Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 8.2e-79 297.0 148 100.0
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 6.3e-55 217.6 155 73.5
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 1.3e-39 166.8 153 63.4
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 4.5e-37 158.3 124 68.5
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 1.1e-35 153.7 149 57.0
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 1.1e-35 153.7 156 56.4
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 9.5e-35 150.6 156 53.2
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 1.2e-34 150.2 157 54.8
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 5.8e-32 141.4 158 52.5
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 1.3e-31 140.2 140 56.4
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 1.7e-31 139.8 157 51.0
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 3.7e-31 138.7 137 51.8
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 3.7e-31 138.7 134 55.2
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 1.1e-30 137.1 155 48.4
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 1.9e-30 136.3 157 50.3
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 2.4e-30 136.0 166 50.0
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 6.0e-29 131.3 136 50.7
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 1.3e-28 130.2 136 51.5
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 1.7e-28 129.8 141 50.4
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 2.3e-28 129.4 162 48.8
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 3.0e-28 129.0 147 48.3
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 3.9e-28 128.6 115 54.8
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 8.6e-28 127.5 140 51.4
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 1.1e-27 127.1 157 46.5
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 1.5e-27 126.7 156 47.4
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 1.5e-27 126.7 133 50.4
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 3.3e-27 125.6 152 49.3
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 5.6e-27 124.8 157 47.1
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 7.3e-27 124.4 135 50.4
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 1.2e-26 123.6 156 46.8
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 3.6e-26 122.1 157 46.5
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 3.6e-26 122.1 148 48.6
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 3.6e-26 122.1 91 65.9
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 4.7e-26 121.7 95 61.1
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 4.7e-26 121.7 161 46.0
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 4.7e-26 121.7 156 45.5
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 4.7e-26 121.7 161 44.7
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 6.2e-26 121.3 138 49.3
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 1.1e-25 120.6 162 45.7
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 1.8e-25 119.8 157 47.1
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 2.3e-25 119.4 154 44.2
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 2.3e-25 119.4 154 44.2
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 2.3e-25 119.4 154 44.2
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 2.3e-25 119.4 138 49.3
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 2.3e-25 119.4 134 48.5
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 3.1e-25 119.0 138 49.3
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 3.1e-25 119.0 95 60.0
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 3.1e-25 119.0 137 49.6
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 4.0e-25 118.6 138 47.1
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 4.0e-25 118.6 138 47.1
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 6.8e-25 117.9 155 46.5
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 1.2e-24 117.1 134 49.3
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 1.2e-24 117.1 142 46.5
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 2.0e-24 116.3 138 46.4
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 2.0e-24 116.3 159 46.5
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 3.4e-24 115.5 138 48.6
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 3.4e-24 115.5 120 51.7
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 4.4e-24 115.2 154 42.2
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 4.4e-24 115.2 136 47.1
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 5.8e-24 114.8 138 47.1
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 9.8e-24 114.0 114 55.3
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 9.8e-24 114.0 114 55.3
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 9.8e-24 114.0 96 58.3
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 1.7e-23 113.2 144 43.1
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 2.2e-23 112.8 138 44.9
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 2.2e-23 112.8 138 47.1
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 2.9e-23 112.5 138 46.4
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 2.9e-23 112.5 137 48.9
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 2.9e-23 112.5 137 48.2
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 8.3e-23 110.9 119 47.1
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 8.3e-23 110.9 102 55.9
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 8.3e-23 110.9 156 42.9
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 1.4e-22 110.2 91 56.0
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 1.4e-22 110.2 148 38.5
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 1.9e-22 109.8 149 44.3
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 2.4e-22 109.4 100 55.0
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 3.2e-22 109.0 154 41.6
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 4.1e-22 108.6 163 49.7
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 1.3e-20 103.6 155 47.1
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 1.7e-20 103.2 94 56.4
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 5.1e-20 101.7 162 40.1
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 6.6e-20 101.3 103 50.5
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 9.5e-19 97.4 89 56.2
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 9.5e-19 97.4 85 57.6
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 1.4e-17 93.6 102 46.1
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 3.1e-17 92.4 171 40.9
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 4.0e-17 92.0 130 40.0
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 5.2e-17 91.7 142 37.3
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 6.8e-17 91.3 114 49.1
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 1.2e-16 90.5 140 42.1
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 1.2e-16 90.5 164 38.4
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 1.5e-16 90.1 89 52.8
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 3.7e-15 85.5 148 43.2
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 1.1e-14 84.0 146 42.5
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 5.4e-14 81.6 97 43.3
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 2.1e-13 79.7 85 47.1
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 2.7e-13 79.3 136 36.8
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 1.0e-12 77.4 96 47.9
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 1.7e-12 76.6 118 36.4
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 3.9e-12 75.5 99 46.5
FAN20G1711 Fragaria x ananassa HOM05D000358 ORTHO05D009346 2.8e-10 69.3 138 34.1
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 3.6e-10 68.9 43 69.8
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 3.6e-10 68.9 43 69.8
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 8.1e-10 67.8 43 69.8
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 3.1e-09 65.9 141 37.6
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 1.5e-08 63.5 90 44.4
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 2.9e-07 59.3 87 36.8


User provided reference genes

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