference genes

Program Settings