Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G017650 Citrullus lanatus HOM05D003363 ORTHO05D003952 2.6e-163 578.6 278 100.0
CsaV3_1G000800 Cucumis sativus L. HOM05D003363 ORTHO05D003952 6.5e-53 211.8 105 90.5
MELO3C026232.2 Cucumis melo HOM05D003363 ORTHO05D003952 5.5e-52 208.8 105 89.5
Sed0017360 Sechium edule HOM05D003363 ORTHO05D003952 6.1e-51 205.3 127 75.6
CiPaw.11G012200 Carya illinoinensis HOM05D003363 ORTHO05D003952 5.5e-44 182.2 106 73.6
Prupe.5G157300 Prunus persica HOM05D003363 ORTHO05D003952 1.2e-43 181.0 105 75.2
Atru.chr9.1007 Acer truncatum HOM05D003363 ORTHO05D003952 3.6e-43 179.5 108 73.1
FAN08G1495 Fragaria x ananassa HOM05D003363 ORTHO05D003952 4.7e-43 179.1 102 76.5
FAN04G1323 Fragaria x ananassa HOM05D003363 ORTHO05D003952 1.4e-42 177.6 102 76.5
Duzib205G2021 Durio zibethinus HOM05D003363 ORTHO05D003952 2.3e-42 176.8 105 72.4
FvH4_5g07330 Fragaria vesca HOM05D003363 ORTHO05D003952 4.0e-42 176.0 102 75.5
QL10p005254 Quercus lobata HOM05D003363 ORTHO05D003952 8.8e-42 174.9 101 74.3
Cpa.g.sc4.69 Carica papaya HOM05D003363 ORTHO05D003952 1.5e-41 174.1 116 65.5
Gorai.001G061600 Gossypium raimondii HOM05D003363 ORTHO05D003952 1.5e-41 174.1 107 68.2
TAR371G0872 Trochodendron aralioides HOM05D003363 ORTHO05D003952 1.5e-41 174.1 105 70.5
Haze_07278 Corylus avellana HOM05D003363 ORTHO05D003952 2.0e-41 173.7 106 68.9
Peaxi162Scf00089g00637 Petunia axillaris HOM05D003363 ORTHO05D003952 2.0e-41 173.7 96 76.0
COL.COLO4_09264 Corchorus olitorius HOM05D005301 ORTHO05D006433 3.4e-41 172.9 105 71.4
Nitab4.5_0004750g0030 Nicotiana tabacum HOM05D003363 ORTHO05D003952 3.4e-41 172.9 96 75.0
Thecc.03G122500 Theobroma cacao HOM05D003363 ORTHO05D003952 3.4e-41 172.9 105 69.5
Hma1.2p1_0046F.1_g027570 Hydrangea macrophylla HOM05D003363 ORTHO05D003952 4.4e-41 172.6 105 67.6
PSO782G5587 Papaver somniferum HOM05D003363 ORTHO05D003952 4.4e-41 172.6 102 71.6
RcHm_v2.0_Chr7g0191231 Rosa chinensis HOM05D003363 ORTHO05D003952 4.4e-41 172.6 102 73.5
Solyc03g111370.3 Solanum lycopersicum HOM05D003363 ORTHO05D003952 4.4e-41 172.6 95 74.7
Sopen03g030500 Solanum pennellii HOM05D003363 ORTHO05D003952 4.4e-41 172.6 95 74.7
Cfa018894 Carpinus fangiana HOM05D003363 ORTHO05D003952 5.7e-41 172.2 106 68.9
Ciclev10020738m.g Citrus clementina HOM05D003363 ORTHO05D003952 7.5e-41 171.8 109 67.0
FAN18G1106 Fragaria x ananassa HOM05D003363 ORTHO05D003952 1.7e-40 170.6 102 73.5
CAN.G352.7 Capsicum annuum HOM05D003363 ORTHO05D003952 2.2e-40 170.2 97 72.2
Dinv11107 Davidia involucrata HOM05D003363 ORTHO05D003952 2.2e-40 170.2 105 68.6
MD06G1157300 Malus domestica HOM05D003363 ORTHO05D003952 2.2e-40 170.2 97 75.3
Oeu045481.1 Olea europaea HOM05D003363 ORTHO05D003952 2.2e-40 170.2 133 55.6
PSO063G7397 Papaver somniferum HOM05D003363 ORTHO05D003952 2.2e-40 170.2 97 72.2
TAR622G0704 Trochodendron aralioides HOM05D003363 ORTHO05D003952 2.2e-40 170.2 105 70.5
Manes.06G115000 Manihot esculenta HOM05D003363 ORTHO05D003952 2.8e-40 169.9 108 70.4
PGSC0003DMG400015181 Solanum tuberosum HOM05D003363 ORTHO05D003952 2.8e-40 169.9 95 74.7
TWI14G0407 Tripterygium wilfordii HOM05D003363 ORTHO05D003952 4.8e-40 169.1 97 75.3
TWI39G1178 Tripterygium wilfordii HOM05D003363 ORTHO05D003952 4.8e-40 169.1 96 75.0
GSVIVG01007546001 Vitis vinifera HOM05D003363 ORTHO05D003952 4.8e-40 169.1 105 68.6
Gorai.003G153400 Gossypium raimondii HOM05D003363 ORTHO05D003952 6.3e-40 168.7 105 67.6
Lsat_1_v5_gn_5_9541 Lactuca sativa HOM05D003363 ORTHO05D003952 6.3e-40 168.7 93 76.3
Sabra15G0112500 Salix brachista HOM05D003363 ORTHO05D003952 6.3e-40 168.7 123 60.2
Nn4g22463 Nelumbo nucifera HOM05D003363 ORTHO05D003952 8.3e-40 168.3 133 60.9
PGR044G0111 Punica granatum HOM05D003363 ORTHO05D003952 8.3e-40 168.3 105 69.5
Rhsim12G0171900 Rhododendron simsii HOM05D003363 ORTHO05D003952 8.3e-40 168.3 97 73.2
THA.LOC104821504 Tarenaya hassleriana HOM05D003363 ORTHO05D003952 8.3e-40 168.3 116 62.1
Potri.015G090300 Populus trichocarpa HOM05D003363 ORTHO05D003952 1.1e-39 167.9 123 59.3
Lj5C100T14 Lonicera japonica HOM05D003363 ORTHO05D003952 1.8e-39 167.2 93 75.3
Aqoxy5G03585 Aquilegia oxysepala HOM05D003363 ORTHO05D003952 2.4e-39 166.8 96 71.9
MSTRG.11295 Avicennia marina HOM05D003363 ORTHO05D003952 2.4e-39 166.8 93 76.3
CSS0047112 Camellia sinensis var. sinensis HOM05D003363 ORTHO05D003952 2.4e-39 166.8 97 70.1
HanXRQChr04g0100731 Helianthus annuus HOM05D003363 ORTHO05D003952 3.1e-39 166.4 96 71.9
Gohir.A07G053700 Gossypium hirsutum HOM05D003363 ORTHO05D003952 4.1e-39 166.0 106 67.9
vmacro16707 Vaccinium macrocarpon HOM05D003363 ORTHO05D003952 9.1e-39 164.9 96 70.8
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 9.1e-39 164.9 97 73.2
Gohir.D07G058100 Gossypium hirsutum HOM05D003363 ORTHO05D003952 1.2e-38 164.5 105 66.7
SalBow5G5562 Salvia bowleyana HOM05D003363 ORTHO05D003952 1.2e-38 164.5 179 50.8
SalBow5G5513 Salvia bowleyana HOM05D003363 ORTHO05D003952 1.6e-38 164.1 93 75.3
Cc04_g10450 Coffea canephora HOM05D003363 ORTHO05D003952 2.0e-38 163.7 151 52.3
CiPaw.04G032500 Carya illinoinensis HOM05D003363 ORTHO05D003952 2.7e-38 163.3 115 63.5
MBI11_g36296_MAGBIO Magnolia biondii HOM05D003363 ORTHO05D003952 2.7e-38 163.3 104 67.3
ClCG05G013160 Citrullus lanatus HOM05D003363 ORTHO05D003952 4.5e-38 162.5 96 72.9
Ciclev10016239m.g Citrus clementina HOM05D003363 ORTHO05D003952 4.5e-38 162.5 124 60.5
Eucgr.K02758 Eucalyptus grandis HOM05D003363 ORTHO05D003952 4.5e-38 162.5 121 59.5
Sc03g0006920 Simmondsia chinensis HOM05D003363 ORTHO05D003952 5.9e-38 162.2 97 70.1
Sc03g0006980 Simmondsia chinensis HOM05D003363 ORTHO05D003952 5.9e-38 162.2 97 70.1
SGA_v2.0_scaffold161G37857 Striga asiatica HOM05D003363 ORTHO05D003952 5.9e-38 162.2 93 72.0
MELO3C014840.2 Cucumis melo HOM05D003363 ORTHO05D003952 7.7e-38 161.8 130 58.5
Thecc.04G025900 Theobroma cacao HOM05D003363 ORTHO05D003952 1.3e-37 161.0 136 55.9
TPR.G37445 Trifolium pratense HOM05D003363 ORTHO05D003952 1.3e-37 161.0 97 70.1
MD14G1163900 Malus domestica HOM05D003363 ORTHO05D003952 1.7e-37 160.6 128 58.6
CsaV3_3G027390 Cucumis sativus L. HOM05D003363 ORTHO05D003952 2.9e-37 159.8 96 69.8
Potri.001G336500 Populus trichocarpa HOM05D003363 ORTHO05D003952 3.8e-37 159.5 92 71.7
Migut.I00466 Erythranthe guttata HOM05D003363 ORTHO05D003952 5.0e-37 159.1 130 60.0
Sabra16G0217300 Salix brachista HOM05D003363 ORTHO05D003952 5.0e-37 159.1 92 71.7
Medtr4g104230 Medicago truncatula HOM05D003363 ORTHO05D003952 6.5e-37 158.7 97 71.1
Sed0026914 Sechium edule HOM05D003363 ORTHO05D003952 1.1e-36 157.9 96 67.7
Ah.15g095330 Amaranthus hybridus HOM05D003363 ORTHO05D003952 1.5e-36 157.5 104 63.5
arahy.Tifrunner.gnm1.ann1.1ZZG3Z Arachis hypogaea HOM05D003363 ORTHO05D003952 1.5e-36 157.5 97 70.1
arahy.Tifrunner.gnm1.ann1.EW7TJJ Arachis hypogaea HOM05D003363 ORTHO05D003952 1.5e-36 157.5 98 69.4
DCAR_026208 Daucus carota HOM05D003363 ORTHO05D003952 1.5e-36 157.5 104 63.5
Duzib264G0961 Durio zibethinus HOM05D003363 ORTHO05D003952 1.5e-36 157.5 105 66.7
Lj4g0019567 Lotus japonicus HOM05D003363 ORTHO05D003952 1.5e-36 157.5 96 70.8
Rhsim08G0184900 Rhododendron simsii HOM05D003363 ORTHO05D003952 1.5e-36 157.5 96 68.8
Phvul.008G170300 Phaseolus vulgaris HOM05D003363 ORTHO05D003952 1.9e-36 157.1 96 69.8
COL.COLO4_29261 Corchorus olitorius HOM05D003363 ORTHO05D003952 2.5e-36 156.8 104 64.4
Os12g0233400 Oryza sativa ssp. japonica HOM05D003363 ORTHO05D003952 2.5e-36 156.8 91 69.2
VMungo0647G1398 Vigna mungo HOM05D003363 ORTHO05D003952 2.5e-36 156.8 99 68.7
Migut.I00253 Erythranthe guttata HOM05D003363 ORTHO05D003952 3.2e-36 156.4 131 58.8
ECA247G0476 Erigeron canadensis HOM05D003363 ORTHO05D003952 4.2e-36 156.0 106 66.0
FvH4_6g52420 Fragaria vesca HOM05D003363 ORTHO05D003952 4.2e-36 156.0 123 56.1
arahy.Tifrunner.gnm1.ann1.M32IQ6 Arachis hypogaea HOM05D003363 ORTHO05D003952 9.4e-36 154.8 97 69.1
CDE02G1324 Ceratophyllum demersum HOM05D003363 ORTHO05D003952 9.4e-36 154.8 87 75.9
Ca_05565_v3 Cicer arietinum L. HOM05D003363 ORTHO05D003952 9.4e-36 154.8 97 68.0
Actinidia36786 Actinidia chinensis HOM05D003363 ORTHO05D003952 1.2e-35 154.5 97 67.0
Cfa007288 Carpinus fangiana HOM05D003363 ORTHO05D003952 1.2e-35 154.5 132 56.8
Haze_14805 Corylus avellana HOM05D003363 ORTHO05D003952 1.2e-35 154.5 132 58.3
Lalb_Chr15g0081431 Lupinus albus HOM05D003363 ORTHO05D003952 1.2e-35 154.5 100 65.0
FAN02G0219 Fragaria x ananassa HOM05D003363 ORTHO05D003952 1.6e-35 154.1 123 56.1
Glyma.13G086300 Glycine max HOM05D003363 ORTHO05D003952 1.6e-35 154.1 96 66.7
Glyma.18G094500 Glycine max HOM05D003363 ORTHO05D003952 2.1e-35 153.7 88 70.5
Medtr3g052770 Medicago truncatula HOM05D003363 ORTHO05D003952 2.1e-35 153.7 137 55.5
Sp2g26400 Schrenkiella parvula HOM05D003363 ORTHO05D003952 2.1e-35 153.7 129 53.5
BcaB07g29680 Brassica carinata HOM05D003363 ORTHO05D003952 2.7e-35 153.3 109 61.5
Ca_14750_v3 Cicer arietinum L. HOM05D003363 ORTHO05D003952 2.7e-35 153.3 97 66.0
Lj6g0014345 Lotus japonicus HOM05D003363 ORTHO05D003952 2.7e-35 153.3 96 64.6
Actinidia37253 Actinidia chinensis HOM05D003363 ORTHO05D003952 3.6e-35 152.9 96 68.8
FAN05G1134 Fragaria x ananassa HOM05D003363 ORTHO05D003952 3.6e-35 152.9 123 55.3
Lalb_Chr13g0297431 Lupinus albus HOM05D003363 ORTHO05D003952 3.6e-35 152.9 94 68.1
RcHm_v2.0_Chr2g0174061 Rosa chinensis HOM05D003363 ORTHO05D003952 3.6e-35 152.9 88 72.7
Sc04g0000980 Simmondsia chinensis HOM05D003363 ORTHO05D003952 4.7e-35 152.5 96 67.7
TWI56G0847 Tripterygium wilfordii HOM05D003363 ORTHO05D003952 4.7e-35 152.5 104 59.6
Sed0001198 Sechium edule HOM05D003363 ORTHO05D003952 6.1e-35 152.1 96 68.8
VMungo0540G0103 Vigna mungo HOM05D003363 ORTHO05D003952 6.1e-35 152.1 94 66.0
Phvul.006G046100 Phaseolus vulgaris HOM05D003363 ORTHO05D003952 8.0e-35 151.8 88 69.3
Cpa.g.sc130.47 Carica papaya HOM05D003363 ORTHO05D003952 1.0e-34 151.4 88 70.5
FAN14G1266 Fragaria x ananassa HOM05D003363 ORTHO05D003952 1.0e-34 151.4 123 55.3
MD09G1018200 Malus domestica HOM05D003363 ORTHO05D003952 1.0e-34 151.4 88 71.6
A02p42640 Brassica napus HOM05D003363 ORTHO05D003952 1.4e-34 151.0 110 59.1
Eucgr.J02278 Eucalyptus grandis HOM05D003363 ORTHO05D003952 1.4e-34 151.0 106 64.2
Gohir.A05G342200 Gossypium hirsutum HOM05D003363 ORTHO05D003952 1.4e-34 151.0 105 62.9
Glyma.08G319000 Glycine max HOM05D003363 ORTHO05D003952 2.3e-34 150.2 88 69.3
Prupe.3G298900 Prunus persica HOM05D003363 ORTHO05D003952 2.3e-34 150.2 114 58.8
HPP92_021371 Vanilla planifolia HOM05D003363 ORTHO05D003952 2.3e-34 150.2 104 62.5
Zm00001eb411670 Zea mays HOM05D003363 ORTHO05D003952 2.3e-34 150.2 102 60.8
C02p62550 Brassica napus HOM05D003363 ORTHO05D003952 3.0e-34 149.8 113 56.6
BolC2t12314H Brassica oleracea HOM05D003363 ORTHO05D003952 3.0e-34 149.8 113 56.6
Psat4g062720 Pisum sativum HOM05D003363 ORTHO05D003952 3.0e-34 149.8 96 65.6
QL02p073211 Quercus lobata HOM05D003363 ORTHO05D003952 3.0e-34 149.8 132 56.8
TPR.G33745 Trifolium pratense HOM05D003363 ORTHO05D003952 3.0e-34 149.8 88 69.3
Gohir.D04G080400 Gossypium hirsutum HOM05D003363 ORTHO05D003952 4.0e-34 149.4 104 62.5
vmacro19240 Vaccinium macrocarpon HOM05D003363 ORTHO05D003952 4.0e-34 149.4 96 65.6
EL10Ac7g18071 Beta vulgaris HOM05D003363 ORTHO05D003952 5.2e-34 149.1 127 54.3
BraA02t09192Z Brassica rapa HOM05D003363 ORTHO05D003952 8.8e-34 148.3 132 50.8
CANSAT64G0613 Cannabis sativa HOM05D003363 ORTHO05D003952 8.8e-34 148.3 97 66.0
CANSAT80G1098 Cannabis sativa HOM05D003363 ORTHO05D003952 1.2e-33 147.9 93 67.7
CDE09G1349 Ceratophyllum demersum HOM05D003363 ORTHO05D003952 1.2e-33 147.9 103 63.1
BcaC03g18192 Brassica carinata HOM05D003363 ORTHO05D003952 1.5e-33 147.5 113 55.8
THA.LOC104825306 Tarenaya hassleriana HOM05D003363 ORTHO05D003952 1.5e-33 147.5 95 62.1
ATR0723G044 Amborella trichopoda HOM05D003363 ORTHO05D003952 2.0e-33 147.1 94 66.0
AL8G40360 Arabidopsis lyrata HOM05D003363 ORTHO05D003952 2.0e-33 147.1 124 54.0
PGR083G1927 Punica granatum HOM05D003363 ORTHO05D003952 2.0e-33 147.1 98 69.4
arahy.Tifrunner.gnm1.ann1.AN2TAK Arachis hypogaea HOM05D003363 ORTHO05D003952 2.6e-33 146.7 97 61.9
arahy.Tifrunner.gnm1.ann1.Z8QTTL Arachis hypogaea HOM05D003363 ORTHO05D003952 4.4e-33 146.0 97 61.9
Psat5g174720 Pisum sativum HOM05D003363 ORTHO05D003952 1.3e-32 144.4 97 62.9
AT5G63280 Arabidopsis thaliana HOM05D003363 ORTHO05D003952 1.7e-32 144.1 115 53.9
AL7G49030 Arabidopsis lyrata HOM05D003363 ORTHO05D003952 6.3e-32 142.1 96 58.3
CARHR277130 Cardamine hirsuta HOM05D003363 ORTHO05D003952 1.1e-31 141.4 107 59.8
Thhalv10004713m.g Eutrema salsugineum HOM05D003363 ORTHO05D003952 1.4e-31 141.0 115 54.8
Hund05644 Selenicereus undatus HOM05D003363 ORTHO05D003952 2.4e-31 140.2 103 58.3
Carub.0008s2403 Capsella rubella HOM05D003363 ORTHO05D003952 4.1e-31 139.4 127 52.0
Aa31LG1G18720 Aethionema arabicum HOM05D003363 ORTHO05D003952 1.2e-30 137.9 127 51.2
Aa31LG9G930 Aethionema arabicum HOM05D003363 ORTHO05D003952 1.6e-30 137.5 89 61.8
AT5G40710 Arabidopsis thaliana HOM05D003363 ORTHO05D003952 2.0e-30 137.1 87 62.1
Manes.14G055400 Manihot esculenta HOM05D003363 ORTHO05D003952 2.0e-30 137.1 72 77.8
CARHR213800 Cardamine hirsuta HOM05D003363 ORTHO05D003952 3.5e-30 136.3 87 62.1
QL02p073113 Quercus lobata HOM05D003363 ORTHO05D003952 1.7e-29 134.0 83 69.9
AUR62025731 Chenopodium quinoa HOM05D003363 ORTHO05D003952 3.8e-29 132.9 103 54.4
AUR62001275 Chenopodium quinoa HOM05D003363 ORTHO05D003952 5.0e-29 132.5 103 54.4
Thhalv10027883m.g Eutrema salsugineum HOM05D003363 ORTHO05D003952 5.0e-29 132.5 147 42.2
QL02p073044 Quercus lobata HOM05D003363 ORTHO05D003952 1.9e-28 130.6 83 68.7
Nitab4.5_0003282g0080 Nicotiana tabacum HOM05D003363 ORTHO05D003952 1.2e-27 127.9 70 72.9
Mapoly0016s0064 Marchantia polymorpha HOM05D003363 ORTHO05D003952 1.2e-25 121.3 115 49.6
SMO143G0157 Selaginella moellendorffii HOM05D003363 ORTHO05D003952 9.8e-25 118.2 87 59.8
BcaC03g18190 Brassica carinata HOM05D003363 ORTHO05D003952 2.2e-24 117.1 118 46.6
BolC5t33837H Brassica oleracea HOM05D003363 ORTHO05D003952 4.9e-24 115.9 90 55.6
Atru.chr6.2474 Acer truncatum HOM05D003363 ORTHO05D003952 1.4e-23 114.4 67 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2626 Anthoceros agrestis HOM05D003363 ORTHO05D003952 4.1e-23 112.8 85 56.5
Pp3c23_14910 Physcomitrium patens HOM05D003363 ORTHO05D003952 9.2e-23 111.7 124 44.4
Manes.15G155700 Manihot esculenta HOM05D003363 ORTHO05D003952 2.7e-22 110.2 68 66.2
Actinidia16193 Actinidia chinensis HOM05D003363 ORTHO05D003952 1.0e-21 108.2 99 52.5
Pp3c20_14750 Physcomitrium patens HOM05D003363 ORTHO05D003952 1.3e-21 107.8 93 50.5
DCAR_007468 Daucus carota HOM05D003363 ORTHO05D003952 1.1e-20 104.8 53 77.4
CBR_g52069 Chara braunii HOM05D003363 ORTHO05D003952 1.3e-13 81.3 82 48.8
Dinv38473 Davidia involucrata HOM05D003363 ORTHO05D003952 3.0e-13 80.1 99 43.4
BcaC03g18189 Brassica carinata HOM05D003363 ORTHO05D003952 5.6e-12 75.9 65 52.3
vmacro23153 Vaccinium macrocarpon HOM05D003363 ORTHO05D427095 9.5e-12 75.1 61 50.8
PRCOL_00003415 Prasinoderma coloniale HOM05D003363 ORTHO05D003952 2.0e-09 67.4 85 40.0
C05p51520 Brassica napus HOM05D003363 ORTHO05D003952 4.4e-09 66.2 45 57.8
MCO05G523 Micromonas commoda HOM05D003363 ORTHO05D003952 4.1e-07 59.7 79 32.9
BolC3t14658H Brassica oleracea HOM05D003363 ORTHO05D003952 4.6e-06 56.2 40 57.5


User provided reference genes

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