Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 4.0e-273 944.1 466 100.0
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 6.9e-241 837.0 443 93.0
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 7.9e-237 823.5 433 93.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 5.7e-219 764.2 435 87.1
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.3e-183 646.7 435 73.6
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 8.0e-181 637.5 435 72.9
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 8.0e-181 637.5 435 72.6
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 7.5e-179 630.9 435 72.0
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 7.5e-179 630.9 435 72.6
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 7.5e-179 630.9 434 71.9
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 2.2e-178 629.4 435 72.6
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 3.7e-178 628.6 436 71.3
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 8.3e-178 627.5 436 72.0
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.4e-177 626.7 436 72.0
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 9.2e-177 624.0 433 71.4
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 6.0e-176 621.3 433 71.1
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.0e-175 620.5 422 72.0
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.7e-175 619.8 437 68.9
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 5.6e-174 614.8 441 69.8
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 9.5e-174 614.0 435 70.6
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 2.1e-173 612.8 433 68.6
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.8e-173 612.5 420 71.9
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.8e-172 609.8 436 70.9
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 2.3e-172 609.4 435 70.3
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 3.1e-172 609.0 435 69.9
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 4.0e-172 608.6 439 67.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 4.0e-172 608.6 436 70.9
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.5e-171 606.7 434 70.3
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 7.6e-171 604.4 436 69.5
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 7.6e-171 604.4 435 68.7
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 9.9e-171 604.0 427 69.6
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 4.9e-170 601.7 433 66.3
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 2.1e-168 596.3 422 68.2
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 6.0e-168 594.7 398 74.1
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.3e-167 593.6 424 67.2
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 1.3e-167 593.6 435 67.1
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 1.7e-167 593.2 436 69.0
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 3.9e-167 592.0 436 67.0
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 6.6e-167 591.3 435 66.7
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.9e-166 589.7 434 67.5
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 3.3e-166 589.0 436 67.2
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 3.3e-166 589.0 424 67.0
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.3e-166 588.6 422 66.6
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 7.3e-166 587.8 432 67.4
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.2e-165 587.0 436 68.1
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.2e-165 587.0 436 67.9
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.7e-165 585.1 432 67.4
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 4.7e-165 585.1 421 66.5
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.1e-164 583.9 425 66.6
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.1e-164 583.9 423 66.7
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.1e-164 583.9 435 66.9
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.8e-164 583.2 423 66.4
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 3.1e-164 582.4 435 65.1
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 4.0e-164 582.0 435 66.4
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 5.2e-164 581.6 421 66.5
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 6.8e-164 581.3 435 66.4
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 8.9e-164 580.9 434 65.0
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 2.0e-163 579.7 421 66.3
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 2.6e-163 579.3 435 67.6
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 2.2e-162 576.2 461 64.6
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 3.8e-162 575.5 435 67.1
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 3.2e-161 572.4 437 66.8
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 4.2e-161 572.0 435 65.5
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 7.1e-161 571.2 435 66.0
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.2e-160 570.5 462 64.1
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 3.5e-160 568.9 504 60.3
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 3.9e-159 565.5 436 62.8
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.9e-158 563.1 396 70.2
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 3.3e-158 562.4 443 64.3
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.3e-158 562.0 397 70.0
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 7.3e-158 561.2 433 66.7
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.3e-157 560.5 397 69.8
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 2.8e-157 559.3 434 65.9
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 6.2e-157 558.1 429 63.9
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.1e-156 557.4 423 66.2
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.8e-156 556.6 444 62.8
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 3.1e-156 555.8 423 66.0
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.5e-155 553.5 431 65.9
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 2.0e-155 553.1 429 63.4
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 9.9e-155 550.8 429 63.2
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 6.4e-154 548.1 433 64.0
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 6.4e-154 548.1 431 65.7
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.4e-153 547.0 431 64.7
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.9e-153 546.6 410 67.3
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 6.0e-152 541.6 435 64.4
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 8.7e-151 537.7 488 58.2
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.5e-150 537.0 397 67.0
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.6e-150 534.3 471 60.3
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 1.8e-148 530.0 434 62.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 3.1e-148 529.3 454 62.3
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.6e-144 516.9 342 73.7
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 3.0e-143 512.7 428 62.9
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 2.5e-137 493.0 349 67.0
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 9.3e-137 491.1 433 59.6
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.3e-135 486.5 301 75.1
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 2.3e-135 486.5 319 71.5
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 6.7e-135 485.0 307 73.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 6.2e-133 478.4 320 73.8
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.0e-130 471.1 289 74.0
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 7.2e-129 464.9 422 56.6
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-125 454.1 327 67.0
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 8.2e-125 451.4 437 53.3
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.4e-124 449.9 342 64.3
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 2.9e-122 443.0 430 55.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 9.4e-121 438.0 434 52.1
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.3e-118 429.5 444 52.3
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 7.4e-118 428.3 419 53.7
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.2e-115 421.0 415 51.3
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-103 380.6 328 59.8
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.4e-100 370.2 316 57.3
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.5e-99 366.3 283 66.4
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.1e-96 355.5 310 58.7
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.3e-82 311.2 283 59.7
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.8e-76 290.8 183 69.4
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.0e-71 275.0 475 36.0
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 5.4e-68 262.7 227 54.2
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 7.3e-65 252.3 388 41.0
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 2.1e-59 234.2 582 32.1
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 4.3e-57 226.5 422 36.0
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 7.3e-49 199.1 262 46.6
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 2.9e-45 187.2 210 49.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.4e-44 184.9 134 67.2
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 9.6e-41 172.2 129 67.4
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 4.4e-38 163.3 119 69.7
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 5.1e-34 149.8 117 65.0
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 7.9e-27 125.9 133 57.1
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 3.0e-26 124.0 255 35.7
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 6.7e-26 122.9 155 49.0
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 4.6e-19 100.1 107 44.9
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 5.0e-13 80.1 60 66.7
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.3e-10 72.0 71 59.2
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 9.7e-09 65.9 119 40.3
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 1.8e-07 61.6 64 46.9


User provided reference genes

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