Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 0.0e+00 1826.2 949 100.0
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 0.0e+00 1102.4 904 70.0
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 4.3e-306 1054.7 792 71.0
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 5.8e-303 1044.3 887 67.1
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 1.5e-229 800.4 873 51.7
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 5.0e-222 775.4 883 50.8
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 2.5e-221 773.1 898 49.6
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.6e-220 770.4 759 55.1
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 4.1e-216 755.7 741 54.7
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 4.1e-216 755.7 889 50.4
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 7.0e-216 755.0 880 51.0
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 7.0e-216 755.0 762 54.2
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.7e-212 742.3 883 49.0
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.2e-210 737.6 763 53.6
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 3.7e-209 732.6 884 47.6
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 4.9e-209 732.3 880 49.1
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 5.4e-208 728.8 891 49.2
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 5.4e-208 728.8 749 51.8
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 9.2e-208 728.0 762 52.4
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.1e-206 722.2 885 48.9
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 8.6e-206 721.5 765 51.6
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.9e-205 720.3 762 52.4
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.5e-205 719.9 762 52.1
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 3.3e-205 719.5 762 52.1
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 5.6e-205 718.8 757 53.6
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 9.5e-205 718.0 749 51.3
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 2.8e-204 716.5 762 51.6
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.1e-203 714.5 729 52.8
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 2.4e-203 713.4 776 50.5
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 4.4e-202 709.1 760 50.7
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 7.6e-202 708.4 1033 44.4
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.3e-201 707.6 760 52.4
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 3.8e-201 706.1 747 51.5
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 8.4e-201 704.9 813 48.3
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.1e-200 704.5 760 52.4
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 1.4e-200 704.1 762 51.3
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 2.4e-200 703.4 802 49.9
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 3.5e-199 699.5 698 54.3
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 3.9e-198 696.0 761 49.9
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 2.8e-196 689.9 787 49.3
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.1e-195 688.0 764 51.6
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 3.8e-193 679.5 785 49.4
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 1.9e-192 677.2 885 45.4
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.2e-192 676.0 820 47.2
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 9.3e-192 674.9 763 50.2
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 2.7e-191 673.3 754 49.5
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 6.0e-191 672.2 783 49.3
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 2.3e-190 670.2 785 49.3
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 3.9e-190 669.5 875 46.4
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 4.3e-189 666.0 889 47.4
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 9.6e-189 664.8 760 50.3
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 2.1e-188 663.7 858 46.2
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.8e-188 662.5 748 49.3
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 6.2e-188 662.1 775 49.3
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.5e-186 657.5 773 48.9
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 3.8e-185 652.9 766 48.4
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 2.4e-184 650.2 885 45.2
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 2.4e-184 650.2 751 46.2
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 2.4e-184 650.2 715 50.6
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 5.4e-184 649.0 766 46.6
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 6.0e-183 645.6 751 47.3
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 7.9e-183 645.2 780 47.6
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 7.9e-183 645.2 775 47.1
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 8.7e-182 641.7 755 47.7
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.1e-181 641.3 774 47.3
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 3.3e-181 639.8 784 46.6
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 5.6e-181 639.0 752 47.9
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 7.4e-181 638.6 767 48.2
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 5.3e-179 632.5 727 48.7
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 1.1e-176 624.8 762 47.4
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 1.1e-176 624.8 797 43.0
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 3.2e-176 623.2 735 48.4
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.3e-174 617.8 763 47.3
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.3e-174 617.8 761 46.5
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 7.4e-173 612.1 832 47.7
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 2.1e-172 610.5 672 50.3
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.2e-170 604.7 749 45.7
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.2e-169 600.5 754 44.8
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 9.3e-168 595.1 801 43.7
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.8e-166 590.9 755 43.3
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.2e-162 578.2 758 42.7
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.9e-152 544.3 754 41.0
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 5.5e-152 542.7 436 64.2
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.6e-151 541.2 765 44.2
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.1e-149 535.0 807 41.4
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.8e-148 529.6 825 41.7
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 1.1e-144 518.5 773 39.7
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.4e-144 518.1 779 39.5
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.4e-144 518.1 760 39.2
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 3.9e-142 510.0 715 44.2
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 3.9e-142 510.0 395 63.3
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 7.0e-139 499.2 739 41.3
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 2.5e-136 490.7 733 39.2
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 4.0e-134 483.4 891 36.4
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 2.8e-132 477.2 727 40.9
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 5.9e-130 469.5 763 37.6
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.9e-128 464.5 738 39.2
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 6.1e-127 459.5 301 72.4
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 3.0e-126 457.2 319 69.3
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 5.5e-120 436.4 577 44.9
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 9.2e-115 419.1 676 41.4
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 2.0e-114 417.9 780 34.4
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.4e-109 400.2 273 67.4
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.4e-107 393.3 669 36.3
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 9.2e-99 365.9 538 42.2
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 7.8e-98 362.8 503 42.9
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 7.3e-96 356.3 496 40.7
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 4.7e-95 353.6 323 59.4
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 2.0e-85 321.6 384 42.7
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.4e-85 320.9 576 39.4
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 4.3e-80 303.9 415 41.0
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 3.9e-73 280.8 458 40.4
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 3.9e-73 280.8 389 39.3
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 5.1e-73 280.4 328 46.3
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 5.6e-72 276.9 320 49.7
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 2.8e-71 274.6 661 30.1
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 2.9e-68 264.6 339 40.7
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 5.1e-65 253.8 432 39.6
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 6.2e-63 246.9 154 74.7
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 6.0e-58 230.3 682 26.8
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 3.9e-57 227.6 286 44.4
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.7e-57 226.5 195 59.0
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 1.2e-53 216.1 216 55.1
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 1.7e-52 212.2 136 76.5
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 3.5e-50 204.5 220 50.5
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 7.4e-48 196.8 127 74.0
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 3.1e-46 191.4 128 71.9
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.0e-46 189.9 118 75.4
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 2.6e-45 188.3 329 40.1
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.4e-43 182.6 251 45.8
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 5.5e-43 180.6 241 47.3
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 2.2e-39 168.7 362 35.6
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.9e-37 160.6 194 44.3
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 3.7e-31 141.4 259 37.5
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.3e-30 137.5 120 55.8
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 7.0e-30 137.1 381 33.6
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 3.8e-28 131.3 79 78.5
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 8.5e-28 130.2 132 50.8
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 9.4e-27 126.7 343 33.5
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 8.8e-25 120.2 80 61.2
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 8.8e-25 120.2 134 47.8
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 9.7e-24 116.7 132 53.0
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.3e-23 116.3 81 67.9
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.8e-23 115.2 72 75.0
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.7e-20 105.9 89 62.9
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.9e-20 105.1 126 50.0
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 3.2e-19 101.7 64 71.9
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.1e-18 99.0 95 61.1
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 5.7e-16 90.9 84 52.4
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 2.0e-13 82.4 85 54.1
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 6.8e-09 67.4 50 68.0
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.2e-08 66.6 50 62.0
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 2.4e-06 58.9 104 35.6
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 3.1e-06 58.5 43 65.1


User provided reference genes

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