Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.0e-96 356.7 171 100.0
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 3.4e-68 261.9 174 78.7
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.2e-54 216.9 151 72.8
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 2.8e-46 189.1 184 61.4
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 9.0e-21 104.4 186 39.2
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.2e-19 99.8 196 40.8
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 1.4e-18 97.1 161 39.1
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 7.1e-18 94.7 161 38.5
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.7e-17 92.8 162 39.5
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 7.9e-17 91.3 182 39.6
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 2.3e-16 89.7 212 36.3
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 1.1e-15 87.4 176 35.8
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 2.5e-15 86.3 176 36.4
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.5e-15 86.3 179 35.8
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 3.3e-15 85.9 182 41.2
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 4.3e-15 85.5 178 35.4
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 5.7e-15 85.1 127 44.9
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 9.6e-15 84.3 91 52.7
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 1.3e-14 84.0 181 34.8
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 1.6e-14 83.6 91 51.6
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 1.6e-14 83.6 155 40.0
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 2.1e-14 83.2 123 48.8
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 2.8e-14 82.8 105 47.6
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 4.8e-14 82.0 179 39.1
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 4.8e-14 82.0 172 37.8
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.4e-13 80.5 184 35.3
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 1.8e-13 80.1 187 34.2
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 3.1e-13 79.3 80 56.2
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 5.3e-13 78.6 70 62.9
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 9.0e-13 77.8 166 33.7
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 4.5e-12 75.5 60 70.0
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 4.5e-12 75.5 181 34.8
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 5.8e-12 75.1 69 60.9
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 1.0e-11 74.3 174 36.2
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.3e-11 73.9 90 42.2
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 1.7e-11 73.6 81 50.6
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 2.2e-11 73.2 137 38.7
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 2.9e-11 72.8 81 49.4
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 2.9e-11 72.8 81 50.6
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 2.9e-11 72.8 72 54.2
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 2.9e-11 72.8 81 49.4
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 2.9e-11 72.8 81 49.4
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 3.8e-11 72.4 91 50.5
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 6.5e-11 71.6 118 43.2
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 6.5e-11 71.6 178 37.1
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 8.4e-11 71.2 70 57.1
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 8.4e-11 71.2 173 33.5
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.1e-10 70.9 78 55.1
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 1.1e-10 70.9 73 53.4
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.1e-10 70.9 62 66.1
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.9e-10 70.1 77 51.9
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 1.9e-10 70.1 67 59.7
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 2.5e-10 69.7 71 56.3
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 2.5e-10 69.7 71 56.3
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 3.2e-10 69.3 71 52.1
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 3.2e-10 69.3 169 37.9
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 4.2e-10 68.9 103 46.6
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 4.2e-10 68.9 126 38.9
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 5.5e-10 68.6 137 38.0
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 7.1e-10 68.2 94 42.6
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 7.1e-10 68.2 79 53.2
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 9.3e-10 67.8 142 38.0
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 9.3e-10 67.8 116 40.5
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.6e-09 67.0 65 55.4
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 2.7e-09 66.2 63 60.3
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 3.5e-09 65.9 176 30.7
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 3.5e-09 65.9 68 52.9
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 4.6e-09 65.5 84 46.4
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 4.6e-09 65.5 80 46.2
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 6.1e-09 65.1 119 38.7
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 1.0e-08 64.3 72 50.0
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 1.0e-08 64.3 83 47.0
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 1.3e-08 63.9 84 50.0
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 1.8e-08 63.5 82 51.2
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 3.0e-08 62.8 76 51.3
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 3.0e-08 62.8 76 51.3
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 3.0e-08 62.8 76 51.3
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 3.9e-08 62.4 106 42.5
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 5.1e-08 62.0 125 40.0
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 1.1e-07 60.8 65 53.8
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 1.9e-07 60.1 60 56.7
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 1.9e-07 60.1 91 44.0
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 1.9e-07 60.1 81 48.1
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 4.3e-07 58.9 76 48.7
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 4.3e-07 58.9 70 45.7
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 5.7e-07 58.5 63 57.1
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.6e-06 57.0 92 43.5
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 1.6e-06 57.0 184 29.3
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 2.2e-06 56.6 124 37.1
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 2.2e-06 56.6 124 37.1
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 2.8e-06 56.2 83 43.4
MELO3C017459.2 Cucumis melo HOM05D015664 ORTHO05D008524 4.8e-06 55.5 132 35.6
CsaV3_1G031630 Cucumis sativus L. HOM05D015664 ORTHO05D008524 4.8e-06 55.5 87 43.7
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 6.3e-06 55.1 77 44.2
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 6.3e-06 55.1 79 45.6


User provided reference genes

Program Settings