Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 8.4e-241 837.0 564 100.0
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 5.0e-169 598.6 609 74.1
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 8.1e-127 458.4 610 56.1
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 1.0e-97 361.7 371 65.0
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 2.2e-68 264.2 549 49.5
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 7.5e-56 222.6 615 32.2
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 9.8e-56 222.2 613 33.3
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 9.1e-54 215.7 620 36.9
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 2.3e-52 211.1 620 35.0
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 5.5e-51 206.5 634 32.0
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 1.6e-50 204.9 631 31.7
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.0e-49 202.2 610 36.9
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.3e-49 201.1 533 33.4
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.0e-49 200.7 627 36.7
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 7.5e-48 196.1 627 35.1
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 8.3e-47 192.6 576 31.2
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 1.1e-46 192.2 632 35.0
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.2e-45 188.7 627 36.0
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.6e-45 188.3 627 36.0
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 7.8e-45 186.0 493 33.3
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 1.0e-44 185.7 506 32.2
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 2.9e-44 184.1 580 35.5
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 5.0e-44 183.3 620 38.9
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 3.3e-43 180.6 582 30.1
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.3e-41 174.5 360 39.4
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 2.3e-41 174.5 578 35.3
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 6.8e-41 172.9 614 30.3
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 7.5e-40 169.5 624 30.3
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 3.2e-38 164.1 568 30.6
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 4.1e-38 163.7 617 29.7
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 7.0e-38 162.9 616 29.1
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 2.0e-37 161.4 658 28.0
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 6.0e-37 159.8 373 37.3
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 5.0e-36 156.8 568 30.1
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 7.3e-35 152.9 679 27.2
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 7.3e-35 152.9 483 44.1
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 2.8e-34 151.0 538 33.3
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 6.2e-34 149.8 616 28.2
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 8.0e-34 149.4 623 28.4
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 2.3e-33 147.9 617 29.5
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.2e-33 146.7 617 29.3
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 5.2e-33 146.7 659 28.5
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 1.2e-32 145.6 602 28.2
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 2.0e-32 144.8 609 30.0
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 5.8e-32 143.3 379 31.7
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 1.3e-31 142.1 657 28.6
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 4.9e-31 140.2 334 34.1
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 4.9e-31 140.2 331 39.3
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 1.1e-30 139.0 649 33.0
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.1e-30 139.0 615 28.6
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 2.4e-30 137.9 526 38.2
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 5.4e-30 136.7 588 28.7
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 9.2e-30 136.0 600 29.0
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 1.2e-29 135.6 595 28.1
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.6e-29 135.2 574 31.9
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 1.6e-29 135.2 345 33.0
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 2.7e-29 134.4 327 33.0
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 7.8e-29 132.9 357 32.8
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.0e-28 132.5 182 40.1
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 1.7e-28 131.7 615 28.3
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 3.0e-28 131.0 507 30.4
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 5.1e-28 130.2 602 32.7
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 5.1e-28 130.2 607 28.5
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 6.6e-28 129.8 309 33.0
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 8.6e-28 129.4 613 34.1
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.1e-27 129.0 227 44.1
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 1.1e-27 129.0 607 28.5
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 1.5e-27 128.6 333 34.8
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 3.3e-27 127.5 565 34.0
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 5.6e-27 126.7 332 34.3
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 5.6e-27 126.7 332 34.3
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 7.3e-27 126.3 334 35.0
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 7.3e-27 126.3 334 35.0
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.3e-27 126.3 529 32.3
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 9.5e-27 125.9 371 32.3
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 1.2e-26 125.6 336 33.0
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 2.1e-26 124.8 665 27.4
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 2.8e-26 124.4 495 30.1
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 4.7e-26 123.6 367 32.7
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 8.1e-26 122.9 227 43.2
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 1.8e-25 121.7 366 33.1
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 3.1e-25 120.9 201 41.8
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 4.0e-25 120.6 361 33.5
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 4.0e-25 120.6 371 32.1
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 5.2e-25 120.2 335 31.9
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 5.2e-25 120.2 278 33.5
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 8.9e-25 119.4 488 29.1
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 2.6e-24 117.9 620 28.2
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 5.8e-24 116.7 213 35.2
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 7.6e-24 116.3 191 37.7
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 9.9e-24 115.9 312 31.1
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 1.3e-23 115.5 610 26.7
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 2.2e-23 114.8 490 31.4
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 3.7e-23 114.0 215 34.4
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 4.9e-23 113.6 529 33.1
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 4.9e-23 113.6 215 42.8
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 6.4e-23 113.2 258 32.2
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 8.3e-23 112.8 385 30.4
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.4e-22 112.1 478 28.9
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 1.9e-22 111.7 182 36.8
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 2.4e-22 111.3 157 43.9
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 5.4e-22 110.2 356 29.2
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.2e-22 109.4 365 31.8
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 2.7e-21 107.8 187 43.9
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 7.8e-21 106.3 324 31.8
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 3.0e-20 104.4 685 35.8
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 3.0e-20 104.4 577 27.6
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.6e-20 102.8 467 33.6
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.5e-19 101.3 577 26.3
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 4.3e-19 100.5 610 28.9
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 5.6e-19 100.1 227 35.7
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.4e-17 95.5 497 29.8
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 1.4e-17 95.5 225 30.2
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 1.4e-17 95.5 348 33.9
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 1.8e-17 95.1 189 31.7
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 2.4e-17 94.7 349 32.4
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 8.9e-17 92.8 334 30.8
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 1.2e-16 92.4 223 33.2
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 1.2e-16 92.4 138 39.1
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.5e-16 92.0 347 29.7
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 4.4e-16 90.5 78 57.7
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 5.8e-16 90.1 56 71.4
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.3e-15 89.0 574 26.1
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 2.9e-15 87.8 140 37.9
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 2.9e-15 87.8 134 38.8
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 2.9e-15 87.8 134 38.8
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 2.9e-15 87.8 140 37.9
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 2.9e-15 87.8 246 39.4
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.9e-15 87.8 317 30.0
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.4e-14 84.7 317 30.3
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 3.2e-14 84.3 240 27.1
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 3.2e-14 84.3 125 36.0
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 4.2e-14 84.0 198 29.3
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 9.3e-14 82.8 230 33.5
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 2.1e-13 81.6 173 31.2
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 2.1e-13 81.6 180 29.4
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 4.6e-13 80.5 105 45.7
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.0e-13 80.1 237 26.6
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.3e-12 79.0 161 32.3
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 2.3e-12 78.2 483 42.2
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 2.3e-12 78.2 200 30.0
Thhalv10002930m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.9e-12 77.4 311 28.3
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 3.9e-12 77.4 107 43.9
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 1.5e-11 75.5 123 35.8
COL.COLO4_15223 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.5e-11 75.5 183 36.1
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.5e-11 75.5 159 32.1
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 2.5e-11 74.7 370 27.0
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 4.3e-11 73.9 368 28.0
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 5.6e-11 73.6 173 30.6
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 5.6e-11 73.6 162 32.1
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 9.6e-11 72.8 141 33.3
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 9.6e-11 72.8 141 33.3
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 9.6e-11 72.8 141 33.3
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 9.6e-11 72.8 311 30.2
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 1.3e-10 72.4 226 29.2
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.3e-10 72.4 59 59.3
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 2.1e-10 71.6 102 36.3
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 3.6e-10 70.9 168 38.7
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 8.1e-10 69.7 162 37.0
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 8.1e-10 69.7 117 35.9
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 1.4e-09 68.9 224 32.1
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 3.1e-09 67.8 211 28.0
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.5e-08 65.5 151 31.1
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 5.8e-08 63.5 157 29.3
Thhalv10023543m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.7e-07 62.0 81 42.0
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.7e-07 62.0 148 28.4
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 2.2e-07 61.6 198 31.8
Nitab4.5_0000117g0180 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.9e-07 61.2 97 34.0
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 4.9e-07 60.5 210 31.0
AUR62038407 Chenopodium quinoa HOM05D003229 ORTHO05D003835 8.4e-07 59.7 143 30.1
Nitab4.5_0002595g0030 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.4e-07 59.7 97 33.0
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.4e-06 58.9 285 24.6
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 1.9e-06 58.5 50 54.0
DCAR_020672 Daucus carota HOM05D003229 ORTHO05D003835 2.4e-06 58.2 130 33.1
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 3.2e-06 57.8 107 35.5
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 5.4e-06 57.0 251 27.9
Oeu047795.1 Olea europaea HOM05D003229 ORTHO05D003835 5.4e-06 57.0 74 36.5
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 7.1e-06 56.6 235 28.1
SGA_v2.0_scaffold392G50668 Striga asiatica HOM05D003229 ORTHO05D003835 9.3e-06 56.2 60 41.7


User provided reference genes

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