Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 4.9e-137 491.1 246 100.0
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 3.7e-116 421.8 249 86.3
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 5.0e-113 411.4 250 85.2
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 4.2e-88 328.6 244 71.7
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.2e-79 300.4 250 69.2
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 1.6e-50 203.8 253 49.0
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 4.6e-50 202.2 257 50.6
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.1e-46 191.0 253 46.2
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 5.2e-46 188.7 255 45.9
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.2e-45 187.6 252 46.4
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 5.8e-45 185.3 250 46.0
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 7.5e-45 184.9 274 46.4
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 1.3e-44 184.1 250 48.0
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.9e-43 180.3 260 46.2
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 3.2e-43 179.5 251 45.8
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 1.2e-42 177.6 256 49.6
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.6e-42 177.2 263 47.9
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 6.0e-42 175.3 262 44.3
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 7.8e-42 174.9 275 46.2
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.0e-41 174.5 271 43.9
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 1.7e-41 173.7 257 43.6
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 2.3e-41 173.3 256 43.8
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.5e-40 170.6 251 43.0
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.9e-40 170.2 252 43.3
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 2.5e-40 169.9 252 46.0
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.3e-40 169.5 257 44.7
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 4.3e-40 169.1 231 48.5
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.6e-39 167.2 257 45.1
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.1e-39 166.8 250 42.8
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.8e-38 163.7 251 42.2
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 2.3e-38 163.3 254 45.3
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.1e-38 162.9 250 42.4
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 5.2e-38 162.2 248 41.1
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 6.8e-38 161.8 252 42.9
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 8.9e-38 161.4 252 42.9
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.2e-37 161.0 250 42.0
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.5e-37 160.6 252 41.3
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.0e-37 160.2 252 42.9
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.4e-37 159.1 255 40.0
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 2.2e-36 156.8 253 41.9
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.9e-36 156.4 250 42.0
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.8e-36 156.0 252 42.9
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 3.8e-36 156.0 254 40.9
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.9e-36 155.6 248 41.5
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 4.9e-36 155.6 255 41.2
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 6.4e-36 155.2 248 41.5
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 3.2e-35 152.9 257 43.2
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 3.2e-35 152.9 254 41.3
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 5.4e-35 152.1 254 39.8
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.2e-34 151.0 248 42.7
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.2e-34 151.0 261 41.4
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.1e-34 150.2 248 41.5
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 2.1e-34 150.2 254 39.4
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 2.7e-34 149.8 256 39.5
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 4.6e-34 149.1 253 41.1
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 7.8e-34 148.3 260 39.2
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.7e-33 147.1 253 40.7
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 1.7e-33 147.1 254 40.2
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.7e-33 147.1 257 39.7
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 5.1e-33 145.6 254 41.7
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 6.6e-33 145.2 253 39.9
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 1.5e-32 144.1 231 45.0
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.3e-32 142.9 257 40.5
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 4.3e-32 142.5 247 39.7
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 9.6e-32 141.4 250 41.2
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.6e-31 140.6 263 36.9
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 6.2e-31 138.7 259 38.6
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 8.1e-31 138.3 254 42.5
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.1e-30 137.9 258 40.3
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 1.1e-30 137.9 252 39.3
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.4e-30 137.5 256 39.1
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.4e-30 136.7 249 38.2
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 3.1e-30 136.3 253 39.9
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 3.1e-30 136.3 247 38.1
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 4.0e-30 136.0 254 40.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 8.9e-30 134.8 209 48.3
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 8.9e-30 134.8 253 39.5
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 8.9e-30 134.8 253 39.5
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.2e-29 134.4 264 40.9
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 1.5e-29 134.0 272 42.3
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 1.5e-29 134.0 246 39.4
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 7.6e-29 131.7 249 39.8
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 1.3e-28 131.0 266 39.8
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.3e-28 131.0 254 39.4
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 6.4e-28 128.6 259 37.8
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 7.1e-27 125.2 242 38.4
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.5e-26 122.9 249 37.8
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 3.5e-26 122.9 254 37.4
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 3.5e-26 122.9 262 36.6
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 4.6e-26 122.5 269 38.3
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.0e-25 121.3 261 39.5
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.7e-25 120.6 268 38.4
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.0e-25 119.8 259 35.5
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 5.1e-25 119.0 249 38.2
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 5.1e-25 119.0 231 38.1
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 3.3e-24 116.3 247 36.0
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 2.8e-23 113.2 253 35.6
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 3.6e-23 112.8 247 35.6
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 6.2e-23 112.1 250 35.2
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 4.0e-22 109.4 252 33.3
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 9.0e-22 108.2 258 33.7
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 2.6e-21 106.7 248 34.3
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 9.9e-21 104.8 246 33.7
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 4.9e-20 102.4 246 33.3
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 4.2e-19 99.4 266 36.8
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 9.3e-19 98.2 259 33.2
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.2e-18 97.8 256 34.0
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 3.5e-18 96.3 252 32.9
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 1.3e-17 94.4 259 33.6
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 3.9e-17 92.8 252 31.7
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 1.1e-16 91.3 251 33.1
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 5.6e-16 89.0 256 31.6
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 1.6e-15 87.4 250 32.0
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 3.6e-15 86.3 249 32.1
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 6.2e-15 85.5 257 32.7
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.1e-14 84.7 269 29.7
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 1.1e-14 84.7 257 31.1
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 1.4e-14 84.3 249 28.9
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 1.4e-14 84.3 249 28.9
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 1.4e-14 84.3 249 28.9
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 6.9e-14 82.0 128 42.2
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 1.2e-13 81.3 266 28.9
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 1.5e-13 80.9 276 27.2
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.5e-13 80.9 103 41.7
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 4.5e-13 79.3 276 27.2
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 2.2e-12 77.0 103 38.8
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 2.2e-12 77.0 103 38.8
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 2.2e-12 77.0 173 30.1
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 2.9e-12 76.6 103 39.8
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 4.9e-12 75.9 245 31.8
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 4.9e-12 75.9 245 31.8
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 8.4e-12 75.1 103 38.8
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 1.1e-11 74.7 259 31.3
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.9e-11 73.9 175 30.3
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.2e-10 71.2 273 26.7
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 2.7e-10 70.1 256 30.5
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 3.5e-10 69.7 103 37.9
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 6.0e-10 68.9 94 39.4
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 6.0e-10 68.9 250 32.0
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 1.0e-09 68.2 252 30.2
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 2.1e-07 60.5 89 36.0
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 2.8e-07 60.1 88 39.8
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 4.0e-06 56.2 248 27.0


User provided reference genes

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