Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 4.3e-144 514.6 255 100.0
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.9e-99 366.3 205 88.3
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.1e-96 357.1 207 85.0
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.3e-95 353.6 205 85.9
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 4.7e-58 228.8 205 64.9
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.4e-57 227.3 205 63.4
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 7.5e-56 221.5 215 62.8
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 9.8e-56 221.1 217 59.9
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 2.2e-55 219.9 217 58.1
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.1e-53 213.4 217 60.4
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 7.8e-53 211.5 212 58.5
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 2.3e-52 209.9 215 56.3
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 3.0e-52 209.5 217 58.5
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.2e-50 204.1 206 57.8
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.1e-49 201.1 218 54.6
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.1e-49 201.1 208 56.2
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 1.4e-49 200.7 219 54.8
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.8e-49 200.3 212 54.2
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 2.3e-49 199.9 217 56.2
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.1e-49 199.5 215 57.2
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 3.1e-49 199.5 219 54.3
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.0e-49 199.1 212 57.1
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 5.2e-49 198.7 208 56.2
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 5.2e-49 198.7 229 54.6
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 2.0e-48 196.8 222 55.0
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.0e-48 196.8 219 53.4
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 4.4e-48 195.7 187 58.3
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.4e-48 195.7 215 56.3
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 4.4e-48 195.7 211 58.3
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.6e-48 194.9 206 56.3
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 9.9e-48 194.5 220 55.9
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.9e-48 194.5 214 55.1
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 9.9e-48 194.5 208 56.7
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.7e-47 193.7 216 56.9
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 6.4e-47 191.8 207 57.5
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 8.3e-47 191.4 220 55.9
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.9e-46 190.3 221 51.6
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.4e-46 189.9 214 54.2
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 2.4e-46 189.9 208 56.2
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.1e-46 189.1 214 54.2
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.2e-45 187.6 212 51.9
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 2.7e-45 186.4 205 57.6
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 6.0e-45 185.3 209 55.5
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 1.0e-44 184.5 217 56.2
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 1.3e-44 184.1 210 56.7
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 6.6e-44 181.8 202 57.4
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 6.6e-44 181.8 202 57.4
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 6.6e-44 181.8 213 52.1
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 8.6e-44 181.4 203 55.2
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 1.5e-43 180.6 203 56.7
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 4.3e-43 179.1 215 51.6
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 5.6e-43 178.7 210 53.8
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 9.6e-43 177.9 206 55.8
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.2e-42 177.6 216 50.5
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 3.6e-42 176.0 214 53.3
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 3.6e-42 176.0 209 51.7
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 6.2e-42 175.3 203 53.7
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.4e-41 174.1 210 52.4
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 1.8e-41 173.7 209 56.5
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.8e-41 173.7 212 50.9
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.8e-41 173.7 218 51.4
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.0e-41 172.6 212 50.5
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 4.0e-41 172.6 220 49.5
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 8.9e-41 171.4 208 51.9
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.2e-40 171.0 215 48.8
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 1.2e-40 171.0 208 53.4
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.2e-40 171.0 212 51.4
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.5e-40 170.6 221 51.1
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.0e-40 170.2 211 50.7
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 3.4e-40 169.5 211 50.7
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 9.9e-40 167.9 205 48.3
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 9.9e-40 167.9 213 49.8
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.7e-39 167.2 214 48.1
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 2.9e-39 166.4 206 55.3
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.9e-39 166.4 202 53.5
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 2.9e-39 166.4 213 49.8
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 3.8e-39 166.0 208 52.9
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 8.4e-39 164.9 218 50.5
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 8.4e-39 164.9 205 49.8
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.4e-38 164.1 207 52.7
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 2.4e-38 163.3 207 54.1
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.4e-38 162.2 205 46.3
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 9.3e-38 161.4 225 47.6
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 2.1e-37 160.2 201 54.2
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 7.8e-37 158.3 204 52.5
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 7.8e-37 158.3 203 51.2
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.0e-36 157.9 209 48.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.3e-36 157.5 202 50.0
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 1.7e-36 157.1 221 49.3
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 3.0e-36 156.4 198 49.0
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 5.1e-36 155.6 210 48.6
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.1e-35 154.5 178 51.1
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.5e-35 154.1 210 49.5
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.5e-35 153.3 244 45.5
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 7.3e-35 151.8 211 47.9
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 7.3e-35 151.8 229 48.9
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 9.6e-35 151.4 204 49.0
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 9.6e-35 151.4 203 51.7
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.3e-34 151.0 206 51.9
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 1.6e-34 150.6 196 50.0
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.1e-34 150.2 213 50.2
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 6.2e-34 148.7 213 46.9
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 8.1e-34 148.3 208 50.0
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 2.4e-33 146.7 221 45.7
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 3.1e-33 146.4 191 53.4
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 2.0e-32 143.7 213 45.1
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 2.0e-32 143.7 211 46.4
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 4.4e-32 142.5 208 48.1
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 4.4e-32 142.5 199 46.2
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 7.6e-32 141.7 213 46.0
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 9.9e-32 141.4 208 47.1
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 1.3e-31 141.0 213 43.2
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.7e-31 140.6 208 46.2
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.2e-31 140.2 213 49.8
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 2.2e-31 140.2 213 45.5
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 3.8e-31 139.4 209 46.9
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 8.4e-31 138.3 213 42.3
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.4e-30 137.5 213 42.7
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 3.2e-30 136.3 218 44.0
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.2e-30 136.0 207 47.3
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 5.4e-30 135.6 207 46.4
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.4e-30 135.6 208 47.1
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.2e-29 134.4 212 46.2
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.6e-29 134.0 209 47.4
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.1e-29 133.7 203 46.8
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.6e-29 132.5 182 48.4
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 2.3e-28 130.2 212 42.5
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 8.7e-28 128.3 214 43.9
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.1e-27 127.9 214 43.0
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 5.6e-27 125.6 204 43.1
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 5.6e-27 125.6 208 44.2
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.1e-26 123.6 212 43.4
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 3.6e-26 122.9 209 44.0
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 3.6e-26 122.9 209 44.0
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 4.8e-26 122.5 205 44.4
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 1.1e-25 121.3 168 47.0
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 2.4e-25 120.2 203 42.4
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 9.0e-25 118.2 217 44.7
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 2.0e-24 117.1 296 33.4
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 2.0e-24 117.1 248 39.1
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 5.8e-24 115.5 143 46.2
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 7.6e-24 115.2 207 42.0
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.7e-23 114.0 197 42.1
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.7e-23 114.0 212 40.6
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 4.9e-23 112.5 207 41.5
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 5.4e-22 109.0 182 42.9
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 5.4e-22 109.0 202 40.1
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 4.6e-21 105.9 221 41.2
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.0e-20 104.8 186 41.4
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 4.3e-19 99.4 266 35.7
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.7e-18 96.3 129 46.5
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 4.8e-18 95.9 208 38.9
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.3e-15 87.8 58 70.7
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 6.5e-15 85.5 176 34.7
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.9e-14 84.0 207 35.7
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 5.5e-14 82.4 161 45.3
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 7.1e-14 82.0 199 35.7
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 2.1e-13 80.5 199 35.7
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 3.5e-13 79.7 96 51.0
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 5.1e-12 75.9 98 49.0
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 9.6e-11 71.6 51 68.6
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.3e-10 71.2 87 51.7
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 4.1e-09 66.2 83 51.8
TWI75G1401 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 3.4e-08 63.2 60 56.7
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 5.8e-08 62.4 104 43.3
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 1.7e-07 60.8 81 48.1
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 2.2e-07 60.5 47 68.1
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 3.8e-07 59.7 119 38.7


User provided reference genes

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