Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 0.0e+00 1256.9 646 100.0
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 0.0e+00 1231.9 646 97.4
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 0.0e+00 1222.2 646 96.7
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 0.0e+00 1152.5 646 92.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 0.0e+00 1144.4 648 91.8
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 2.8e-285 984.9 654 78.1
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 1.1e-281 973.0 646 77.6
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 1.9e-281 972.2 655 76.5
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.5e-278 962.6 650 76.8
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 4.4e-278 961.1 652 76.2
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.6e-275 952.6 648 75.9
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 3.0e-274 948.3 648 75.2
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.5e-273 946.0 647 76.2
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.9e-273 945.7 650 75.4
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.9e-273 945.7 647 75.7
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 2.5e-273 945.3 660 74.8
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 4.3e-273 944.5 650 75.2
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.3e-273 944.5 649 75.7
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 7.3e-273 943.7 647 76.0
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 8.0e-272 940.3 647 75.3
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 2.3e-271 938.7 630 77.1
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.3e-271 938.7 647 75.3
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.3e-271 938.7 647 75.3
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 5.8e-270 934.1 636 76.7
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 5.8e-270 934.1 648 75.5
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 6.4e-269 930.6 660 74.2
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 8.3e-269 930.2 647 75.9
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 9.2e-268 926.8 648 75.0
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 9.2e-268 926.8 644 75.3
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.2e-267 926.4 645 76.1
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.2e-267 926.4 649 73.3
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 2.1e-267 925.6 648 74.4
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 3.5e-267 924.9 649 74.7
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 4.6e-267 924.5 651 75.6
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 6.0e-267 924.1 654 73.4
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 2.3e-266 922.2 651 73.0
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 2.3e-266 922.2 652 74.1
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 3.0e-266 921.8 647 73.6
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.9e-265 919.1 647 73.3
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.6e-265 917.5 649 73.5
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.2e-264 916.4 633 76.6
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 1.6e-264 916.0 639 75.1
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 1.1e-263 913.3 649 73.2
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.4e-263 912.9 650 73.8
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 1.4e-263 912.9 651 74.2
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 5.2e-263 911.0 650 73.5
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 8.9e-263 910.2 647 73.1
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.5e-262 909.4 656 72.0
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 7.6e-262 907.1 652 71.8
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 2.2e-261 905.6 639 74.5
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 4.9e-261 904.4 645 74.9
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 7.1e-260 900.6 641 72.7
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 2.1e-259 899.0 647 73.4
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.3e-258 896.3 650 72.5
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 3.6e-256 888.3 647 71.6
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 3.6e-256 888.3 660 70.6
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 4.7e-256 887.9 655 70.4
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.8e-255 885.9 650 71.7
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 4.0e-255 884.8 652 71.2
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 6.8e-255 884.0 630 74.8
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 8.9e-255 883.6 658 70.5
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.2e-254 883.2 656 70.7
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 2.0e-254 882.5 655 70.7
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 4.4e-254 881.3 665 69.8
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 4.4e-254 881.3 667 69.1
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 5.8e-254 880.9 655 70.1
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 9.9e-254 880.2 657 70.3
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.7e-253 879.4 650 70.5
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 1.7e-253 879.4 650 70.5
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 2.9e-253 878.6 650 70.3
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 3.8e-253 878.2 654 70.6
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 3.8e-253 878.2 655 70.5
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 6.4e-253 877.5 652 70.4
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 4.2e-252 874.8 627 73.5
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 5.4e-252 874.4 647 70.5
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 1.6e-251 872.8 659 69.5
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 4.6e-251 871.3 661 69.6
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.3e-250 869.8 654 70.0
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 1.7e-250 869.4 663 69.4
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 2.3e-250 869.0 656 69.1
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 3.0e-250 868.6 656 69.8
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 3.9e-250 868.2 649 70.3
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 5.1e-250 867.8 597 74.9
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 3.3e-249 865.1 656 69.4
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 5.6e-249 864.4 647 71.6
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.3e-248 863.2 606 74.8
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 2.1e-248 862.4 652 68.9
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 3.6e-248 861.7 647 70.8
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.8e-247 859.4 653 69.8
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.3e-247 857.8 649 70.0
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 5.3e-247 857.8 646 70.6
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 2.2e-245 852.4 651 69.7
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 6.4e-245 850.9 641 70.4
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.1e-244 850.1 640 70.2
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 5.4e-244 847.8 653 68.6
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 2.1e-243 845.9 649 70.1
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 2.7e-243 845.5 655 69.8
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 7.8e-243 844.0 661 68.2
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 3.0e-242 842.0 649 67.6
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 7.3e-241 837.4 650 69.4
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.4e-238 828.6 652 66.4
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 3.0e-234 815.5 644 68.9
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.6e-230 802.4 643 66.3
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 5.8e-230 801.2 653 65.1
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.1e-223 780.4 654 64.5
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 9.0e-223 777.3 654 64.2
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.2e-220 768.8 646 62.2
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.8e-215 753.1 629 66.0
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.2e-213 746.1 649 63.2
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 6.7e-210 734.6 649 60.7
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.6e-206 722.6 648 60.6
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 8.5e-205 717.6 544 71.7
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.4e-199 699.5 651 57.6
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.3e-199 698.4 638 60.5
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.3e-194 682.9 641 60.7
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 3.8e-189 665.6 652 56.4
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.1e-188 664.1 654 55.8
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 3.0e-186 656.0 628 58.8
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 9.8e-177 624.4 648 54.6
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.3e-160 570.9 551 58.4
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 3.3e-156 556.2 635 52.6
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 3.5e-150 536.2 667 47.5
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 5.2e-146 522.3 668 44.9
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 1.2e-126 458.0 673 41.3
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 6.7e-117 425.6 351 66.1
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 6.5e-112 409.1 344 65.1
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 8.5e-96 355.5 399 51.1
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 8.8e-93 345.5 243 70.0
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 7.0e-66 256.1 299 50.5
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 2.3e-45 188.0 118 83.9
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 9.5e-39 166.0 565 27.6
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 1.2e-36 159.1 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 2.3e-29 134.8 115 66.1
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 3.0e-16 91.3 99 57.6
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 1.9e-10 72.0 46 69.6
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 2.4e-10 71.6 89 43.8
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 5.4e-10 70.5 55 61.8
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.7e-09 68.2 51 54.9
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 8.7e-08 63.2 49 63.3


User provided reference genes

Program Settings