Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.7e-246 855.5 432 100.0
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 4.3e-221 771.2 430 91.4
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.8e-219 765.8 431 91.2
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 5.7e-205 717.6 431 86.3
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 3.6e-175 618.6 376 82.2
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 4.7e-175 618.2 391 79.3
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.7e-172 609.8 430 72.6
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 2.2e-172 609.4 445 72.1
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 3.7e-172 608.6 389 77.9
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.4e-171 605.9 404 76.5
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.6e-170 603.2 377 79.0
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 2.0e-170 602.8 430 71.9
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 5.9e-170 601.3 395 75.9
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 7.7e-170 600.9 383 77.8
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.3e-169 600.1 418 73.4
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.9e-169 599.0 398 75.6
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.9e-169 599.0 398 76.1
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 8.6e-169 597.4 395 75.9
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.9e-168 596.3 430 72.8
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 1.9e-168 596.3 412 74.0
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.5e-168 595.9 383 77.5
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.5e-168 595.9 383 77.5
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 2.5e-168 595.9 392 74.7
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.5e-168 594.7 398 75.1
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.1e-167 592.8 389 77.1
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 2.1e-167 592.8 430 70.9
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 6.1e-167 591.3 436 69.3
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 8.0e-167 590.9 376 78.2
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 8.0e-167 590.9 383 76.5
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 8.0e-167 590.9 387 76.2
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 1.0e-166 590.5 392 74.2
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 1.4e-166 590.1 394 73.6
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 2.3e-166 589.3 391 74.2
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 3.0e-166 589.0 376 76.3
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 3.0e-166 589.0 396 75.5
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.0e-166 589.0 387 75.7
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 4.0e-166 588.6 389 74.0
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 6.8e-166 587.8 394 73.1
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 2.0e-165 586.3 418 70.3
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 4.4e-165 585.1 402 72.6
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 5.7e-165 584.7 388 73.7
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 9.8e-165 583.9 389 75.1
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 1.3e-164 583.6 380 77.9
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 2.2e-164 582.8 417 71.5
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.8e-164 582.4 409 73.3
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 2.8e-164 582.4 378 75.7
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.1e-163 580.5 388 74.0
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.4e-163 580.1 425 70.4
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 3.1e-163 578.9 388 74.5
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 5.4e-163 578.2 376 75.8
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 5.4e-163 578.2 395 72.4
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 5.4e-163 578.2 409 72.4
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 7.0e-163 577.8 434 67.3
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.9e-162 574.7 377 75.6
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 6.6e-161 571.2 379 74.9
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 6.6e-161 571.2 404 71.5
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 6.6e-161 571.2 415 70.1
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 3.3e-160 568.9 393 72.8
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 3.6e-159 565.5 396 73.5
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.2e-157 560.5 388 72.4
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 3.2e-155 552.4 375 73.1
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 4.1e-155 552.0 383 72.1
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.6e-154 550.1 380 72.9
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 2.3e-153 546.2 397 71.5
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 1.1e-152 543.9 374 70.6
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.5e-152 543.5 373 72.9
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.3e-152 542.3 374 74.1
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 4.3e-152 542.0 369 72.1
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 7.3e-152 541.2 386 68.4
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 7.3e-152 541.2 372 71.0
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 9.5e-152 540.8 369 71.5
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 9.5e-152 540.8 369 71.5
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 9.5e-152 540.8 408 69.6
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.1e-150 537.3 376 68.6
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.4e-150 537.0 376 69.1
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 4.0e-150 535.4 374 72.7
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 4.4e-149 531.9 373 70.5
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 5.8e-149 531.6 373 68.6
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 9.8e-149 530.8 370 72.4
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 2.2e-148 529.6 430 64.9
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.4e-147 526.2 373 67.8
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 3.2e-147 525.8 369 71.5
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 4.1e-147 525.4 374 68.2
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 2.1e-146 523.1 375 68.8
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 5.1e-145 518.5 379 68.1
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 7.3e-144 514.6 391 69.6
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 7.3e-144 514.6 391 69.6
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 2.6e-141 506.1 350 70.3
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.4e-139 500.4 391 65.7
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 2.1e-138 496.5 351 70.7
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 1.9e-136 490.0 388 62.4
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 9.5e-136 487.6 435 57.9
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 1.4e-134 483.8 373 62.5
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 8.9e-134 481.1 397 61.0
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 9.9e-133 477.6 396 60.4
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 4.9e-132 475.3 383 62.7
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 2.4e-131 473.0 330 70.6
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 3.2e-131 472.6 378 63.2
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.4e-131 471.9 396 60.1
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.0e-129 467.6 303 75.2
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.7e-124 450.3 375 60.3
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 6.4e-124 448.4 413 57.1
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 2.7e-122 443.0 376 58.2
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.3e-121 440.7 354 64.1
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.7e-121 440.3 389 57.6
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 5.6e-120 435.3 363 60.3
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.9e-118 428.3 306 69.3
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 3.4e-117 426.0 418 55.7
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.3e-116 424.1 352 62.8
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 2.1e-114 416.8 367 56.1
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 2.5e-112 409.8 375 58.1
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 6.9e-110 401.7 264 73.9
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 2.2e-108 396.7 358 55.6
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 6.5e-108 395.2 259 73.4
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-106 389.8 354 57.6
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 5.1e-105 385.6 340 57.6
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.3e-102 375.6 368 55.4
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.2e-93 347.8 350 53.1
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 2.9e-92 343.2 228 69.7
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 4.8e-87 325.9 225 70.2
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.4e-83 314.3 316 56.3
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 9.4e-75 285.0 202 73.8
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 7.2e-59 232.3 330 41.2
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.0e-57 228.4 179 68.2
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 5.7e-56 222.6 183 59.0
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 5.2e-49 199.5 224 52.2
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 5.9e-45 186.0 173 54.9
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.5e-43 180.6 178 52.8
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.2e-42 178.3 109 78.0
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 3.1e-41 173.7 118 72.9
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 4.4e-40 169.9 123 70.7
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 1.7e-39 167.9 117 74.4
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 2.9e-39 167.2 117 73.5
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 6.4e-39 166.0 117 70.1
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 7.0e-38 162.5 109 72.5
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 3.5e-37 160.2 159 56.0
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 2.3e-36 157.5 116 68.1
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 2.3e-36 157.5 152 55.9
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 1.5e-35 154.8 112 67.9
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 4.3e-35 153.3 135 63.7
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 4.3e-27 126.7 104 63.5
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 3.1e-25 120.6 91 65.9
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 4.0e-25 120.2 329 26.7
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 3.2e-22 110.5 91 62.6
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.7e-20 104.8 333 24.6
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 6.6e-20 102.8 74 68.9
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 8.6e-20 102.4 73 74.0
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 8.6e-20 102.4 79 65.8
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.2e-18 98.6 63 77.8
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 4.7e-18 96.7 75 60.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 4.7e-18 96.7 75 60.0
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 4.0e-17 93.6 115 49.6
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 5.2e-17 93.2 118 43.2
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 1.2e-16 92.0 73 60.3
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 2.6e-16 90.9 60 73.3
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 3.4e-16 90.5 141 40.4
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 5.8e-16 89.7 53 83.0
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 6.4e-15 86.3 66 66.7
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.2e-13 82.0 62 61.3
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 1.2e-13 82.0 62 61.3
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.2e-13 82.0 62 61.3
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.2e-13 82.0 62 61.3
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 7.8e-13 79.3 62 61.3
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 3.9e-12 77.0 50 74.0
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 3.9e-12 77.0 58 63.8
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 1.3e-10 72.0 71 50.7
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 1.4e-09 68.6 58 55.2
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 2.4e-09 67.8 354 26.6
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 5.3e-09 66.6 75 46.7
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 2.2e-07 61.2 373 24.4
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 3.8e-07 60.5 390 24.9
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 4.9e-07 60.1 269 27.1
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 6.4e-07 59.7 389 24.2
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 1.9e-06 58.2 257 24.9
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 5.4e-06 56.6 366 24.9
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 9.3e-06 55.8 371 22.9


User provided reference genes

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