Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 3.2e-51 204.9 111 100.0
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.1e-43 179.9 104 91.3
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 3.2e-43 178.3 104 90.4
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 4.8e-39 164.5 106 82.1
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.4e-27 125.6 106 69.8
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 7.1e-27 124.0 108 68.5
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 9.3e-27 123.6 110 66.4
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 2.1e-26 122.5 101 68.3
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.7e-26 122.1 115 63.5
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 3.5e-26 121.7 110 66.4
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 3.9e-25 118.2 97 72.2
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 6.7e-25 117.5 114 61.4
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 8.7e-25 117.1 108 65.7
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 2.5e-24 115.5 107 66.4
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.5e-24 115.5 116 64.7
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.5e-24 115.5 100 67.0
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 4.3e-24 114.8 95 68.4
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 4.3e-24 114.8 98 66.3
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 4.3e-24 114.8 100 66.0
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.6e-24 113.6 105 64.8
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 9.6e-24 113.6 115 58.3
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 9.6e-24 113.6 100 63.0
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.6e-23 112.8 98 64.3
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.8e-23 112.1 103 66.0
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 2.8e-23 112.1 100 63.0
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 2.8e-23 112.1 100 63.0
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 3.7e-23 111.7 99 64.6
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 3.7e-23 111.7 103 65.0
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.7e-23 111.7 97 64.9
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.8e-23 111.3 105 61.9
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.2e-23 110.9 103 64.1
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 6.2e-23 110.9 103 66.0
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 6.2e-23 110.9 101 64.4
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 6.2e-23 110.9 98 63.3
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 8.2e-23 110.5 90 70.0
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.1e-22 110.2 100 63.0
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.1e-22 110.2 104 64.4
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.8e-22 109.4 102 62.7
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 2.4e-22 109.0 100 62.0
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 3.1e-22 108.6 105 63.8
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 4.0e-22 108.2 109 63.3
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 9.0e-22 107.1 95 66.3
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.0e-22 107.1 92 70.7
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 9.0e-22 107.1 106 58.5
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.2e-21 106.7 92 70.7
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.6e-21 105.5 92 69.6
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.6e-21 105.5 113 58.4
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.4e-21 105.1 105 61.0
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 7.6e-21 104.0 92 67.4
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 7.6e-21 104.0 108 59.3
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.0e-20 103.6 101 60.4
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.3e-20 103.2 101 60.4
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.3e-20 103.2 101 60.4
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.3e-20 103.2 101 60.4
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.3e-20 103.2 108 59.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 2.2e-20 102.4 105 63.8
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 4.9e-20 101.3 106 60.4
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 4.9e-20 101.3 106 60.4
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 6.5e-20 100.9 101 59.4
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 6.5e-20 100.9 92 66.3
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 6.5e-20 100.9 114 58.8
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.1e-19 100.1 105 58.1
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.4e-19 99.8 98 63.3
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 1.9e-19 99.4 104 60.6
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 1.9e-19 99.4 104 60.6
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 2.5e-19 99.0 80 70.0
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.2e-19 98.6 101 60.4
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 3.2e-19 98.6 106 58.5
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 4.2e-19 98.2 98 61.2
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 4.2e-19 98.2 130 51.5
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 7.1e-19 97.4 103 61.2
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 7.1e-19 97.4 102 61.8
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 9.3e-19 97.1 107 57.9
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 9.3e-19 97.1 89 64.0
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 9.3e-19 97.1 93 62.4
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.6e-18 96.3 101 61.4
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.6e-18 96.3 101 61.4
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 2.1e-18 95.9 86 62.8
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.7e-18 95.5 64 75.0
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.7e-18 95.5 89 62.9
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.5e-18 95.1 98 58.2
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 4.6e-18 94.7 98 57.1
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.6e-18 94.7 98 57.1
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 4.6e-18 94.7 100 55.0
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 4.6e-18 94.7 114 56.1
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.9e-18 94.0 98 57.1
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.9e-18 94.0 85 68.2
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.0e-17 93.6 139 46.8
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-17 93.2 95 64.2
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 1.8e-17 92.8 114 52.6
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 2.3e-17 92.4 115 54.8
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.3e-17 92.4 98 60.2
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.3e-17 92.4 105 54.3
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.0e-17 92.0 98 56.1
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 3.0e-17 92.0 75 69.3
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.9e-17 91.7 93 60.2
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 3.9e-17 91.7 110 54.5
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.9e-17 91.7 94 59.6
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 5.1e-17 91.3 91 60.4
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 8.7e-17 90.5 61 77.0
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 3.3e-16 88.6 105 55.2
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 3.3e-16 88.6 95 61.1
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.3e-16 88.6 76 63.2
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 1.6e-15 86.3 102 52.9
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 2.2e-15 85.9 78 62.8
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 2.2e-15 85.9 78 62.8
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 2.8e-15 85.5 87 58.6
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 3.7e-15 85.1 76 67.1
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 3.7e-15 85.1 67 68.7
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 8.2e-15 84.0 102 53.9
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 8.2e-15 84.0 111 52.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.4e-14 83.2 98 52.0
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.8e-14 82.8 67 64.2
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 6.9e-14 80.9 95 50.5
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.5e-13 79.7 92 55.4
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 2.0e-13 79.3 71 60.6
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 7.6e-13 77.4 92 50.0
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 1.0e-12 77.0 110 50.9
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 3.2e-11 72.0 96 47.9
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.6e-10 68.6 77 57.1
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 4.6e-10 68.2 56 67.9
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.1e-10 67.8 58 70.7
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.1e-10 67.8 58 70.7
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.0e-09 67.0 102 47.1
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.8e-09 66.2 58 69.0
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.0e-09 65.5 56 71.4
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 5.1e-09 64.7 80 47.5
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 3.3e-08 62.0 61 57.4
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 3.3e-08 62.0 72 55.6
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 3.3e-08 62.0 100 44.0
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 9.7e-08 60.5 91 48.4
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 1.7e-07 59.7 61 55.7
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 2.8e-07 58.9 91 46.2
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 1.4e-06 56.6 59 64.4
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.8e-06 56.2 86 45.3
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.4e-06 55.8 60 63.3
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 9.1e-06 53.9 49 59.2


User provided reference genes

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