Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 4.8e-60 234.2 110 100.0
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 8.6e-33 143.7 69 92.8
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 1.9e-32 142.5 69 92.8
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 2.5e-32 142.1 69 89.9
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.5e-32 142.1 69 89.9
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 2.5e-32 142.1 69 89.9
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 3.3e-32 141.7 69 89.9
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 3.3e-32 141.7 69 91.3
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 3.3e-32 141.7 69 91.3
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 7.3e-32 140.6 69 88.4
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 1.2e-31 139.8 69 87.0
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 1.2e-31 139.8 69 87.0
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 1.2e-31 139.8 69 85.5
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.2e-31 139.8 69 89.9
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 2.1e-31 139.0 69 87.0
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 2.1e-31 139.0 69 87.0
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 4.7e-31 137.9 69 85.5
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 4.7e-31 137.9 69 89.9
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 4.7e-31 137.9 104 68.3
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 6.2e-31 137.5 69 87.0
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 6.2e-31 137.5 69 87.0
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 6.2e-31 137.5 69 87.0
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 8.1e-31 137.1 69 85.5
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 8.1e-31 137.1 69 88.4
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 8.1e-31 137.1 69 88.4
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 1.1e-30 136.7 69 84.1
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 1.1e-30 136.7 69 85.5
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 1.4e-30 136.3 69 82.6
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 1.4e-30 136.3 69 88.4
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 1.4e-30 136.3 69 85.5
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 1.4e-30 136.3 69 82.6
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 1.8e-30 136.0 69 84.1
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 1.8e-30 136.0 69 87.0
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 81.2
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 2.3e-30 135.6 69 85.5
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 3.1e-30 135.2 69 85.5
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 4.0e-30 134.8 69 87.0
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 4.0e-30 134.8 69 87.0
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 4.0e-30 134.8 69 85.5
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 4.0e-30 134.8 69 84.1
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 5.2e-30 134.4 69 82.6
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 6.8e-30 134.0 69 87.0
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 6.8e-30 134.0 69 87.0
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 6.8e-30 134.0 69 84.1
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 6.8e-30 134.0 69 84.1
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 8.9e-30 133.7 69 85.5
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 8.9e-30 133.7 69 85.5
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 1.2e-29 133.3 69 85.5
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 1.5e-29 132.9 69 84.1
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 1.5e-29 132.9 69 82.6
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 2.6e-29 132.1 69 84.1
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 4.4e-29 131.3 69 78.3
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 4.4e-29 131.3 69 78.3
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 5.8e-29 131.0 69 81.2
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 5.8e-29 131.0 69 82.6
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 9.9e-29 130.2 69 82.6
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 9.9e-29 130.2 69 81.2
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.2e-28 129.0 69 79.7
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 2.2e-28 129.0 69 81.2
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 3.7e-28 128.3 65 81.5
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 3.7e-28 128.3 65 81.5
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 3.7e-28 128.3 69 79.7
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 4.9e-28 127.9 69 76.8
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 4.9e-28 127.9 69 79.7
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 6.4e-28 127.5 65 80.0
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 1.1e-27 126.7 68 82.4
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.4e-27 126.3 69 79.7
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 3.2e-27 125.2 69 76.8
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.1e-27 124.8 104 59.6
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.4e-27 124.4 104 59.6
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.2e-26 123.2 69 75.4
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 2.7e-26 122.1 69 78.3
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 3.5e-26 121.7 65 81.5
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 4.6e-26 121.3 69 78.3
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 4.6e-26 121.3 69 75.4
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 6.0e-26 120.9 69 75.4
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.3e-25 119.0 88 60.2
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 5.1e-25 117.9 69 76.8
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 6.6e-25 117.5 69 71.0
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 8.6e-25 117.1 68 70.6
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 1.9e-24 115.9 69 75.4
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 2.5e-24 115.5 69 73.9
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 5.6e-24 114.4 59 86.4
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 9.5e-24 113.6 57 86.0
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.1e-23 112.5 63 77.8
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 8.1e-23 110.5 56 83.9
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 8.1e-23 110.5 56 85.7
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 1.1e-22 110.2 112 50.9
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 1.1e-22 110.2 56 85.7
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.4e-22 109.8 56 85.7
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.4e-22 109.8 56 85.7
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 1.4e-22 109.8 68 67.6
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 1.8e-22 109.4 56 85.7
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 2.4e-22 109.0 56 82.1
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 2.4e-22 109.0 56 78.6
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 2.4e-22 109.0 61 75.4
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 3.1e-22 108.6 56 78.6
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 3.1e-22 108.6 56 78.6
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 3.1e-22 108.6 56 78.6
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 3.1e-22 108.6 65 72.3
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 5.2e-22 107.8 56 78.6
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 8.9e-22 107.1 57 78.9
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 1.2e-21 106.7 67 67.2
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 2.0e-21 105.9 56 80.4
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 2.6e-21 105.5 56 80.4
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 2.6e-21 105.5 56 80.4
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 2.9e-20 102.1 56 76.8
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 3.8e-20 101.7 52 80.8
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 6.4e-20 100.9 56 80.4
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 6.4e-20 100.9 56 80.4
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 3.2e-19 98.6 49 85.7
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 3.2e-19 98.6 56 76.8
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.6e-18 96.3 69 62.3
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 3.5e-18 95.1 55 72.7
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 4.6e-18 94.7 52 75.0
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 6.0e-18 94.4 56 73.2
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.3e-17 93.2 56 78.6
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.9e-16 89.4 69 60.9
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 2.5e-16 89.0 56 64.3
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 4.3e-16 88.2 44 84.1
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 4.0e-14 81.6 67 52.2
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.0e-13 79.3 50 66.0
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 2.2e-12 75.9 69 47.8
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 2.9e-12 75.5 39 87.2
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 6.4e-12 74.3 65 50.8
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 9.3e-11 70.5 56 53.6
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 6.0e-10 67.8 60 48.3
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 1.3e-09 66.6 50 62.0
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 8.7e-09 63.9 69 42.0


User provided reference genes

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