Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.4e-198 695.3 345 100.0
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.8e-145 519.6 326 80.4
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 3.0e-84 316.2 324 51.5
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.2e-80 304.3 328 50.9
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 5.0e-79 298.9 329 50.5
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 7.3e-78 295.0 325 48.0
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 7.3e-78 295.0 328 47.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 2.8e-77 293.1 327 48.3
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 4.7e-77 292.4 331 50.8
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 3.0e-76 289.7 329 48.9
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 3.4e-75 286.2 324 47.8
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 9.8e-75 284.6 325 46.5
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 2.2e-74 283.5 337 48.1
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.4e-73 280.8 325 46.8
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 4.1e-73 279.3 339 46.0
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.7e-72 276.6 334 45.5
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 4.6e-72 275.8 334 46.7
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 4.6e-72 275.8 326 46.6
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 2.3e-71 273.5 328 46.6
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.0e-71 273.1 336 46.1
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.1e-70 271.2 328 44.5
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.5e-70 270.8 334 44.0
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 1.2e-69 267.7 326 46.6
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.6e-69 267.3 326 45.1
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.8e-69 266.5 335 46.6
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 4.7e-69 265.8 318 45.3
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 4.7e-69 265.8 338 44.1
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 6.2e-69 265.4 318 45.3
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.1e-68 264.6 359 42.9
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.8e-68 263.8 318 45.9
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.1e-68 263.1 330 46.7
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.0e-68 262.7 336 42.6
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 6.8e-68 261.9 336 42.9
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 6.8e-68 261.9 334 44.9
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.9e-68 261.5 328 46.0
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 8.9e-68 261.5 336 42.6
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.0e-67 260.4 331 45.6
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 2.0e-67 260.4 327 48.0
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.0e-67 260.4 330 44.8
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 2.0e-67 260.4 326 43.9
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 2.6e-67 260.0 326 45.7
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 2.6e-67 260.0 325 43.7
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.6e-67 260.0 336 44.3
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 5.8e-67 258.8 287 48.4
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 5.8e-67 258.8 331 44.7
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.9e-66 256.5 338 44.4
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.9e-66 256.5 326 44.5
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.9e-66 255.8 336 44.0
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 6.4e-66 255.4 347 44.7
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 8.3e-66 255.0 328 43.0
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 8.3e-66 255.0 327 43.4
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 8.3e-66 255.0 328 42.4
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 1.1e-65 254.6 328 44.5
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.9e-65 253.8 331 44.4
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.4e-65 253.4 327 42.8
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 5.4e-65 252.3 328 43.0
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 7.0e-65 251.9 329 45.3
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.2e-64 251.1 334 43.7
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.6e-64 250.8 325 41.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.0e-64 250.4 327 40.4
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 2.0e-64 250.4 325 41.8
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 3.5e-64 249.6 325 41.8
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.0e-63 248.1 335 43.9
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 2.3e-63 246.9 331 44.7
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 5.0e-63 245.7 339 42.8
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.1e-62 244.6 327 42.5
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.5e-62 244.2 327 41.9
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 2.5e-62 243.4 327 39.8
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.5e-62 243.4 327 39.8
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.5e-62 243.4 334 43.4
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 7.3e-62 241.9 336 42.0
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.6e-61 239.6 329 42.9
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.1e-60 238.0 324 39.8
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.4e-60 237.7 330 43.9
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 5.2e-60 235.7 333 41.4
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 5.2e-60 235.7 325 40.3
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 6.8e-60 235.3 326 40.8
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 8.9e-60 235.0 329 41.6
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.2e-59 234.6 351 39.3
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.5e-59 234.2 324 42.6
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.0e-59 233.8 327 40.4
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.0e-59 233.8 336 41.1
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 4.4e-59 232.6 328 41.2
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 9.9e-59 231.5 335 40.9
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.3e-58 231.1 326 41.4
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 2.2e-58 230.3 326 39.0
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 2.9e-58 229.9 332 40.1
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 3.7e-58 229.6 293 41.6
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 3.7e-58 229.6 326 41.1
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.7e-58 229.6 342 41.2
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 4.9e-58 229.2 347 40.3
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 8.3e-58 228.4 308 42.9
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.1e-57 228.0 334 41.0
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.9e-57 227.3 326 38.3
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.1e-57 225.3 330 40.3
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.1e-57 225.3 330 40.3
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 9.2e-57 224.9 325 40.3
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.2e-56 224.6 323 39.9
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.2e-56 224.6 329 41.0
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 2.1e-56 223.8 345 38.6
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.5e-56 223.0 308 39.9
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 4.6e-56 222.6 318 40.6
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 6.0e-56 222.2 333 38.7
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 6.0e-56 222.2 305 40.7
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 7.8e-56 221.9 293 43.0
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 7.8e-56 221.9 321 39.3
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 5.1e-55 219.2 304 44.4
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.1e-54 218.0 308 39.3
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.5e-54 216.9 331 40.5
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 7.3e-54 215.3 323 39.6
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 9.5e-54 214.9 325 39.7
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.2e-53 214.5 303 43.2
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.2e-53 214.5 332 40.4
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 2.1e-53 213.8 326 39.6
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 2.8e-53 213.4 330 40.9
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 6.2e-53 212.2 331 39.6
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 6.2e-53 212.2 331 39.6
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 6.2e-53 212.2 332 40.4
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 8.9e-52 208.4 339 39.8
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.5e-51 207.6 315 40.6
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 2.7e-48 196.8 303 39.9
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.3e-47 193.7 331 37.2
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.1e-47 192.6 320 38.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.3e-46 189.5 352 34.7
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 4.7e-45 186.0 287 36.6
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.4e-44 184.5 137 59.9
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 3.1e-44 183.3 287 38.7
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 9.9e-43 178.3 278 37.8
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.7e-42 177.6 285 39.6
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.6e-40 171.0 137 56.9
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.7e-40 170.2 195 46.2
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.0e-40 169.1 129 58.1
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.6e-39 165.6 302 37.1
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 6.6e-39 165.6 212 39.6
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.1e-38 164.9 248 41.5
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 2.5e-38 163.7 295 35.6
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.6e-37 161.0 300 36.0
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 6.4e-34 149.1 278 32.0
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.1e-32 144.1 281 32.7
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 6.7e-31 139.0 248 33.5
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.5e-30 137.9 324 32.4
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 1.5e-30 137.9 340 31.8
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.5e-30 137.9 209 33.5
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 9.6e-22 108.6 103 47.6
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 3.4e-19 100.1 280 28.9
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.4e-07 61.6 190 25.3
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.1e-06 58.5 131 31.3


User provided reference genes

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