Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 7.3e-169 597.4 369 100.0
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 5.6e-161 571.2 369 94.9
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 4.0e-159 565.1 370 94.6
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 1.7e-133 479.9 371 72.2
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 1.7e-133 479.9 368 75.5
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 3.8e-133 478.8 363 69.1
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 3.8e-133 478.8 363 69.1
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 1.1e-132 477.2 371 69.0
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 1.2e-131 473.8 369 71.3
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 1.6e-131 473.4 363 68.3
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 5.1e-130 468.4 362 80.1
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 8.7e-130 467.6 366 78.7
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 8.7e-130 467.6 374 79.4
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 1.5e-129 466.8 357 78.2
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 1.5e-129 466.8 357 79.3
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 1.5e-129 466.8 364 76.4
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.9e-129 466.5 353 74.8
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 2.5e-129 466.1 351 71.5
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 4.3e-129 465.3 375 77.6
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 5.7e-129 464.9 366 76.5
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 9.7e-129 464.2 366 73.0
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 1.3e-128 463.8 371 66.3
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 1.6e-128 463.4 369 76.4
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 2.2e-128 463.0 367 76.6
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 2.2e-128 463.0 352 78.4
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 2.8e-128 462.6 369 79.4
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 2.8e-128 462.6 358 78.8
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 3.7e-128 462.2 351 81.2
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 3.7e-128 462.2 377 71.4
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 6.3e-128 461.5 353 80.5
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 6.3e-128 461.5 371 78.7
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 6.3e-128 461.5 369 83.5
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 1.4e-127 460.3 351 84.3
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.8e-127 459.9 370 80.5
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 3.1e-127 459.1 351 81.8
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 3.1e-127 459.1 377 75.9
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 6.9e-127 458.0 376 77.7
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 9.0e-127 457.6 344 80.8
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 3.4e-126 455.7 339 80.2
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 5.9e-126 454.9 370 79.2
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 1.0e-125 454.1 354 70.3
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 1.0e-125 454.1 368 77.4
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 2.2e-125 453.0 353 77.6
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 5.0e-125 451.8 378 76.5
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 8.5e-125 451.1 358 77.4
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 8.5e-125 451.1 379 72.3
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 1.4e-124 450.3 347 81.0
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 1.9e-124 449.9 386 76.9
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 1.9e-124 449.9 361 77.3
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 2.5e-124 449.5 369 80.8
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 2.5e-124 449.5 366 75.7
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 3.2e-124 449.1 360 72.2
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 9.4e-124 447.6 350 80.9
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 9.4e-124 447.6 359 84.7
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 1.6e-123 446.8 349 80.8
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 6.1e-123 444.9 357 64.4
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 7.9e-123 444.5 344 78.5
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 1.8e-122 443.4 385 76.4
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 2.5e-121 439.5 367 76.3
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 3.3e-121 439.1 372 70.2
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 3.3e-121 439.1 365 65.8
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 2.8e-120 436.0 357 71.7
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 3.7e-120 435.6 349 64.2
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 1.4e-119 433.7 352 71.9
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 1.4e-119 433.7 352 71.9
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 1.8e-119 433.3 376 69.4
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 1.8e-119 433.3 376 69.4
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 3.1e-119 432.6 344 64.8
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.2e-118 430.6 344 64.5
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 2.0e-118 429.9 375 72.8
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 2.0e-118 429.9 375 76.8
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 2.6e-118 429.5 352 71.6
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 3.4e-118 429.1 350 79.7
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 3.4e-118 429.1 403 58.8
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 1.0e-117 427.6 330 72.4
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.3e-117 427.2 352 75.0
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 3.8e-117 425.6 342 72.8
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 5.0e-117 425.2 374 73.5
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 5.0e-117 425.2 344 77.9
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 6.5e-117 424.9 344 82.0
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 2.5e-116 422.9 350 71.7
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 2.5e-116 422.9 381 65.6
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 7.2e-116 421.4 348 77.0
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 7.2e-116 421.4 348 76.4
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 7.2e-116 421.4 348 77.0
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 3.6e-115 419.1 384 72.9
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 7.9e-115 417.9 333 66.7
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 1.4e-114 417.2 356 80.6
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 3.9e-114 415.6 352 76.4
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 3.9e-114 415.6 352 75.6
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.3e-113 412.5 360 72.5
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 9.7e-113 411.0 355 61.7
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.7e-112 409.1 360 72.2
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 4.8e-112 408.7 413 59.6
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.8e-112 408.7 361 73.4
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.1e-111 406.0 366 71.0
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 7.0e-111 404.8 318 82.1
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 1.0e-109 401.0 371 59.3
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 5.0e-109 398.7 357 71.4
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 2.5e-108 396.4 333 64.9
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 9.4e-108 394.4 343 67.6
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 2.0e-105 386.7 358 67.3
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 5.7e-105 385.2 349 58.2
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 7.4e-105 384.8 336 61.6
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 4.1e-103 379.0 331 59.5
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 3.8e-101 372.5 348 64.9
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.8e-101 372.5 348 64.1
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 3.8e-101 372.5 303 64.4
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 5.0e-101 372.1 295 75.6
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 2.1e-99 366.7 380 64.2
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.1e-99 365.2 368 64.9
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.0e-98 362.8 348 58.3
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 1.3e-96 357.5 371 58.2
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.1e-95 352.4 383 57.4
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 5.9e-94 348.6 309 68.9
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 8.5e-93 344.7 360 61.4
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.2e-86 324.3 355 53.2
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 5.9e-86 322.0 353 52.7
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 5.9e-86 322.0 347 52.2
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 5.0e-85 318.9 340 48.8
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 1.1e-84 317.8 175 85.7
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 4.2e-84 315.8 355 49.3
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.6e-83 313.9 329 51.4
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 9.8e-81 304.7 180 80.0
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.6e-78 297.4 344 47.1
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 7.3e-76 288.5 310 58.4
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.5e-73 280.8 307 48.5
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 2.0e-65 253.8 138 87.0
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 7.8e-62 241.9 243 70.0
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 3.0e-61 240.0 237 71.7
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 1.9e-55 220.7 123 83.7
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 1.2e-54 218.0 120 85.0
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 2.3e-53 213.8 249 70.3
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.2e-46 191.4 113 75.2
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-45 188.0 167 56.3
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 4.8e-43 179.5 329 36.2
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 2.0e-41 174.1 226 49.1
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 2.6e-41 173.7 91 84.6
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 8.7e-37 158.7 115 75.7
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 7.4e-28 129.0 259 33.2
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 7.4e-28 129.0 108 64.8
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 1.7e-24 117.9 66 83.3
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 9.3e-15 85.5 71 53.5
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 1.3e-13 81.6 47 83.0


User provided reference genes

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