Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 7.0e-93 344.0 177 100.0
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 2.7e-84 315.5 177 89.8
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 1.7e-83 312.8 177 88.1
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.1e-77 293.5 241 67.2
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 6.8e-64 247.7 171 74.3
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 2.0e-63 246.1 163 74.2
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.6e-63 245.7 162 76.5
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 3.4e-63 245.4 171 73.7
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 7.5e-63 244.2 161 77.0
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 1.3e-62 243.4 171 73.7
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 1.3e-62 243.4 173 72.3
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 2.2e-62 242.7 162 77.2
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 7.1e-61 237.7 171 71.9
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 7.1e-61 237.7 161 73.3
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 1.0e-59 233.8 164 73.2
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.0e-59 233.8 156 73.7
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 2.3e-59 232.6 173 67.6
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 3.0e-59 232.3 162 69.1
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 3.0e-59 232.3 162 69.1
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 3.9e-59 231.9 162 69.8
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 5.1e-59 231.5 172 68.6
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 5.1e-59 231.5 169 73.4
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 8.6e-59 230.7 162 71.0
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 8.6e-59 230.7 165 70.9
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 1.5e-58 229.9 174 68.4
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 1.5e-58 229.9 162 69.8
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.5e-58 229.9 162 74.1
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 2.5e-58 229.2 172 68.6
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.3e-58 228.8 173 66.5
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 5.6e-58 228.0 167 67.7
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 5.6e-58 228.0 167 67.7
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 7.3e-58 227.6 171 67.8
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.6e-57 226.5 176 68.2
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 1.6e-57 226.5 170 68.8
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 2.8e-57 225.7 163 71.8
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 3.6e-57 225.3 161 72.7
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 4.7e-57 224.9 158 71.5
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 1.8e-56 223.0 152 72.4
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 5.2e-56 221.5 173 65.3
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 5.2e-56 221.5 173 64.2
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 8.9e-56 220.7 167 67.1
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 8.9e-56 220.7 169 67.5
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 8.9e-56 220.7 173 67.1
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 2.0e-55 219.5 161 68.9
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 2.6e-55 219.2 173 64.7
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 2.6e-55 219.2 168 68.5
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 3.4e-55 218.8 160 70.0
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 4.4e-55 218.4 173 63.6
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.4e-55 218.4 170 67.6
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 5.8e-55 218.0 162 66.7
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 5.8e-55 218.0 166 63.3
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 5.8e-55 218.0 166 63.3
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 5.8e-55 218.0 165 63.6
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 7.6e-55 217.6 164 67.1
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 9.9e-55 217.2 168 62.5
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 9.9e-55 217.2 159 70.4
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 9.9e-55 217.2 159 71.1
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 9.9e-55 217.2 159 71.1
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.7e-54 216.5 162 67.3
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 1.7e-54 216.5 166 62.7
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 2.2e-54 216.1 162 67.3
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.9e-54 215.7 159 69.8
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 3.7e-54 215.3 162 67.3
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 3.7e-54 215.3 173 63.0
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 4.9e-54 214.9 164 64.0
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 6.4e-54 214.5 165 63.0
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 1.1e-53 213.8 164 64.0
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.1e-53 213.8 161 68.3
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.1e-53 213.8 165 63.0
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 1.4e-53 213.4 166 62.0
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 1.4e-53 213.4 166 62.0
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 1.4e-53 213.4 166 62.0
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 1.9e-53 213.0 164 64.0
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 2.4e-53 212.6 158 66.5
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 2.4e-53 212.6 167 62.3
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 3.2e-53 212.2 165 64.2
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 5.4e-53 211.5 165 63.0
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 5.4e-53 211.5 164 65.2
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 7.1e-53 211.1 158 68.4
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 1.2e-52 210.3 153 65.4
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.6e-52 209.9 165 65.5
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 1.6e-52 209.9 161 64.6
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 7.8e-52 207.6 162 64.8
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.0e-51 207.2 147 66.7
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 1.3e-51 206.8 164 65.2
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 2.3e-51 206.1 165 61.2
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.0e-51 205.7 171 64.9
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 3.9e-51 205.3 140 72.1
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 1.9e-50 203.0 164 64.0
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 2.5e-50 202.6 161 61.5
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 5.6e-50 201.4 164 62.2
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 1.2e-49 200.3 167 60.5
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 6.2e-49 198.0 199 56.3
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.8e-48 196.4 135 74.1
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.2e-47 193.7 142 69.0
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 5.8e-47 191.4 141 69.5
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 9.9e-47 190.7 159 61.6
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 2.9e-46 189.1 147 68.7
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 6.0e-44 181.4 147 59.2
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 1.3e-43 180.3 136 69.9
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 1.7e-43 179.9 139 66.2
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 3.9e-43 178.7 164 61.0
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 8.7e-43 177.6 112 79.5
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 8.7e-43 177.6 172 56.4
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.1e-42 177.2 147 58.5
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.5e-42 176.8 146 63.0
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 1.5e-39 166.8 133 62.4
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 2.0e-39 166.4 134 65.7
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 1.3e-38 163.7 138 58.7
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 9.3e-37 157.5 106 74.5
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.1e-36 156.4 89 82.0
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 1.9e-34 149.8 135 61.5
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.1e-32 144.1 85 81.2
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 5.8e-31 138.3 108 63.0
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.2e-30 136.3 78 83.3
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 6.7e-27 124.8 120 51.7
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 1.5e-26 123.6 134 56.7
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.1e-25 119.8 80 70.0
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 4.8e-25 118.6 163 40.5
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 6.2e-25 118.2 116 56.0
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 8.1e-25 117.9 115 54.8
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 3.8e-22 109.0 66 74.2
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 4.6e-20 102.1 55 85.5
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.7e-19 98.2 84 59.5
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 9.6e-18 94.4 51 88.2
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 3.7e-17 92.4 53 79.2
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.0e-14 84.3 59 67.8
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.7e-12 76.3 53 71.7
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 6.7e-11 71.6 85 31.8
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 8.7e-11 71.2 60 66.7
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 8.7e-11 71.2 60 66.7
AUR62027077 Chenopodium quinoa HOM05D005570 ORTHO05D007368 8.5e-06 54.7 57 50.9


User provided reference genes

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