Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 2.1e-203 712.2 386 100.0
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 1.2e-177 626.7 389 85.9
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 7.9e-166 587.4 451 76.1
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 3.2e-151 538.9 386 79.3
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 5.6e-95 352.1 370 57.3
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 1.1e-90 337.8 300 67.3
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 2.7e-89 333.2 370 55.7
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 4.6e-89 332.4 378 55.3
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 2.6e-84 316.6 366 55.2
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.7e-83 313.9 370 55.7
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 4.9e-83 312.4 373 53.6
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 6.4e-83 312.0 379 54.9
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 1.1e-82 311.2 366 54.4
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 1.4e-82 310.8 380 51.8
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.4e-82 310.8 377 54.1
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 5.4e-82 308.9 376 55.6
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 9.3e-82 308.1 369 53.9
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 1.6e-81 307.4 373 51.7
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 1.6e-81 307.4 371 52.0
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 3.0e-80 303.1 375 53.9
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 1.1e-79 301.2 385 50.6
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 1.5e-79 300.8 365 54.5
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.9e-79 300.4 375 52.5
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.3e-78 297.7 368 51.1
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 8.1e-78 295.0 372 49.7
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.4e-77 294.3 398 50.0
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 4.0e-77 292.7 372 50.3
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 5.3e-77 292.4 371 52.0
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 2.0e-76 290.4 368 51.4
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 4.5e-76 289.3 371 50.9
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 7.6e-76 288.5 382 51.0
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.9e-75 286.6 368 54.1
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 4.2e-74 282.7 377 49.1
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 7.1e-74 282.0 391 48.6
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 2.1e-73 280.4 367 51.0
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 2.7e-73 280.0 380 50.0
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 3.5e-73 279.6 378 50.3
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 1.3e-72 277.7 366 49.5
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 2.3e-72 276.9 369 50.7
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 8.7e-72 275.0 373 54.4
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 1.5e-71 274.2 372 50.8
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 2.5e-71 273.5 408 48.0
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 9.6e-71 271.6 379 48.0
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 1.6e-70 270.8 380 50.8
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 5.3e-69 265.8 381 50.4
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.5e-68 264.2 405 45.4
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 3.4e-68 263.1 462 44.4
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 5.8e-68 262.3 378 50.0
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 4.9e-67 259.2 377 51.5
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 4.6e-65 252.7 365 46.8
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 3.9e-64 249.6 367 49.3
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 7.4e-63 245.4 357 48.7
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.4e-61 241.1 358 49.7
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.8e-61 240.7 361 47.9
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 4.0e-61 239.6 369 45.5
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 2.0e-60 237.3 378 44.2
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 2.9e-59 233.4 385 46.8
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 4.9e-59 232.6 360 45.3
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 8.4e-59 231.9 375 43.2
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 1.1e-58 231.5 306 52.6
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 3.5e-57 226.5 310 49.4
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 7.9e-57 225.3 429 42.4
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 3.9e-56 223.0 292 49.0
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 1.5e-55 221.1 372 44.1
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 1.4e-53 214.5 358 47.2
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 2.4e-53 213.8 364 46.7
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 3.1e-53 213.4 313 46.0
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 4.1e-53 213.0 393 43.0
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 6.9e-53 212.2 373 44.2
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 2.6e-52 210.3 376 44.7
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 7.7e-52 208.8 387 39.8
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 8.5e-51 205.3 386 44.8
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 3.2e-50 203.4 372 46.2
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 3.9e-48 196.4 386 43.0
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 1.9e-47 194.1 378 42.9
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 1.9e-47 194.1 371 43.9
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 1.9e-47 194.1 389 41.9
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 7.4e-47 192.2 380 42.1
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 7.4e-47 192.2 380 41.8
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.3e-46 191.4 374 42.5
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 2.2e-46 190.7 373 42.1
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 1.5e-44 184.5 402 38.8
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 1.3e-43 181.4 406 38.2
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.9e-42 177.6 363 38.0
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 4.2e-42 176.4 375 40.5
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 4.2e-42 176.4 372 40.1
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 6.1e-41 172.6 352 37.8
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 6.7e-40 169.1 375 37.6
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 2.4e-37 160.6 309 42.1
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 3.1e-37 160.2 371 36.9
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 9.1e-37 158.7 313 40.6
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 1.4e-34 151.4 398 37.2
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 7.2e-34 149.1 364 36.8
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.2e-33 148.3 364 36.8
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 2.3e-32 144.1 376 34.0
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 2.8e-30 137.1 163 55.2
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 6.3e-30 136.0 303 39.3
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 1.2e-28 131.7 345 37.4
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 1.2e-28 131.7 375 36.5
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 8.5e-27 125.6 313 32.3
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 5.5e-26 122.9 371 35.0
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 9.4e-26 122.1 365 31.5
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 8.0e-25 119.0 366 34.7
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.6e-23 114.0 245 40.4
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 2.7e-17 94.0 145 44.8
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.8e-14 84.0 58 72.4
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.8e-14 84.0 52 75.0
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.7e-14 83.6 58 72.4
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 8.3e-14 82.4 49 79.6
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.3e-14 82.4 58 70.7
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 1.8e-13 81.3 56 64.3
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 2.4e-13 80.9 65 69.2
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.1e-13 80.1 52 73.1
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 4.1e-13 80.1 48 79.2
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.4e-13 79.7 58 69.0
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.0e-13 79.3 58 69.0
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.0e-13 79.3 58 69.0
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.5e-12 77.0 58 69.0
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.0e-08 65.5 56 57.1
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 2.3e-08 64.3 228 29.4
SMO361G0449 Selaginella moellendorffii HOM05D063101 ORTHO05D007952 1.5e-07 61.6 227 32.6
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 3.7e-06 57.0 41 63.4


User provided reference genes

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