Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.4e-176 622.9 311 100.0
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 6.0e-156 554.3 311 89.1
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.9e-154 549.3 333 85.0
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.2e-145 520.0 311 82.6
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 8.7e-131 470.7 311 78.5
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 3.8e-118 428.7 311 69.5
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 5.5e-117 424.9 311 68.8
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 7.1e-117 424.5 314 69.4
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.2e-116 423.7 311 68.8
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.6e-116 423.3 312 68.9
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.5e-116 422.2 312 68.6
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 4.6e-116 421.8 311 68.8
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 6.1e-116 421.4 311 68.8
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 6.1e-116 421.4 312 70.2
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 6.1e-116 421.4 312 68.6
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 5.1e-115 418.3 311 69.5
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 6.7e-115 417.9 310 67.7
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 1.5e-114 416.8 311 67.8
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 7.4e-114 414.5 311 69.8
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 1.6e-113 413.3 311 67.5
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 6.3e-113 411.4 311 68.2
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.8e-112 409.8 314 68.2
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.4e-112 409.5 311 67.8
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 3.1e-112 409.1 299 69.6
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 4.1e-112 408.7 314 66.6
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 6.9e-112 407.9 311 65.3
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 9.0e-112 407.5 311 67.8
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 9.0e-112 407.5 311 68.8
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.2e-111 407.1 312 67.0
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 3.4e-111 405.6 311 65.9
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 3.4e-111 405.6 311 65.9
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 4.5e-111 405.2 311 65.9
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 5.9e-111 404.8 311 65.6
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.7e-110 403.3 312 67.0
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.2e-110 402.9 311 65.6
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 5.0e-110 401.7 313 65.8
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 6.5e-110 401.4 311 66.6
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.1e-109 400.6 313 66.5
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.4e-109 400.2 318 67.6
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 1.4e-109 400.2 314 66.2
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.9e-109 399.8 301 70.1
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.9e-109 399.8 317 66.9
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 4.2e-109 398.7 312 66.7
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 7.2e-109 397.9 312 65.7
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 7.2e-109 397.9 311 66.6
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 7.2e-109 397.9 314 65.3
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 9.4e-109 397.5 311 65.9
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.2e-108 397.1 312 65.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.2e-108 397.1 312 65.7
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 2.7e-108 396.0 314 65.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 2.7e-108 396.0 314 66.2
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 3.6e-108 395.6 331 63.4
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 4.6e-108 395.2 315 66.3
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 7.9e-108 394.4 315 66.0
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 2.3e-107 392.9 314 65.9
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 2.3e-107 392.9 312 64.7
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 3.0e-107 392.5 314 65.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 5.1e-107 391.7 312 65.7
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 8.8e-107 391.0 335 61.2
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.1e-106 390.6 262 74.0
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.1e-106 390.6 314 65.0
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 2.5e-106 389.4 312 65.4
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 2.5e-106 389.4 309 64.4
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 2.5e-106 389.4 312 65.4
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 2.5e-106 389.4 312 65.4
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 2.5e-106 389.4 315 63.2
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 5.7e-106 388.3 258 74.8
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 9.7e-106 387.5 315 64.4
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.7e-105 386.7 311 65.6
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.2e-105 386.3 314 65.6
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.8e-105 386.0 312 63.1
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 4.8e-105 385.2 258 74.4
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 4.8e-105 385.2 315 63.2
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 8.2e-105 384.4 288 68.8
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.4e-104 383.6 288 68.4
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 4.1e-104 382.1 262 75.2
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 6.9e-104 381.3 258 73.6
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 9.1e-104 380.9 367 56.9
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.2e-103 380.6 310 64.2
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.5e-103 380.2 324 62.0
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 2.6e-103 379.4 314 62.7
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 5.9e-103 378.3 314 63.4
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.3e-102 377.1 315 62.9
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.7e-102 376.7 314 64.0
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.7e-102 376.7 248 75.0
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 5.0e-102 375.2 261 70.1
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 8.5e-102 374.4 311 63.7
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 1.1e-101 374.0 316 62.7
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.1e-101 374.0 261 70.9
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 1.9e-101 373.2 311 63.0
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 3.2e-101 372.5 262 73.3
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 2.1e-100 369.8 292 65.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.6e-100 369.0 298 65.1
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 3.6e-100 369.0 315 61.3
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 3.9e-99 365.5 251 71.7
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 8.8e-99 364.4 314 61.8
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.1e-98 364.0 264 70.5
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.5e-98 363.6 243 74.5
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 4.4e-98 362.1 240 74.6
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.3e-97 360.5 314 62.1
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 3.1e-96 355.9 309 62.5
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 7.0e-96 354.8 362 55.5
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 2.6e-95 352.8 311 59.2
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.7e-94 350.1 236 73.3
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.1e-93 347.4 302 61.6
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 1.9e-93 346.7 242 71.1
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 5.5e-93 345.1 258 67.8
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 3.6e-92 342.4 237 71.3
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.0e-91 340.9 313 58.8
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.8e-91 340.1 312 60.3
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.0e-90 336.7 312 57.7
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 7.0e-88 328.2 278 61.2
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 1.6e-87 327.0 279 62.7
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.6e-87 326.2 272 63.6
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 3.5e-87 325.9 276 63.0
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.5e-85 319.7 285 57.9
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 4.0e-83 312.4 251 63.7
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.1e-80 304.3 216 71.8
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.4e-80 303.9 241 62.2
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.1e-80 302.8 222 69.4
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 5.3e-80 302.0 243 62.6
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 5.3e-80 302.0 271 61.6
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 3.4e-74 282.7 234 61.1
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 4.9e-65 252.3 245 56.3
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.1e-64 251.1 246 51.2
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.4e-64 250.0 429 39.6
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.0e-62 244.6 302 47.0
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.6e-60 237.3 142 81.0
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.6e-60 237.3 231 52.8
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.7e-57 227.3 142 77.5
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-55 220.7 235 48.9
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-55 220.7 235 48.9
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.8e-55 218.4 133 78.9
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 7.1e-48 195.3 161 59.6
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.5e-47 193.0 247 42.1
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.0e-46 191.4 247 41.7
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.3e-46 190.3 200 50.5
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 5.1e-46 189.1 247 41.7
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 8.1e-44 181.8 167 58.1
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 4.4e-42 176.0 153 61.4
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.4e-40 171.0 112 75.0
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.7e-39 166.8 97 83.5
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.6e-37 159.1 97 81.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 2.6e-34 150.2 109 63.3
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.0e-30 138.3 104 68.3
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.5e-29 133.7 101 70.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 4.9e-25 119.4 92 67.4
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.4e-24 117.1 154 44.8
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 5.4e-24 115.9 158 46.8
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.5e-21 107.8 67 77.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 2.4e-16 90.5 71 62.0
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.5e-07 60.1 212 29.7


User provided reference genes

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