Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 2.3e-88 328.9 177 100.0
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 1.8e-85 319.3 177 96.6
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 5.4e-85 317.8 177 96.0
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 1.5e-79 299.7 178 88.8
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 7.3e-74 280.8 177 81.9
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 1.2e-73 280.0 175 85.7
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 2.1e-73 279.3 177 84.2
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 3.6e-73 278.5 177 84.2
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 4.7e-73 278.1 178 84.3
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 6.1e-73 277.7 177 81.4
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 6.1e-73 277.7 177 81.9
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 6.1e-73 277.7 177 84.7
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 8.0e-73 277.3 177 81.4
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 8.0e-73 277.3 177 83.1
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 8.0e-73 277.3 177 84.2
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 1.0e-72 276.9 177 81.4
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 1.4e-72 276.6 175 80.6
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 1.4e-72 276.6 177 84.2
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.4e-72 276.6 177 84.2
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 1.8e-72 276.2 177 79.1
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 2.3e-72 275.8 173 85.5
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 2.3e-72 275.8 175 84.6
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 3.1e-72 275.4 177 80.2
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 3.1e-72 275.4 177 83.6
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 4.0e-72 275.0 177 79.7
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 4.0e-72 275.0 178 81.5
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 5.2e-72 274.6 170 83.5
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 5.2e-72 274.6 177 80.2
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 8.9e-72 273.9 177 83.1
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 1.5e-71 273.1 177 79.1
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 2.0e-71 272.7 167 86.2
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 2.6e-71 272.3 177 81.9
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 2.6e-71 272.3 179 80.4
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 4.4e-71 271.6 177 83.6
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 5.8e-71 271.2 178 82.6
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 9.8e-71 270.4 177 80.8
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 9.8e-71 270.4 177 80.2
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 1.3e-70 270.0 175 82.3
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 1.3e-70 270.0 175 82.9
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 1.7e-70 269.6 180 80.0
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 2.2e-70 269.2 177 81.9
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 2.2e-70 269.2 176 83.0
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 2.2e-70 269.2 179 81.0
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 2.9e-70 268.9 177 76.8
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 2.9e-70 268.9 177 76.8
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 2.9e-70 268.9 179 78.8
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 4.9e-70 268.1 170 81.8
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 4.9e-70 268.1 155 87.7
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 4.9e-70 268.1 177 81.9
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 1.1e-69 266.9 167 81.4
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 1.1e-69 266.9 167 82.6
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 1.4e-69 266.5 177 76.3
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 1.4e-69 266.5 177 76.3
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 3.2e-69 265.4 184 77.2
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 3.2e-69 265.4 184 77.2
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 3.2e-69 265.4 184 77.2
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 4.1e-69 265.0 177 79.1
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 5.4e-69 264.6 177 74.6
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 5.4e-69 264.6 177 78.5
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 5.4e-69 264.6 177 78.5
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 9.2e-69 263.8 177 74.6
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 1.2e-68 263.5 165 83.0
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 1.6e-68 263.1 177 80.2
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 1.6e-68 263.1 177 80.2
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 2.0e-68 262.7 177 78.0
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 2.7e-68 262.3 177 79.7
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 2.7e-68 262.3 177 78.0
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 2.7e-68 262.3 177 78.0
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 4.6e-68 261.5 177 78.5
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 4.6e-68 261.5 177 78.0
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 4.6e-68 261.5 176 79.0
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 6.0e-68 261.2 179 78.8
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 6.0e-68 261.2 179 78.8
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 7.8e-68 260.8 179 78.2
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 1.0e-67 260.4 177 73.4
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 1.3e-67 260.0 177 73.4
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 1.3e-67 260.0 178 78.1
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.7e-67 259.6 155 84.5
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 2.3e-67 259.2 177 74.6
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 6.6e-67 257.7 179 78.2
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 8.6e-67 257.3 178 77.5
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 1.1e-66 256.9 179 74.9
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 1.1e-66 256.9 178 77.5
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 9.5e-66 253.8 153 83.7
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 9.5e-66 253.8 165 82.4
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 1.2e-65 253.4 173 76.9
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 1.2e-65 253.4 179 76.5
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 3.6e-65 251.9 151 85.4
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 1.8e-64 249.6 177 73.4
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 3.1e-64 248.8 178 74.2
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 3.1e-64 248.8 163 78.5
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 3.1e-64 248.8 151 82.8
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 4.0e-64 248.4 142 88.7
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 2.0e-63 246.1 163 76.1
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 2.6e-63 245.7 176 75.6
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 2.6e-63 245.7 153 83.0
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 4.4e-63 245.0 153 81.7
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 5.8e-63 244.6 176 75.6
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 9.8e-63 243.8 150 84.7
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 1.3e-62 243.4 158 79.1
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 2.9e-62 242.3 155 83.2
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 4.9e-62 241.5 164 78.0
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 8.3e-62 240.7 176 69.3
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 1.1e-61 240.4 167 79.6
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 3.2e-61 238.8 156 82.1
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 6.0e-60 234.6 176 70.5
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 1.0e-59 233.8 176 67.0
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 2.3e-59 232.6 139 83.5
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 3.2e-53 212.2 152 71.7
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 2.7e-52 209.1 118 92.4
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 2.7e-52 209.1 131 80.9
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 1.0e-51 207.2 120 90.8
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 5.1e-51 204.9 164 64.6
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 1.9e-50 203.0 120 86.7
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 4.7e-49 198.4 154 66.2
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 1.8e-48 196.4 153 62.7
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 2.2e-46 189.5 108 90.7
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 8.4e-46 187.6 107 88.8
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 7.1e-45 184.5 131 67.2
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 2.1e-44 183.0 121 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 1.0e-43 180.6 152 58.6
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 1.0e-43 180.6 107 86.0
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 8.7e-43 177.6 129 72.1
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 2.3e-35 152.9 91 84.6
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 1.2e-28 130.6 123 48.0
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 2.8e-17 92.8 106 53.8
MD13G1241300 Malus domestica HOM05D006260 ORTHO05D249159 4.6e-12 75.5 118 48.3


User provided reference genes

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