Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G018350 Citrullus lanatus HOM05D006891 ORTHO05D008671 3.1e-179 631.7 322 100.0
MELO3C026160.2 Cucumis melo HOM05D006891 ORTHO05D008671 2.6e-162 575.5 322 92.9
Sed0026594 Sechium edule HOM05D006891 ORTHO05D008671 1.2e-159 566.6 330 89.4
CsaV3_1G000080 Cucumis sativus L. HOM05D006891 ORTHO05D008671 2.3e-142 509.2 271 95.6
COL.COLO4_37249 Corchorus olitorius HOM05D006891 ORTHO05D008671 1.6e-127 459.9 330 75.2
Gorai.001G054400 Gossypium raimondii HOM05D006891 ORTHO05D008671 4.6e-127 458.4 333 73.9
PGR142G3013 Punica granatum HOM05D006891 ORTHO05D008671 6.0e-127 458.0 282 82.3
Duzib205G0665 Durio zibethinus HOM05D006891 ORTHO05D008671 1.0e-126 457.2 330 74.2
Gohir.A07G047000 Gossypium hirsutum HOM05D006891 ORTHO05D008671 1.0e-126 457.2 333 73.9
Gohir.D07G051300 Gossypium hirsutum HOM05D006891 ORTHO05D008671 1.3e-126 456.8 333 73.6
Thecc.03G139800 Theobroma cacao HOM05D006891 ORTHO05D008671 1.8e-126 456.4 330 74.2
Actinidia18305 Actinidia chinensis HOM05D006891 ORTHO05D008671 2.3e-126 456.1 330 73.6
Atru.chr6.1910 Acer truncatum HOM05D006891 ORTHO05D008671 3.0e-126 455.7 333 74.2
Cpa.g.sc13.164 Carica papaya HOM05D006891 ORTHO05D008671 1.1e-125 453.8 291 80.4
Haze_07102 Corylus avellana HOM05D006891 ORTHO05D008671 1.1e-125 453.8 330 73.3
Eucgr.G02043 Eucalyptus grandis HOM05D006891 ORTHO05D008671 1.9e-125 453.0 334 72.2
MBI04_g35563_MAGBIO Magnolia biondii HOM05D006891 ORTHO05D008671 3.3e-125 452.2 321 72.6
Cfa018711 Carpinus fangiana HOM05D006891 ORTHO05D008671 4.3e-125 451.8 330 72.7
Glyma.08G007900 Glycine max HOM05D006891 ORTHO05D008671 4.3e-125 451.8 300 78.3
TWI39G1149 Tripterygium wilfordii HOM05D006891 ORTHO05D008671 7.4e-125 451.1 308 76.6
Dinv13725 Davidia involucrata HOM05D006891 ORTHO05D008671 1.6e-124 449.9 334 72.5
Glyma.05G200500 Glycine max HOM05D006891 ORTHO05D008671 3.7e-124 448.7 327 72.2
CiPaw.12G001000 Carya illinoinensis HOM05D006891 ORTHO05D008671 4.8e-124 448.4 333 73.0
Ciclev10032123m.g Citrus clementina HOM05D006891 ORTHO05D008671 4.8e-124 448.4 331 74.6
QL10p000565 Quercus lobata HOM05D006891 ORTHO05D008671 3.1e-123 445.7 332 72.3
TAR475G0005 Trochodendron aralioides HOM05D006891 ORTHO05D008671 6.9e-123 444.5 332 69.6
Nn3g16285 Nelumbo nucifera HOM05D006891 ORTHO05D008671 9.0e-123 444.1 330 70.9
VMungo0251G3529 Vigna mungo HOM05D006891 ORTHO05D008671 1.5e-122 443.4 327 70.6
Solyc03g118240.4 Solanum lycopersicum HOM05D006891 ORTHO05D008671 5.8e-122 441.4 305 75.4
Prupe.5G142500 Prunus persica HOM05D006891 ORTHO05D008671 7.6e-122 441.0 332 72.3
PGSC0003DMG400014243 Solanum tuberosum HOM05D006891 ORTHO05D008671 7.6e-122 441.0 289 78.2
CAN.G843.14 Capsicum annuum HOM05D006891 ORTHO05D008671 1.0e-121 440.7 285 78.2
Nitab4.5_0000976g0010 Nicotiana tabacum HOM05D006891 ORTHO05D008671 1.0e-121 440.7 295 76.3
MSTRG.4642 Avicennia marina HOM05D006891 ORTHO05D008671 1.3e-121 440.3 293 76.5
Sopen03g037150 Solanum pennellii HOM05D006891 ORTHO05D008671 1.3e-121 440.3 304 74.3
CSS0004907 Camellia sinensis var. sinensis HOM05D006891 ORTHO05D008671 2.2e-121 439.5 331 71.3
Lalb_Chr13g0296991 Lupinus albus HOM05D006891 ORTHO05D008671 2.2e-121 439.5 300 75.7
Phvul.002G281900 Phaseolus vulgaris HOM05D006891 ORTHO05D008671 2.2e-121 439.5 327 69.7
SGA_v2.0_scaffold40G15677 Striga asiatica HOM05D006891 ORTHO05D008671 2.2e-121 439.5 272 81.2
Carub.0007s1596 Capsella rubella HOM05D006891 ORTHO05D008671 8.4e-121 437.6 287 76.0
CARHR232470 Cardamine hirsuta HOM05D006891 ORTHO05D008671 8.4e-121 437.6 276 78.6
Lj4g0024376 Lotus japonicus HOM05D006891 ORTHO05D008671 8.4e-121 437.6 320 71.9
Thhalv10025780m.g Eutrema salsugineum HOM05D006891 ORTHO05D008671 1.1e-120 437.2 276 77.5
vmacro19179 Vaccinium macrocarpon HOM05D006891 ORTHO05D008671 1.1e-120 437.2 321 71.3
FAN04G1325 Fragaria x ananassa HOM05D006891 ORTHO05D008671 1.4e-120 436.8 309 74.4
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 1.4e-120 436.8 291 77.0
MD14G1147900 Malus domestica HOM05D006891 ORTHO05D008671 1.4e-120 436.8 326 70.9
Rhsim08G0196800 Rhododendron simsii HOM05D006891 ORTHO05D008671 1.4e-120 436.8 316 72.8
MD06G1131500 Malus domestica HOM05D006891 ORTHO05D008671 2.5e-120 436.0 326 71.8
FvH4_5g09430 Fragaria vesca HOM05D006891 ORTHO05D008671 4.2e-120 435.3 309 74.1
FAN18G0906 Fragaria x ananassa HOM05D006891 ORTHO05D008671 4.2e-120 435.3 267 81.3
BcaNung03997 Brassica carinata HOM05D006891 ORTHO05D008671 5.5e-120 434.9 295 73.6
Aa31LG7G10590 Aethionema arabicum HOM05D006891 ORTHO05D008671 1.2e-119 433.7 273 78.0
Sabra12G0078900 Salix brachista HOM05D006891 ORTHO05D008671 1.6e-119 433.3 321 70.7
Migut.D01186 Erythranthe guttata HOM05D006891 ORTHO05D008671 2.7e-119 432.6 310 72.9
AL7G28070 Arabidopsis lyrata HOM05D006891 ORTHO05D008671 7.9e-119 431.0 287 75.3
BcaC09g50812 Brassica carinata HOM05D006891 ORTHO05D008671 1.3e-118 430.3 273 76.6
BraA01t01588Z Brassica rapa HOM05D006891 ORTHO05D008671 2.3e-118 429.5 273 76.6
Sp7g23060 Schrenkiella parvula HOM05D006891 ORTHO05D008671 2.3e-118 429.5 276 76.4
AT4G25080 Arabidopsis thaliana HOM05D006891 ORTHO05D008671 3.0e-118 429.1 287 75.3
A01p16330 Brassica napus HOM05D006891 ORTHO05D008671 3.0e-118 429.1 273 76.6
C01p20480 Brassica napus HOM05D006891 ORTHO05D008671 3.9e-118 428.7 273 76.2
BolC1t01979H Brassica oleracea HOM05D006891 ORTHO05D008671 3.9e-118 428.7 273 76.2
Aqoxy5G03144 Aquilegia oxysepala HOM05D006891 ORTHO05D008671 5.1e-118 428.3 323 68.7
Peaxi162Scf00314g00625 Petunia axillaris HOM05D006891 ORTHO05D008671 5.1e-118 428.3 315 72.1
RcHm_v2.0_Chr7g0188761 Rosa chinensis HOM05D006891 ORTHO05D008671 5.1e-118 428.3 309 72.8
Sc04g0000210 Simmondsia chinensis HOM05D006891 ORTHO05D008671 5.1e-118 428.3 285 77.2
BraA03t14640Z Brassica rapa HOM05D006891 ORTHO05D008671 2.5e-117 426.0 276 76.1
Lsat_1_v5_gn_4_84561 Lactuca sativa HOM05D006891 ORTHO05D008671 3.3e-117 425.6 278 77.0
Lj9C486T5 Lonicera japonica HOM05D006891 ORTHO05D008671 3.3e-117 425.6 334 69.5
C07p53960 Brassica napus HOM05D006891 ORTHO05D008671 5.7e-117 424.9 276 75.7
Manes.06G126400 Manihot esculenta HOM05D006891 ORTHO05D008671 5.7e-117 424.9 328 70.1
DCAR_025652 Daucus carota HOM05D006891 ORTHO05D008671 9.7e-117 424.1 292 74.0
A03p55730 Brassica napus HOM05D006891 ORTHO05D008671 3.7e-116 422.2 276 75.4
CDE11G0769 Ceratophyllum demersum HOM05D006891 ORTHO05D008671 1.8e-115 419.9 284 73.2
PSO017G2699 Papaver somniferum HOM05D006891 ORTHO05D008671 3.1e-115 419.1 342 63.7
arahy.Tifrunner.gnm1.ann1.5G0V08 Arachis hypogaea HOM05D006891 ORTHO05D008671 5.3e-115 418.3 332 69.0
HanXRQChr11g0350211 Helianthus annuus HOM05D006891 ORTHO05D008671 2.6e-114 416.0 301 72.4
PSO478G3300 Papaver somniferum HOM05D006891 ORTHO05D008671 4.5e-114 415.2 343 64.1
HanXRQChr09g0273851 Helianthus annuus HOM05D006891 ORTHO05D008671 7.7e-114 414.5 301 72.1
BolC7t45886H Brassica oleracea HOM05D006891 ORTHO05D008671 2.9e-113 412.5 276 74.3
Psat7g039320 Pisum sativum HOM05D006891 ORTHO05D008671 1.9e-112 409.8 323 68.7
Medtr8g100120 Medicago truncatula HOM05D006891 ORTHO05D008671 7.2e-112 407.9 327 66.7
CANSAT56G0245 Cannabis sativa HOM05D006891 ORTHO05D008671 1.2e-111 407.1 231 85.7
CANSAT56G1732 Cannabis sativa HOM05D006891 ORTHO05D008671 1.2e-111 407.1 231 85.7
TPR.G12963 Trifolium pratense HOM05D006891 ORTHO05D008671 4.6e-111 405.2 278 74.5
ECA232G2217 Erigeron canadensis HOM05D006891 ORTHO05D008671 7.9e-111 404.4 251 79.3
AUR62009532 Chenopodium quinoa HOM05D006891 ORTHO05D008671 3.9e-110 402.1 260 77.7
HPP92_020658 Vanilla planifolia HOM05D006891 ORTHO05D008671 3.1e-107 392.5 289 68.2
Hund02505 Selenicereus undatus HOM05D006891 ORTHO05D008671 9.1e-107 391.0 233 83.3
GSVIVG01008643001 Vitis vinifera HOM05D006891 ORTHO05D008671 9.1e-107 391.0 335 66.0
arahy.Tifrunner.gnm1.ann1.0QZ944 Arachis hypogaea HOM05D006891 ORTHO05D008671 2.0e-106 389.8 316 68.4
unitig_736.g22830 Utricularia gibba HOM05D002810 ORTHO05D003983 2.0e-106 389.8 278 71.6
SalBow1G6359 Salvia bowleyana HOM05D006891 ORTHO05D008671 3.4e-106 389.0 300 68.0
Potri.012G106600 Populus trichocarpa HOM05D006891 ORTHO05D008671 1.4e-104 383.6 230 81.7
THA.LOC104811559 Tarenaya hassleriana HOM05D006891 ORTHO05D008671 5.5e-104 381.7 275 70.5
ATR0579G076 Amborella trichopoda HOM05D006891 ORTHO05D008671 5.1e-102 375.2 324 62.7
AUR62041695 Chenopodium quinoa HOM05D006891 ORTHO05D008671 7.0e-99 364.8 329 61.4
SEGI_33809 Sequoiadendron giganteum HOM05D006891 ORTHO05D008671 1.2e-98 364.0 269 66.5
AagrBONN_evm.TU.Sc2ySwM_368.2875 Anthoceros agrestis HOM05D006891 ORTHO05D008671 1.5e-96 357.1 269 65.1
Pp3c12_24890 Physcomitrium patens HOM05D006891 ORTHO05D008671 1.3e-92 344.0 267 63.7
SMO115G0098 Selaginella moellendorffii HOM05D006891 ORTHO05D008671 2.2e-92 343.2 324 56.8
Ah.11g046860 Amaranthus hybridus HOM05D006891 ORTHO05D008671 4.8e-92 342.0 207 81.2
Mapoly0112s0034 Marchantia polymorpha HOM05D006891 ORTHO05D008671 8.5e-89 331.3 279 60.6
Cre12.g498550 Chlamydomonas reinhardtii HOM05D006891 ORTHO05D008671 1.3e-84 317.4 267 58.1
EL10Ac5g11293 Beta vulgaris HOM05D006891 ORTHO05D008671 1.7e-84 317.0 264 62.9
Zm00001eb269720 Zea mays HOM05D006891 ORTHO05D008671 2.8e-84 316.2 245 65.3
MCO11G158 Micromonas commoda HOM05D006891 ORTHO05D008671 2.7e-74 283.1 280 53.6
Ca_16812_v3 Cicer arietinum L. HOM05D006891 ORTHO05D008671 1.8e-67 260.4 234 65.0
unitig_899.g14822 Utricularia gibba HOM05D002810 ORTHO05D003983 2.0e-66 256.9 266 54.9
AUR62044303 Chenopodium quinoa HOM05D006891 ORTHO05D008671 3.2e-59 233.0 241 54.8
Potri.015G105702 Populus trichocarpa HOM05D006891 ORTHO05D008671 2.0e-58 230.3 229 55.9
Hma1.2p1_0577F.1_g182340 Hydrangea macrophylla HOM05D006891 ORTHO05D008671 1.1e-54 218.0 170 67.1
Dinv23219 Davidia involucrata HOM05D006891 ORTHO05D008671 1.6e-50 204.1 160 70.0
Os06g0132400 Oryza sativa ssp. japonica HOM05D006891 ORTHO05D008671 1.8e-38 164.1 103 73.8
SGA_v2.0_scaffold377G50317 Striga asiatica HOM05D006891 ORTHO05D008671 1.6e-23 114.4 71 76.1
CBR_g32078 Chara braunii HOM05D006891 ORTHO05D008671 2.1e-18 97.4 70 64.3
Eucgr.G02044 Eucalyptus grandis HOM05D006891 ORTHO05D008671 1.5e-08 64.7 136 39.0
BraA03t14643Z Brassica rapa HOM05D006891 ORTHO05D033303 6.3e-07 59.3 64 54.7
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 6.9e-06 55.8 125 31.2


User provided reference genes

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