Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 0.0e+00 1772.3 923 100.0
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 0.0e+00 1639.8 923 93.2
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 0.0e+00 1434.9 928 83.4
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1163.7 923 67.1
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1161.0 915 68.0
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 0.0e+00 1148.3 952 65.1
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 0.0e+00 1139.0 891 67.7
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1137.9 915 66.2
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 0.0e+00 1127.9 905 66.0
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 0.0e+00 1125.5 911 66.2
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1120.5 905 65.9
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1117.1 919 66.2
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 0.0e+00 1114.4 924 65.2
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1113.2 905 65.5
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1112.4 926 64.5
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 0.0e+00 1107.8 904 65.3
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 0.0e+00 1093.2 917 65.0
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 0.0e+00 1092.4 893 65.3
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 0.0e+00 1092.0 911 64.2
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1084.7 899 65.4
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 0.0e+00 1078.9 914 63.2
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1075.8 913 64.3
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 3.7e-310 1068.1 923 64.0
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 8.1e-310 1067.0 929 62.4
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 1.4e-309 1066.2 920 63.0
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 1.2e-308 1063.1 912 64.3
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 3.8e-307 1058.1 935 62.1
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.9e-307 1057.7 924 63.5
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 6.5e-307 1057.4 937 61.8
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 2.3e-304 1048.9 919 62.7
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.9e-304 1048.1 904 62.7
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 6.7e-304 1047.3 902 64.3
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 1.3e-302 1043.1 913 63.6
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 1.8e-301 1039.3 886 63.9
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 7.2e-298 1027.3 929 60.7
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 6.1e-297 1024.2 897 62.5
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 6.7e-296 1020.8 897 62.4
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 2.5e-295 1018.8 896 61.3
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 7.4e-295 1017.3 903 62.0
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 1.4e-293 1013.1 919 61.3
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 5.3e-293 1011.1 897 62.3
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 1.7e-291 1006.1 896 61.6
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 2.5e-290 1002.3 926 59.3
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.1e-289 999.2 910 59.5
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 2.7e-289 998.8 906 60.3
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 6.1e-289 997.7 893 61.8
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 6.1e-289 997.7 865 62.9
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 6.7e-288 994.2 912 59.1
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.5e-287 992.3 909 59.0
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 4.3e-287 991.5 888 62.0
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 4.5e-284 981.5 931 59.6
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.7e-283 979.5 922 58.0
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 8.5e-283 977.2 874 59.4
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 2.7e-281 972.2 967 56.8
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 1.0e-280 970.3 894 58.7
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 1.5e-279 966.5 899 59.1
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 1.8e-277 959.5 930 57.0
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 5.3e-277 958.0 925 57.8
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 7.0e-277 957.6 890 59.2
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.5e-276 954.9 906 57.6
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 2.9e-275 952.2 890 58.3
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 6.5e-275 951.0 890 58.3
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 1.5e-274 949.9 913 57.7
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 5.5e-274 948.0 911 58.1
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.6e-273 946.4 918 57.3
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 2.7e-273 945.7 872 59.2
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 3.6e-273 945.3 891 57.7
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 4.0e-272 941.8 913 57.1
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 5.2e-272 941.4 913 57.2
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 5.2e-272 941.4 913 57.2
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 2.0e-271 939.5 926 56.7
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 3.3e-271 938.7 833 61.0
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 2.8e-270 935.6 875 58.9
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 6.3e-270 934.5 905 57.0
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 8.2e-270 934.1 892 56.2
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 8.2e-270 934.1 916 57.4
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 3.1e-269 932.2 923 56.2
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 7.0e-269 931.0 925 56.0
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 4.2e-266 921.8 916 56.4
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 8.8e-264 914.1 890 56.6
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 5.4e-261 904.8 795 61.8
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 3.5e-260 902.1 842 61.0
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 2.9e-259 899.0 921 55.4
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.0e-255 886.3 910 55.3
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 1.8e-253 879.8 751 62.6
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 5.9e-252 874.8 868 55.8
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 1.1e-250 870.5 792 61.1
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 8.0e-249 864.4 856 53.7
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.3e-246 857.1 886 54.6
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 3.3e-242 842.4 474 93.5
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 5.6e-242 841.6 854 54.9
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 2.6e-231 806.2 651 66.2
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 1.5e-226 790.4 917 51.9
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 8.4e-222 774.6 805 53.2
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.9e-221 773.5 774 55.6
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 2.4e-216 756.5 429 91.6
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 2.4e-208 729.9 550 68.4
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 2.5e-202 709.9 667 58.9
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.6e-193 680.6 549 63.9
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 1.6e-185 654.1 890 44.2
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 2.0e-183 647.1 713 54.6
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 3.4e-183 646.4 664 52.6
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 1.4e-181 641.0 876 43.8
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 5.7e-170 602.4 903 38.9
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.7e-169 600.9 901 38.6
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 2.0e-162 577.4 801 46.8
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 7.5e-154 548.9 940 38.4
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 8.3e-137 492.3 480 59.8
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 1.4e-107 395.2 950 32.0
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.1e-107 394.0 412 55.1
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 9.2e-104 382.5 912 31.4
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 6.0e-103 379.8 346 58.7
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 3.9e-102 377.1 984 29.8
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 4.2e-96 357.1 308 59.7
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 8.7e-94 349.4 289 61.6
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.7e-94 349.4 454 48.7
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 3.5e-87 327.4 945 28.4
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.4e-83 315.5 343 54.5
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 3.9e-78 297.4 268 58.2
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.2e-71 275.8 451 43.0
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 3.9e-70 270.8 216 66.7
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.4e-66 257.7 253 57.3
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.3e-61 241.1 180 70.0
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 3.6e-55 221.1 163 72.4
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 2.3e-54 218.4 396 40.4
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 8.2e-52 209.9 194 59.8
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 8.5e-49 199.9 269 42.4
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 7.4e-45 186.8 356 37.9
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 1.3e-44 186.0 133 72.2
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 1.2e-39 169.5 144 62.5
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 1.8e-35 155.6 170 57.1
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 3.1e-35 154.8 126 65.9
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 7.0e-35 153.7 178 45.5
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.5e-29 136.0 97 73.2
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 7.0e-27 127.1 97 67.0
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 3.5e-26 124.8 142 52.1
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.3e-17 95.5 78 65.4
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 8.6e-17 93.6 95 56.8
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 3.6e-15 88.2 91 54.9
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 1.8e-14 85.9 90 54.4
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 6.8e-14 84.0 119 46.2
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-13 83.2 48 79.2
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 9.8e-13 80.1 67 64.2
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.4e-12 77.4 106 44.3
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.4e-11 75.5 154 27.9
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 5.4e-11 74.3 63 58.7
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 7.8e-10 70.5 60 61.7


User provided reference genes

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