Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 2.3e-134 482.3 252 100.0
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 2.2e-108 396.0 272 80.1
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 1.1e-91 340.5 246 75.2
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 3.6e-74 282.3 263 61.2
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 1.4e-73 280.4 280 57.5
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 2.0e-72 276.6 264 57.6
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 5.7e-72 275.0 242 61.6
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.3e-71 273.9 269 58.4
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 1.7e-71 273.5 277 55.6
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 2.8e-71 272.7 260 60.4
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 2.8e-71 272.7 278 58.6
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 1.1e-70 270.8 253 60.5
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.8e-70 270.0 230 63.5
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.8e-70 270.0 231 60.6
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 2.4e-70 269.6 221 63.8
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 4.1e-70 268.9 228 61.0
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 5.3e-70 268.5 210 67.1
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 6.9e-70 268.1 215 65.6
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 9.1e-70 267.7 209 65.6
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.2e-69 267.3 230 62.6
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 1.5e-69 266.9 237 62.9
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 1.5e-69 266.9 255 60.0
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 2.6e-69 266.2 264 56.4
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 3.4e-69 265.8 267 58.4
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 4.5e-69 265.4 218 64.7
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 4.5e-69 265.4 242 58.3
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 5.9e-69 265.0 263 58.9
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 5.9e-69 265.0 217 65.9
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 7.7e-69 264.6 263 58.9
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.0e-68 264.2 249 59.8
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.0e-68 264.2 249 59.8
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.7e-68 263.5 206 65.5
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 1.7e-68 263.5 211 66.4
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 1.7e-68 263.5 211 64.0
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 1.7e-68 263.5 245 58.4
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 3.8e-68 262.3 230 61.7
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 3.8e-68 262.3 258 59.7
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 5.0e-68 261.9 248 60.1
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 5.0e-68 261.9 222 62.6
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 1.1e-67 260.8 229 59.8
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 1.1e-67 260.8 218 61.0
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 1.4e-67 260.4 211 64.5
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 1.9e-67 260.0 250 58.0
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 2.5e-67 259.6 204 66.2
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 5.5e-67 258.5 250 55.6
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.6e-66 256.9 216 62.0
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.6e-66 256.9 268 57.1
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 1.6e-66 256.9 226 60.2
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 1.6e-66 256.9 195 67.2
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 1.6e-66 256.9 267 58.1
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 2.1e-66 256.5 202 65.3
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 2.1e-66 256.5 242 58.7
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 2.7e-66 256.1 271 55.4
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 3.6e-66 255.8 183 70.5
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 1.8e-65 253.4 178 72.5
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 1.8e-65 253.4 264 53.0
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 2.3e-65 253.1 265 54.0
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 2.3e-65 253.1 209 63.6
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 2.3e-65 253.1 206 64.1
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 3.9e-65 252.3 183 68.9
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 3.9e-65 252.3 159 78.0
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 5.1e-65 251.9 235 60.4
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 8.8e-65 251.1 173 73.4
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 8.8e-65 251.1 211 62.1
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.1e-64 250.8 261 55.2
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 1.5e-64 250.4 219 62.6
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 1.5e-64 250.4 183 69.4
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 1.5e-64 250.4 183 69.4
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.5e-64 250.4 228 57.9
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 1.5e-64 250.4 188 68.1
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.5e-64 250.4 265 54.7
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.5e-64 250.4 176 70.5
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 2.0e-64 250.0 276 54.7
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.6e-64 249.6 263 55.5
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 4.4e-64 248.8 175 71.4
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 1.3e-63 247.3 183 68.3
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 1.7e-63 246.9 183 67.2
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 4.8e-63 245.4 224 56.7
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 3.1e-62 242.7 215 57.7
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 2.6e-61 239.6 213 57.7
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 3.5e-61 239.2 253 55.3
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 3.5e-61 239.2 172 70.3
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 3.5e-61 239.2 241 54.8
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 1.3e-60 237.3 198 64.1
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 1.3e-60 237.3 200 60.5
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 2.2e-60 236.5 246 53.3
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 2.5e-59 233.0 176 64.8
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 9.4e-59 231.1 163 69.3
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 2.1e-58 229.9 178 64.6
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 2.1e-58 229.9 198 58.1
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 2.7e-58 229.6 159 71.1
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 6.1e-58 228.4 263 53.6
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 1.8e-57 226.9 177 63.3
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 8.8e-57 224.6 248 53.2
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 2.6e-56 223.0 205 56.1
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 3.3e-56 222.6 254 51.2
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 2.8e-55 219.5 147 72.8
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 5.5e-51 205.3 251 51.8
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 7.2e-51 204.9 185 56.2
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 2.6e-48 196.4 198 53.0
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 2.7e-45 186.4 210 49.0
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 8.5e-44 181.4 183 54.6
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 1.9e-43 180.3 186 49.5
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 2.8e-39 166.4 123 65.0
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 5.4e-38 162.2 194 45.9
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 3.3e-35 152.9 186 43.0
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 4.2e-35 152.5 179 46.9
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 6.3e-31 138.7 155 54.8
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 5.4e-30 135.6 117 64.1
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.7e-23 114.0 75 69.3
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 3.7e-23 112.8 158 50.6
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 3.2e-22 109.8 163 47.9
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 6.8e-17 92.0 94 58.5
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 4.4e-16 89.4 134 47.8
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 9.8e-16 88.2 94 56.4
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 2.2e-15 87.0 135 47.4
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 2.9e-15 86.7 194 37.6
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 1.0e-12 78.2 172 32.0
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.7e-12 77.4 170 30.6
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.1e-09 68.2 74 52.7
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 1.8e-09 67.4 77 57.1
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.8e-09 67.4 69 53.6
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 1.3e-07 61.2 136 41.2
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 2.9e-07 60.1 75 53.3
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 1.9e-06 57.4 45 60.0
VMungo0647G1967 Vigna mungo HOM05D006376 ORTHO05D008046 7.1e-06 55.5 55 65.5


User provided reference genes

Program Settings