Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 7.1e-66 254.2 172 100.0
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 2.8e-62 242.3 172 96.5
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 5.3e-53 211.5 170 93.5
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 3.1e-37 159.1 168 78.6
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 3.2e-34 149.1 186 61.3
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 2.1e-33 146.4 178 74.2
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 7.9e-33 144.4 175 73.7
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 7.9e-33 144.4 178 71.9
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 3.0e-32 142.5 180 68.3
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 5.1e-32 141.7 183 71.0
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 8.7e-32 141.0 181 72.4
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 8.7e-32 141.0 172 64.0
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 1.5e-31 140.2 181 56.9
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 9.7e-31 137.5 178 70.2
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 9.7e-31 137.5 176 68.2
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 1.6e-30 136.7 177 67.2
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 2.8e-30 136.0 155 72.3
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.3e-30 134.8 180 70.6
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 6.3e-30 134.8 177 66.1
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 8.2e-30 134.4 176 63.1
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 1.4e-29 133.7 176 69.9
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 5.3e-29 131.7 176 59.1
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 5.3e-29 131.7 174 60.3
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.9e-29 131.3 180 69.4
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 2.6e-28 129.4 175 64.6
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 2.6e-28 129.4 178 69.7
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 4.5e-28 128.6 180 62.2
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.5e-28 128.6 179 61.5
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 5.9e-28 128.3 181 66.3
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 5.9e-28 128.3 176 70.5
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 1.0e-27 127.5 176 70.5
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 2.9e-27 125.9 176 50.0
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 1.1e-26 124.0 182 65.4
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.4e-26 123.6 182 63.7
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 5.5e-26 121.7 169 65.1
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 9.3e-26 120.9 171 63.2
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.2e-25 120.6 173 64.2
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 1.6e-25 120.2 174 54.0
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 6.1e-25 118.2 173 53.8
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 1.3e-24 117.1 176 61.9
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 2.3e-24 116.3 177 47.5
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 3.0e-24 115.9 160 62.5
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.1e-24 115.2 171 63.7
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 5.1e-24 115.2 174 60.9
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 8.7e-24 114.4 171 63.7
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 8.7e-24 114.4 171 63.7
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.1e-23 114.0 174 66.7
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 1.5e-23 113.6 185 52.4
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 1.5e-23 113.6 185 57.8
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 3.3e-23 112.5 169 47.3
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.3e-22 110.5 174 45.4
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.7e-22 110.2 174 50.6
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 2.2e-22 109.8 175 58.9
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.8e-22 109.4 174 44.8
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 2.8e-22 109.4 172 63.4
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 2.8e-22 109.4 176 59.7
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 2.8e-22 109.4 176 59.7
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 3.7e-22 109.0 179 59.8
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 6.3e-22 108.2 172 60.5
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 8.2e-22 107.8 180 61.1
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 1.1e-21 107.5 176 63.1
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 2.4e-21 106.3 119 60.5
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 2.4e-21 106.3 177 59.3
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 5.3e-21 105.1 175 53.7
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.3e-21 105.1 174 43.1
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 5.3e-21 105.1 164 59.1
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 2.0e-20 103.2 174 60.9
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 2.0e-20 103.2 170 56.5
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 2.0e-20 103.2 172 63.4
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 3.4e-20 102.4 173 56.1
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 4.5e-20 102.1 180 58.9
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 4.5e-20 102.1 170 52.4
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 5.9e-20 101.7 173 62.4
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.7e-19 100.1 142 45.1
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 2.9e-19 99.4 172 61.6
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 2.9e-19 99.4 183 59.6
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 3.8e-19 99.0 171 47.4
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 5.0e-19 98.6 178 59.0
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.5e-19 98.2 172 42.4
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.5e-19 98.2 171 41.5
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 8.5e-19 97.8 173 63.6
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.1e-18 97.4 171 41.5
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 1.1e-18 97.4 183 59.0
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.4e-18 97.1 172 55.2
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 1.9e-18 96.7 172 49.4
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.9e-18 96.7 160 57.5
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 2.5e-18 96.3 173 60.1
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 4.2e-18 95.5 171 61.4
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 7.2e-18 94.7 168 55.4
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 9.4e-18 94.4 91 90.1
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.7e-17 92.8 116 54.3
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 4.7e-17 92.0 169 40.2
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 5.1e-16 88.6 170 39.4
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 5.1e-16 88.6 181 51.9
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.1e-16 88.6 126 49.2
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 8.8e-16 87.8 167 40.7
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 8.8e-16 87.8 171 39.8
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 8.8e-16 87.8 171 39.8
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 8.8e-16 87.8 153 42.5
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 4.4e-15 85.5 170 39.4
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 4.4e-15 85.5 170 40.0
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 5.7e-15 85.1 153 59.5
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 5.7e-15 85.1 173 58.4
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 7.4e-15 84.7 122 44.3
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 7.4e-15 84.7 122 44.3
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 9.7e-15 84.3 130 45.4
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 9.7e-15 84.3 169 38.5
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 9.7e-15 84.3 169 38.5
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 1.3e-14 84.0 169 37.9
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 1.3e-14 84.0 169 37.9
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 1.3e-14 84.0 169 37.9
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 2.2e-14 83.2 169 39.1
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 3.7e-14 82.4 170 57.6
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 4.8e-14 82.0 173 49.7
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 4.8e-14 82.0 181 52.5
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 8.2e-14 81.3 163 39.9
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 8.2e-14 81.3 200 47.0
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 1.8e-13 80.1 200 46.0
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 2.4e-13 79.7 130 43.1
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 3.1e-13 79.3 169 37.9
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 5.3e-13 78.6 86 50.0
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 5.3e-13 78.6 168 53.0
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 9.1e-13 77.8 248 42.3
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 2.0e-12 76.6 192 36.5
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 7.7e-12 74.7 170 34.1
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.2e-11 73.2 125 43.2
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 3.8e-11 72.4 126 42.1
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 2.5e-10 69.7 171 51.5
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 2.1e-09 66.6 117 47.9
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 2.1e-09 66.6 116 44.8
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 8.0e-09 64.7 172 47.7
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 1.0e-08 64.3 125 38.4
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 1.4e-08 63.9 170 55.3
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 2.2e-06 56.6 114 40.4
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 2.8e-06 56.2 170 47.1


User provided reference genes

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