Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 8.8e-277 956.4 523 100.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 5.2e-245 850.9 525 89.7
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.3e-235 819.7 525 87.6
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 4.3e-223 778.1 534 81.3
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 9.7e-151 537.7 371 82.5
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 5.2e-144 515.4 510 60.6
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 2.7e-140 503.1 531 58.9
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.9e-139 499.6 532 58.8
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 8.6e-139 498.0 501 61.1
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.1e-138 497.7 502 60.0
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.5e-138 496.5 509 60.7
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 7.2e-138 495.0 481 62.0
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 9.5e-138 494.6 534 55.4
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-137 493.8 501 59.7
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.0e-136 491.1 500 60.6
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 6.8e-136 488.4 529 56.7
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.5e-135 487.3 540 57.2
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 2.0e-135 486.9 544 57.9
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.8e-134 483.0 532 56.4
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.8e-134 483.0 539 56.4
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 2.0e-132 476.9 554 54.7
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.3e-131 474.2 536 56.3
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.7e-131 473.8 535 56.6
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.7e-131 473.8 539 56.2
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.7e-131 473.8 531 56.3
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.5e-130 470.7 532 56.0
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 3.3e-130 469.5 541 55.1
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 8.9e-128 461.5 491 57.8
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.2e-127 461.1 529 54.8
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 3.4e-127 459.5 536 56.0
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.4e-127 459.5 530 56.6
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.9e-126 456.4 534 55.1
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.4e-125 453.4 527 54.1
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 9.2e-125 451.4 527 53.9
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.6e-124 450.7 530 55.8
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 2.0e-124 450.3 523 54.5
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 2.7e-124 449.9 511 56.0
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 4.6e-124 449.1 532 54.5
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 3.0e-123 446.4 517 55.1
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.9e-123 446.0 560 53.6
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 6.6e-123 445.3 533 52.3
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.9e-122 443.7 528 55.5
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.3e-122 442.6 501 56.3
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 7.3e-122 441.8 488 57.0
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 9.5e-122 441.4 525 55.0
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 6.2e-121 438.7 518 56.4
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.8e-120 437.2 518 52.3
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 4.0e-120 436.0 619 49.3
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 4.0e-120 436.0 537 52.7
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 4.0e-120 436.0 532 54.7
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 6.8e-120 435.3 528 50.4
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.0e-119 433.7 529 52.9
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.6e-119 433.3 540 51.9
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 2.6e-119 433.3 492 57.5
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 3.4e-119 433.0 533 52.7
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.3e-118 431.0 530 52.3
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 2.9e-118 429.9 548 53.3
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 6.4e-118 428.7 524 52.3
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 6.4e-118 428.7 558 51.3
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.2e-116 424.5 508 51.2
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 2.1e-116 423.7 510 51.8
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.3e-115 421.0 526 51.7
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.7e-115 420.6 494 53.4
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 2.3e-115 420.2 540 51.1
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 2.5e-114 416.8 496 50.8
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.7e-113 412.5 488 51.4
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.4e-111 406.4 523 48.6
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 7.5e-111 405.2 479 54.3
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.3e-110 404.4 534 50.9
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.9e-110 403.3 510 49.4
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.1e-109 401.4 538 50.0
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.9e-109 400.6 515 53.2
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 5.4e-109 399.1 531 51.2
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.2e-108 397.9 493 51.1
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 2.1e-108 397.1 525 48.6
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.5e-108 396.4 506 49.4
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.3e-107 394.4 542 47.6
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 1.2e-105 387.9 529 48.8
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 3.6e-105 386.3 531 49.0
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.1e-104 384.8 528 49.8
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 1.4e-104 384.4 518 50.6
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.4e-104 384.4 529 49.0
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 3.1e-104 383.3 521 46.8
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 4.0e-104 382.9 524 49.4
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 5.2e-104 382.5 509 47.3
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 8.9e-104 381.7 537 48.2
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 1.5e-103 380.9 492 52.0
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 7.6e-103 378.6 536 46.8
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 9.9e-103 378.3 518 46.5
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 9.9e-103 378.3 528 47.9
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 3.8e-102 376.3 530 49.2
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 8.4e-102 375.2 476 47.7
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 3.2e-101 373.2 512 47.3
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 3.2e-101 373.2 523 46.8
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 9.2e-101 371.7 485 46.6
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 2.1e-100 370.5 526 45.4
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.7e-100 370.2 508 48.2
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 3.5e-100 369.8 528 45.3
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 7.8e-100 368.6 491 46.2
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.3e-99 367.9 526 45.4
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 3.0e-99 366.7 540 46.1
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 3.0e-99 366.7 530 45.3
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 5.1e-99 365.9 487 46.2
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 2.5e-98 363.6 513 44.8
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 9.6e-98 361.7 495 46.7
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 9.6e-98 361.7 482 46.9
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.2e-97 361.3 513 44.6
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 1.2e-97 361.3 418 57.9
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 6.2e-97 359.0 547 46.3
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 1.1e-96 358.2 513 44.4
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.4e-96 357.8 508 48.2
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 1.8e-96 357.5 561 48.3
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.5e-95 354.4 555 45.9
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.4e-95 353.2 531 45.6
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 9.9e-95 351.7 379 56.7
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.1e-93 348.2 542 44.6
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 3.2e-93 346.7 553 43.8
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.9e-91 339.7 434 53.9
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 6.6e-91 339.0 524 46.2
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 8.7e-91 338.6 557 47.0
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.1e-88 331.6 540 43.1
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.0e-88 329.7 521 43.6
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 7.6e-87 325.5 527 46.3
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 9.9e-87 325.1 380 50.8
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.6e-84 317.8 513 42.3
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.8e-83 314.3 563 41.9
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 4.8e-81 306.2 372 52.4
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.4e-80 304.7 529 42.0
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.7e-78 297.7 534 40.1
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.1e-76 290.8 503 41.0
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 4.6e-76 289.7 513 42.9
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 2.3e-75 287.3 512 39.8
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 2.6e-71 273.9 600 36.8
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 1.4e-69 268.1 401 47.1
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 3.3e-66 256.9 317 56.5
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.8e-64 251.1 448 38.2
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 3.6e-60 236.9 250 60.4
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 1.0e-59 235.3 280 51.8
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 2.5e-58 230.7 409 38.4
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.6e-55 220.7 229 55.9
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 8.5e-54 215.7 409 37.2
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 9.7e-50 202.2 397 37.5
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.1e-45 188.7 453 34.2
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.2e-45 187.2 411 35.0
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 2.1e-44 184.5 476 34.2
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.3e-43 181.0 408 34.6
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 8.8e-43 179.1 408 34.6
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.5e-42 178.3 463 33.3
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 2.0e-42 177.9 174 57.5
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.7e-41 174.9 331 39.0
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 1.0e-38 165.6 536 32.1
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-35 154.8 270 40.7
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 1.2e-31 142.1 231 44.6
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 7.7e-31 139.4 190 44.2
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 2.2e-30 137.9 165 52.1
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 8.5e-30 136.0 529 29.7
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 2.1e-28 131.3 488 29.7
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.0e-27 129.0 186 45.2
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.0e-26 124.8 186 40.3
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 4.8e-25 120.2 149 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 2.4e-24 117.9 186 40.3
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 3.5e-23 114.0 324 34.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 2.9e-22 110.9 190 48.4
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 1.0e-19 102.4 115 49.6
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 2.4e-16 91.3 70 61.4
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 1.0e-14 85.9 144 37.5
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 7.3e-13 79.7 105 45.7
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.2e-12 79.0 121 38.0
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.4e-11 75.5 58 65.5
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 6.8e-11 73.2 108 41.7
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 2.0e-10 71.6 133 41.4
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 9.8e-10 69.3 50 60.0
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.3e-09 68.9 68 51.5
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.9e-09 67.8 200 39.5
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 4.1e-08 63.9 44 72.7
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 9.2e-08 62.8 114 36.8
AagrBONN_evm.TU.Sc2ySwM_117.2262 Anthoceros agrestis HOM05D003929 ORTHO05D004499 2.3e-06 58.2 48 54.2


User provided reference genes

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