Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G013640 Citrullus lanatus HOM05D006498 ORTHO05D006377 4.2e-217 758.1 484 100.0
MELO3C017425.2 Cucumis melo HOM05D006498 ORTHO05D006377 2.8e-168 595.9 485 84.1
CsaV3_1G031910 Cucumis sativus L. HOM05D006498 ORTHO05D006377 3.1e-159 565.8 485 82.5
Sed0023189 Sechium edule HOM05D006498 ORTHO05D006377 3.3e-121 439.5 492 66.7
Duzib150G1211 Durio zibethinus HOM05D006498 ORTHO05D006377 4.0e-58 229.9 518 44.6
CSS0012471 Camellia sinensis var. sinensis HOM05D006498 ORTHO05D006377 4.4e-57 226.5 504 41.7
VMungo1215G1417 Vigna mungo HOM05D006498 ORTHO05D006377 1.7e-56 224.6 387 46.8
Lj4g0022386 Lotus japonicus HOM05D006498 ORTHO05D006377 4.9e-56 223.0 352 47.2
FAN17G1293 Fragaria x ananassa HOM05D006498 ORTHO05D006377 8.4e-56 222.2 496 43.8
Nn4g25125 Nelumbo nucifera HOM05D006498 ORTHO05D006377 1.4e-55 221.5 515 41.0
Haze_22031 Corylus avellana HOM05D006498 ORTHO05D006377 9.3e-55 218.8 487 40.0
FAN12G3360 Fragaria x ananassa HOM05D006498 ORTHO05D006377 1.6e-54 218.0 333 53.5
FvH4_4g07150 Fragaria vesca HOM05D006498 ORTHO05D006377 2.1e-54 217.6 393 49.1
CiPaw.07G197600 Carya illinoinensis HOM05D006498 ORTHO05D006377 4.6e-54 216.5 332 48.5
Atru.chr7.955 Acer truncatum HOM05D006498 ORTHO05D006377 5.1e-53 213.0 398 53.3
TWI34G1139 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 8.7e-53 212.2 408 51.5
Lsat_1_v5_gn_9_16541 Lactuca sativa HOM05D006498 ORTHO05D006377 5.6e-52 209.5 521 40.1
Phvul.003G140900 Phaseolus vulgaris HOM05D006498 ORTHO05D006377 1.3e-51 208.4 391 46.5
Ca_21256_v3 Cicer arietinum L. HOM05D006498 ORTHO05D006377 1.6e-51 208.0 424 46.5
Gohir.D13G212600 Gossypium hirsutum HOM05D006498 ORTHO05D006377 1.6e-51 208.0 467 47.1
Gorai.013G243000 Gossypium raimondii HOM05D006498 ORTHO05D006377 1.6e-51 208.0 467 47.1
Potri.006G075000 Populus trichocarpa HOM05D006498 ORTHO05D006377 8.1e-51 205.7 335 57.3
GSVIVG01029313001 Vitis vinifera HOM05D006498 ORTHO05D006377 1.4e-50 204.9 487 44.4
Hma1.2p1_0491F.1_g164630 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 1.8e-50 204.5 322 47.5
Glyma.13G101000 Glycine max HOM05D006498 ORTHO05D006377 3.1e-50 203.8 326 47.9
Cfa013457 Carpinus fangiana HOM05D006498 ORTHO05D006377 3.4e-49 200.3 500 40.6
arahy.Tifrunner.gnm1.ann1.XIUU7W Arachis hypogaea HOM05D006498 ORTHO05D006377 5.8e-49 199.5 397 46.3
Manes.14G159400 Manihot esculenta HOM05D006498 ORTHO05D006377 5.8e-49 199.5 495 45.7
arahy.Tifrunner.gnm1.ann1.YNM2K2 Arachis hypogaea HOM05D006498 ORTHO05D006377 9.9e-49 198.7 402 44.8
Ciclev10008415m.g Citrus clementina HOM05D006498 ORTHO05D006377 2.2e-48 197.6 500 46.4
CAN.G844.1 Capsicum annuum HOM05D006498 ORTHO05D006377 4.9e-48 196.4 403 44.9
Eucgr.C00107 Eucalyptus grandis HOM05D006498 ORTHO05D006377 1.4e-47 194.9 325 49.8
Prupe.1G074500 Prunus persica HOM05D006498 ORTHO05D006377 1.4e-47 194.9 434 45.9
Gohir.A13G208200 Gossypium hirsutum HOM05D006498 ORTHO05D006377 1.9e-47 194.5 354 52.5
Dinv28799 Davidia involucrata HOM05D006498 ORTHO05D006377 2.4e-47 194.1 279 48.7
Sc18g0007220 Simmondsia chinensis HOM05D006498 ORTHO05D006377 3.2e-47 193.7 346 46.2
Sopen09g019810 Solanum pennellii HOM05D006498 ORTHO05D006377 4.2e-47 193.4 318 47.8
Actinidia23350 Actinidia chinensis HOM05D006498 ORTHO05D006377 7.1e-47 192.6 514 39.1
MD13G1239600 Malus domestica HOM05D006498 ORTHO05D006377 9.3e-47 192.2 495 44.6
Psat0s3389g0200 Pisum sativum HOM05D006498 ORTHO05D006377 9.3e-47 192.2 334 45.5
Cc01_g15950 Coffea canephora HOM05D006498 ORTHO05D006377 1.6e-46 191.4 509 40.9
FAN22G0654 Fragaria x ananassa HOM05D006498 ORTHO05D006377 1.6e-46 191.4 444 44.1
Sed0023288 Sechium edule HOM05D006498 ORTHO05D006377 2.1e-46 191.0 476 36.1
Thecc.09G186800 Theobroma cacao HOM05D006498 ORTHO05D006377 2.7e-46 190.7 443 48.3
CANSAT11G0487 Cannabis sativa HOM05D006498 ORTHO05D006377 6.0e-46 189.5 318 49.1
TWI32G0168 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 6.0e-46 189.5 404 42.3
Glyma.17G058700 Glycine max HOM05D006498 ORTHO05D006377 1.0e-45 188.7 316 55.7
Nitab4.5_0000038g0230 Nicotiana tabacum HOM05D006498 ORTHO05D006377 1.8e-45 188.0 500 41.2
THA.LOC104820009 Tarenaya hassleriana HOM05D006498 ORTHO05D006377 1.8e-45 188.0 411 47.4
Medtr4g127350 Medicago truncatula HOM05D006498 ORTHO05D006377 2.3e-45 187.6 393 44.8
Aqoxy7G02850 Aquilegia oxysepala HOM05D006498 ORTHO05D006377 3.0e-45 187.2 492 40.0
HanXRQChr07g0190541 Helianthus annuus HOM05D006498 ORTHO05D006377 3.9e-45 186.8 329 46.5
CDE05G1404 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 6.7e-45 186.0 324 47.2
MSTRG.17962 Avicennia marina HOM05D006498 ORTHO05D006377 8.7e-45 185.7 536 37.7
Peaxi162Scf00235g00219 Petunia axillaris HOM05D006498 ORTHO05D006377 8.7e-45 185.7 321 45.5
PGR142G3062 Punica granatum HOM05D006498 ORTHO05D006377 1.3e-43 181.8 501 38.9
PGR142G3622 Punica granatum HOM05D006498 ORTHO05D006377 1.3e-43 181.8 501 38.9
Nitab4.5_0005686g0030 Nicotiana tabacum HOM05D006498 ORTHO05D006377 3.7e-43 180.3 503 40.2
RcHm_v2.0_Chr4g0399301 Rosa chinensis HOM05D006498 ORTHO05D006377 2.4e-42 177.6 496 42.3
SalBow3G4321 Salvia bowleyana HOM05D006498 ORTHO05D006377 2.4e-42 177.6 405 41.5
Aa31LG8G16310 Aethionema arabicum HOM05D006498 ORTHO05D006377 4.0e-42 176.8 331 45.0
Thhalv10022749m.g Eutrema salsugineum HOM05D006498 ORTHO05D006377 4.0e-42 176.8 399 41.4
SGA_v2.0_scaffold95G28702 Striga asiatica HOM05D006498 ORTHO05D006377 5.3e-42 176.4 510 36.9
Migut.N00676 Erythranthe guttata HOM05D006498 ORTHO05D006377 6.9e-42 176.0 496 39.1
AT2G19270 Arabidopsis thaliana HOM05D006498 ORTHO05D006377 5.8e-41 172.9 419 41.8
Sabra06G0055700 Salix brachista HOM05D006498 ORTHO05D006377 2.2e-40 171.0 563 36.1
Oeu003665.1 Olea europaea HOM05D006498 ORTHO05D006377 2.9e-40 170.6 512 42.2
Lj2A1114T36 Lonicera japonica HOM05D006498 ORTHO05D006377 7.1e-39 166.0 425 38.1
AL3G49020 Arabidopsis lyrata HOM05D006498 ORTHO05D006377 9.3e-39 165.6 418 40.2
Hma1.2p1_0491F.1_g164640 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 2.1e-38 164.5 115 73.0
ECA247G1929 Erigeron canadensis HOM05D000109 ORTHO05D006377 6.0e-38 162.9 361 41.3
unitig_60.g25575 Utricularia gibba HOM05D006498 ORTHO05D006377 6.0e-38 162.9 501 34.9
Lalb_Chr12g0199631 Lupinus albus HOM05D006498 ORTHO05D006377 1.3e-37 161.8 105 74.3
Sp3g32630 Schrenkiella parvula HOM05D006498 ORTHO05D006377 2.3e-37 161.0 383 43.6
BolC7t40702H Brassica oleracea HOM05D006498 ORTHO05D006377 5.1e-37 159.8 417 40.3
ATR0626G368 Amborella trichopoda HOM05D006498 ORTHO05D006377 1.5e-36 158.3 501 39.7
EL10Ac8g19141 Beta vulgaris HOM05D006498 ORTHO05D006377 1.5e-36 158.3 243 44.4
CARHR109730 Cardamine hirsuta HOM05D006498 ORTHO05D006377 5.6e-36 156.4 395 41.5
DCAR_004773 Daucus carota HOM05D006498 ORTHO05D006377 7.4e-36 156.0 316 43.7
Lsat_1_v5_gn_3_41001 Lactuca sativa HOM05D006498 ORTHO05D006377 7.4e-36 156.0 103 73.8
AUR62025173 Chenopodium quinoa HOM05D006498 ORTHO05D006377 1.3e-35 155.2 264 42.4
BcaB03g16716 Brassica carinata HOM05D006498 ORTHO05D006377 2.1e-35 154.5 328 45.1
Os02g0175900 Oryza sativa ssp. japonica HOM05D006498 ORTHO05D006377 2.1e-35 154.5 113 70.8
HPP92_011644 Vanilla planifolia HOM05D006498 ORTHO05D006377 2.1e-35 154.5 508 34.3
BcaC06g36544 Brassica carinata HOM05D006498 ORTHO05D006377 2.8e-35 154.1 417 40.0
C07p03100 Brassica napus HOM05D006498 ORTHO05D006377 2.8e-35 154.1 417 40.0
Carub.0003s3350 Capsella rubella HOM05D006498 ORTHO05D006377 8.2e-35 152.5 395 42.0
Zm00001eb206900 Zea mays HOM05D006498 ORTHO05D006377 8.2e-35 152.5 123 65.0
Rhsim13G0054400 Rhododendron simsii HOM05D006498 ORTHO05D006377 2.4e-34 151.0 369 36.0
Zm00001eb233520 Zea mays HOM05D006498 ORTHO05D006377 5.3e-34 149.8 97 76.3
Lsat_1_v5_gn_7_52821 Lactuca sativa HOM05D006498 ORTHO05D006377 1.5e-33 148.3 103 70.9
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 2.6e-33 147.5 124 62.9
PSO063G6554 Papaver somniferum HOM05D006498 ORTHO05D006377 2.6e-33 147.5 322 42.2
BraA07t27953Z Brassica rapa HOM05D006498 ORTHO05D006377 4.5e-33 146.7 391 40.9
A07p01520 Brassica napus HOM05D006498 ORTHO05D006377 1.3e-32 145.2 394 40.9
MBI16_g05840_MAGBIO Magnolia biondii HOM05D006498 ORTHO05D006377 1.3e-32 145.2 412 46.4
PSO170G2385 Papaver somniferum HOM05D006498 ORTHO05D006377 1.3e-32 145.2 321 42.7
Cpa.g.sc2680.1 Carica papaya HOM05D006498 ORTHO05D006377 4.9e-32 143.3 443 44.7
Lsat_1_v5_gn_9_15580 Lactuca sativa HOM05D006498 ORTHO05D006377 4.9e-32 143.3 100 70.0
Lsat_1_v5_gn_5_22180 Lactuca sativa HOM05D006498 ORTHO05D006377 8.4e-32 142.5 101 70.3
vmacro02834 Vaccinium macrocarpon HOM05D006498 ORTHO05D006377 1.6e-30 138.3 446 35.4
CDE05G1079 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 2.3e-29 134.4 76 86.8
Mapoly0001s0081 Marchantia polymorpha HOM05D006498 ORTHO05D006377 1.6e-27 128.3 116 56.0
Lalb_Chr13g0299941 Lupinus albus HOM05D006498 ORTHO05D006377 3.1e-26 124.0 321 34.0
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05D006498 ORTHO05D006377 4.5e-25 120.2 444 32.9
SMO361G0453 Selaginella moellendorffii HOM05D006498 ORTHO05D006377 1.7e-24 118.2 271 34.3
Pp3c15_6280 Physcomitrium patens HOM05D006498 ORTHO05D006377 9.4e-23 112.5 507 29.4
Solyc09g055870.2 Solanum lycopersicum HOM05D006498 ORTHO05D006377 4.6e-22 110.2 266 41.7
COL.COLO4_06397 Corchorus olitorius HOM05D006498 ORTHO05D006377 6.1e-22 109.8 65 83.1
CBR_g12030 Chara braunii HOM05D006498 ORTHO05D006377 1.5e-20 105.1 102 52.9
Actinidia30000 Actinidia chinensis HOM05D006498 ORTHO05D006377 4.3e-20 103.6 447 33.1
Lsat_1_v5_gn_4_108221 Lactuca sativa HOM05D006498 ORTHO05D006377 5.7e-20 103.2 66 75.8
SHI03076 Sapria himalayana HOM05D006498 ORTHO05D006377 2.0e-17 94.7 51 90.2
QL02p046697 Quercus lobata HOM05D006498 ORTHO05D006377 1.3e-16 92.0 50 86.0
Lalb_Chr13g0299961 Lupinus albus HOM05D006498 ORTHO05D006377 1.1e-15 89.0 51 82.4
Solyc09g055850.3 Solanum lycopersicum HOM05D006498 ORTHO05D006377 2.5e-15 87.8 51 80.4
QL02p046691 Quercus lobata HOM05D006498 ORTHO05D000004 4.2e-15 87.0 268 37.7
Ah.09g231280 Amaranthus hybridus HOM05D006498 ORTHO05D006377 7.2e-15 86.3 364 36.3
SGA_v2.0_scaffold95G28701 Striga asiatica HOM05D006498 ORTHO05D006377 1.4e-10 72.0 53 64.2


User provided reference genes

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