Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G013160 Citrullus lanatus HOM05D000569 ORTHO05D000418 5.4e-110 401.0 199 100.0
MELO3C017491.2 Cucumis melo HOM05D000569 ORTHO05D000418 2.2e-79 299.3 212 77.8
CsaV3_1G031310 Cucumis sativus L. HOM05D000569 ORTHO05D000418 6.5e-79 297.7 210 78.1
Sed0003533 Sechium edule HOM05D000569 ORTHO05D000418 1.7e-63 246.5 205 68.8
Cpa.g.sc95.69 Carica papaya HOM05D000569 ORTHO05D000418 3.5e-40 169.1 236 49.2
Ciclev10010364m.g Citrus clementina HOM05D000569 ORTHO05D000418 1.0e-36 157.5 217 48.4
MD13G1266500 Malus domestica HOM05D000569 ORTHO05D000418 7.5e-35 151.4 253 43.1
FAN12G0777 Fragaria x ananassa HOM05D000569 ORTHO05D000418 8.3e-34 147.9 232 44.0
Thecc.09G168200 Theobroma cacao HOM05D000569 ORTHO05D000418 2.4e-33 146.4 236 44.5
RcHm_v2.0_Chr4g0403351 Rosa chinensis HOM05D000569 ORTHO05D000418 3.1e-33 146.0 237 44.3
FAN17G3004 Fragaria x ananassa HOM05D000569 ORTHO05D000418 9.1e-33 144.4 233 44.6
Phvul.003G148200 Phaseolus vulgaris HOM05D000569 ORTHO05D000418 1.2e-32 144.1 228 46.1
Gorai.009G006700 Gossypium raimondii HOM05D000569 ORTHO05D000418 2.0e-32 143.3 218 44.5
MD16G1266600 Malus domestica HOM05D000569 ORTHO05D000418 2.0e-32 143.3 253 42.3
Prupe.1G089700 Prunus persica HOM05D000569 ORTHO05D000418 3.5e-32 142.5 256 42.2
FAN07G0351 Fragaria x ananassa HOM05D000569 ORTHO05D000418 4.5e-32 142.1 233 44.2
Haze_22125 Corylus avellana HOM05D000569 ORTHO05D000418 7.7e-32 141.4 214 46.3
Gohir.D05G006600 Gossypium hirsutum HOM05D000569 ORTHO05D000418 7.7e-32 141.4 214 44.4
Potri.018G095900 Populus trichocarpa HOM05D000569 ORTHO05D000418 1.7e-31 140.2 234 42.7
Duzib150G1603 Durio zibethinus HOM05D000569 ORTHO05D000418 2.2e-31 139.8 237 43.9
FAN22G2338 Fragaria x ananassa HOM05D000569 ORTHO05D000418 2.2e-31 139.8 233 43.8
Sabra18G0081800 Salix brachista HOM05D000569 ORTHO05D000418 2.2e-31 139.8 235 43.0
Duzib168G0838 Durio zibethinus HOM05D000569 ORTHO05D000418 5.0e-31 138.7 238 43.3
Gohir.A05G005900 Gossypium hirsutum HOM05D000569 ORTHO05D000418 6.5e-31 138.3 218 43.1
Cc06_g13520 Coffea canephora HOM05D000569 ORTHO05D000418 1.1e-30 137.5 205 45.9
VMungo1215G2303 Vigna mungo HOM05D000569 ORTHO05D000418 4.2e-30 135.6 231 42.9
Atru.chr7.727 Acer truncatum HOM05D000569 ORTHO05D000418 3.6e-29 132.5 230 43.0
GSVIVG01029145001 Vitis vinifera HOM05D000569 ORTHO05D000418 8.0e-29 131.3 233 42.5
Lj9C688G7 Lonicera japonica HOM05D000569 ORTHO05D000418 2.3e-28 129.8 214 43.9
QL02p097031 Quercus lobata HOM05D000569 ORTHO05D000418 5.2e-28 128.6 222 41.9
CSS0007776 Camellia sinensis var. sinensis HOM05D000569 ORTHO05D000418 8.8e-28 127.9 208 45.7
CiPaw.07G189700 Carya illinoinensis HOM05D000569 ORTHO05D000418 1.5e-27 127.1 231 43.3
Glyma.13G094400 Glycine max HOM05D000569 ORTHO05D000418 1.5e-27 127.1 225 41.3
FvH4_4g09030 Fragaria vesca HOM05D000569 ORTHO05D000418 2.6e-27 126.3 205 44.4
Manes.06G024800 Manihot esculenta HOM05D000569 ORTHO05D000418 7.5e-27 124.8 229 42.4
Nitab4.5_0000244g0260 Nicotiana tabacum HOM05D000569 ORTHO05D000418 7.5e-27 124.8 232 41.4
Glyma.17G065800 Glycine max HOM05D000569 ORTHO05D000418 2.8e-26 122.9 234 40.2
DCAR_014707 Daucus carota HOM05D000569 ORTHO05D000418 4.9e-26 122.1 198 42.4
TAR626G0124 Trochodendron aralioides HOM05D000569 ORTHO05D000418 6.3e-26 121.7 223 40.4
Nitab4.5_0004621g0030 Nicotiana tabacum HOM05D000569 ORTHO05D000418 8.3e-26 121.3 239 40.6
CiPaw.08G037400 Carya illinoinensis HOM05D000569 ORTHO05D000418 1.4e-25 120.6 225 42.7
Lalb_Chr07g0180271 Lupinus albus HOM05D000569 ORTHO05D000418 3.1e-25 119.4 223 39.0
DCAR_017965 Daucus carota HOM05D000569 ORTHO05D000418 4.1e-25 119.0 193 43.5
Solyc07g006750.3 Solanum lycopersicum HOM05D000569 ORTHO05D000418 4.1e-25 119.0 223 40.8
TWI32G0548 Tripterygium wilfordii HOM05D000569 ORTHO05D000418 4.1e-25 119.0 207 41.5
Sopen07g002850 Solanum pennellii HOM05D000569 ORTHO05D000418 7.0e-25 118.2 223 39.5
PGSC0003DMG400018750 Solanum tuberosum HOM05D000569 ORTHO05D000418 9.2e-25 117.9 220 40.5
MSTRG.26232 Avicennia marina HOM05D000569 ORTHO05D000418 2.7e-24 116.3 221 39.4
COL.COLO4_38416 Corchorus olitorius HOM05D000569 ORTHO05D000418 3.5e-24 115.9 227 41.0
CSS0049603 Camellia sinensis var. sinensis HOM05D000569 ORTHO05D000418 4.5e-24 115.5 206 40.3
Dinv41273 Davidia involucrata HOM05D000569 ORTHO05D000418 1.3e-23 114.0 212 45.3
Aqoxy7G03135 Aquilegia oxysepala HOM05D000569 ORTHO05D000418 1.7e-23 113.6 224 40.6
Sabra06G0131700 Salix brachista HOM05D000569 ORTHO05D000418 1.7e-23 113.6 240 39.6
Medtr4g128670 Medicago truncatula HOM05D000569 ORTHO05D000418 2.9e-23 112.8 210 41.4
TWI34G0716 Tripterygium wilfordii HOM05D000569 ORTHO05D000418 2.5e-22 109.8 201 40.3
TAR383G0077 Trochodendron aralioides HOM05D000569 ORTHO05D000418 2.5e-22 109.8 230 39.6
Potri.006G170800 Populus trichocarpa HOM05D000569 ORTHO05D000418 3.3e-22 109.4 236 38.6
Potri.006G171184 Populus trichocarpa HOM05D000569 ORTHO05D000418 3.3e-22 109.4 236 38.6
Lj4g0008326 Lotus japonicus HOM05D000569 ORTHO05D000418 5.6e-22 108.6 240 38.8
Lalb_Chr13g0300361 Lupinus albus HOM05D000569 ORTHO05D000418 5.6e-22 108.6 217 41.0
MSTRG.10733 Avicennia marina HOM05D000569 ORTHO05D000418 9.5e-22 107.8 223 39.5
Peaxi162Scf00050g00512 Petunia axillaris HOM05D000569 ORTHO05D000418 1.2e-21 107.5 224 40.2
vmacro13105 Vaccinium macrocarpon HOM05D000569 ORTHO05D000418 3.6e-21 105.9 187 42.8
CAN.G584.17 Capsicum annuum HOM05D000569 ORTHO05D000418 4.7e-21 105.5 201 39.8
Lalb_Chr12g0199231 Lupinus albus HOM05D000569 ORTHO05D000418 1.8e-20 103.6 229 37.1
Actinidia04135 Actinidia chinensis HOM05D000569 ORTHO05D000418 3.0e-20 102.8 176 43.8
Psat4g012160 Pisum sativum HOM05D000569 ORTHO05D000418 4.0e-20 102.4 204 40.7
Lsat_1_v5_gn_8_67501 Lactuca sativa HOM05D000569 ORTHO05D000418 6.8e-20 101.7 219 36.1
Duzib170G1049 Durio zibethinus HOM05D000569 ORTHO05D000418 1.5e-19 100.5 227 38.3
Hma1.2p1_2725F.1_g327550 Hydrangea macrophylla HOM05D000569 ORTHO05D000418 2.6e-19 99.8 200 42.0
TPR.G15215 Trifolium pratense HOM05D000569 ORTHO05D000418 3.4e-19 99.4 224 36.6
Actinidia17324 Actinidia chinensis HOM05D000569 ORTHO05D000418 5.7e-19 98.6 181 39.8
HanXRQChr05g0137131 Helianthus annuus HOM05D000569 ORTHO05D000418 9.8e-19 97.8 222 36.0
Eucgr.C00190 Eucalyptus grandis HOM05D000569 ORTHO05D000418 1.3e-18 97.4 247 37.2
Hma1.2p1_2290F.1_g319030 Hydrangea macrophylla HOM05D000569 ORTHO05D000418 1.3e-18 97.4 203 41.9
MBI14_g22127_MAGBIO Magnolia biondii HOM05D000569 ORTHO05D000418 2.2e-18 96.7 204 35.3
Oeu009847.1 Olea europaea HOM05D000569 ORTHO05D000418 2.2e-18 96.7 199 40.2
Nn2g12651 Nelumbo nucifera HOM05D000569 ORTHO05D000418 2.9e-18 96.3 239 37.2
Ca_21204_v3 Cicer arietinum L. HOM05D000569 ORTHO05D000418 6.4e-18 95.1 226 36.7
Eucgr.C02391 Eucalyptus grandis HOM05D000569 ORTHO05D000418 6.4e-18 95.1 234 35.9
Eucgr.C02280 Eucalyptus grandis HOM05D000569 ORTHO05D000418 1.4e-17 94.0 230 36.1
PSO210G0287 Papaver somniferum HOM05D000569 ORTHO05D000418 2.4e-17 93.2 258 33.3
Gohir.D13G215900 Gossypium hirsutum HOM05D000569 ORTHO05D000418 9.2e-17 91.3 197 37.6
HanXRQChr03g0069011 Helianthus annuus HOM05D000569 ORTHO05D000418 1.6e-16 90.5 206 35.4
Oeu031627.1 Olea europaea HOM05D000569 ORTHO05D000418 1.6e-16 90.5 186 39.2
Gorai.013G246200 Gossypium raimondii HOM05D000569 ORTHO05D000418 2.7e-16 89.7 197 37.6
Gohir.A13G211800 Gossypium hirsutum HOM05D000569 ORTHO05D000418 3.5e-16 89.4 197 37.1
Lsat_1_v5_gn_7_51901 Lactuca sativa HOM05D005572 ORTHO05D000418 3.5e-16 89.4 204 37.3
PSO223G0014 Papaver somniferum HOM05D000569 ORTHO05D000418 3.5e-16 89.4 258 33.3
Rhsim01G0007200 Rhododendron simsii HOM05D000569 ORTHO05D000418 4.6e-16 89.0 207 37.7
Dinv42748 Davidia involucrata HOM05D000569 ORTHO05D000418 3.0e-15 86.3 67 64.2
Dinv43354 Davidia involucrata HOM05D000569 ORTHO05D000418 3.0e-15 86.3 67 64.2
ECA240G2131 Erigeron canadensis HOM05D000569 ORTHO05D000418 3.0e-15 86.3 203 36.5
MBI16_g32009_MAGBIO Magnolia biondii HOM05D000569 ORTHO05D000418 3.0e-15 86.3 212 32.5
Rhsim03G0263500 Rhododendron simsii HOM05D000569 ORTHO05D000418 3.9e-15 85.9 190 37.9
HanXRQChr09g0245091 Helianthus annuus HOM05D000569 ORTHO05D000418 9.5e-14 81.3 214 34.6
SalBow1G7808 Salvia bowleyana HOM05D000569 ORTHO05D000418 9.5e-14 81.3 196 34.2
Hma1.2p1_1493F.1_g286833 Hydrangea macrophylla HOM05D000569 ORTHO05D000418 2.1e-13 80.1 81 55.6
arahy.Tifrunner.gnm1.ann1.5EJ7X6 Arachis hypogaea HOM05D000569 ORTHO05D000418 2.8e-13 79.7 264 33.7
Migut.J01464 Erythranthe guttata HOM05D000569 ORTHO05D000418 4.7e-13 79.0 201 34.3
HanXRQChr09g0245101 Helianthus annuus HOM05D000569 ORTHO05D000418 4.7e-13 79.0 212 35.4
CANSAT56G4032 Cannabis sativa HOM05D000569 ORTHO05D000418 1.1e-12 77.8 136 39.7
SGA_v2.0_scaffold66G22472 Striga asiatica HOM05D000569 ORTHO05D000418 1.8e-12 77.0 201 35.3
SGA_v2.0_scaffold69G23281 Striga asiatica HOM05D000569 ORTHO05D000418 5.2e-12 75.5 207 35.3
arahy.Tifrunner.gnm1.ann1.651GAD Arachis hypogaea HOM05D000569 ORTHO05D000418 1.2e-11 74.3 260 30.8
Aa31LG3G13460 Aethionema arabicum HOM05D000569 ORTHO05D000418 7.5e-11 71.6 197 35.5
ClCG11G012500 Citrullus lanatus HOM05D000569 ORTHO05D000418 9.8e-11 71.2 200 32.0
PGR142G2277 Punica granatum HOM05D000569 ORTHO05D000418 2.2e-10 70.1 62 61.3
THA.LOC104817805 Tarenaya hassleriana HOM05D000569 ORTHO05D000418 1.4e-09 67.4 221 33.5
Sc08g0005530 Simmondsia chinensis HOM05D000569 ORTHO05D000418 1.9e-09 67.0 214 31.8
Carub.0008s1812 Capsella rubella HOM05D000569 ORTHO05D000418 5.4e-09 65.5 197 33.0
PGR102G0509 Punica granatum HOM05D000569 ORTHO05D000418 5.4e-09 65.5 231 30.3
AUR62039999 Chenopodium quinoa HOM05D000569 ORTHO05D000418 7.0e-09 65.1 65 58.5
Sp6g19310 Schrenkiella parvula HOM05D000569 ORTHO05D000418 7.0e-09 65.1 195 34.4
CARHR271380 Cardamine hirsuta HOM05D000569 ORTHO05D000418 1.6e-08 63.9 208 32.2
A02p08370 Brassica napus HOM05D000569 ORTHO05D000418 2.0e-08 63.5 187 33.2
BraA02t05906Z Brassica rapa HOM05D000569 ORTHO05D000418 2.0e-08 63.5 187 33.2
C02p14090 Brassica napus HOM05D000569 ORTHO05D000418 2.7e-08 63.2 187 33.2
BolC2t07529H Brassica oleracea HOM05D000569 ORTHO05D000418 2.7e-08 63.2 187 33.2
AT5G57620 Arabidopsis thaliana HOM05D000569 ORTHO05D000418 4.6e-08 62.4 195 32.8
Oeu002540.1 Olea europaea HOM05D000569 ORTHO05D000418 6.0e-08 62.0 194 35.1
Oeu002541.1 Olea europaea HOM05D000569 ORTHO05D000418 6.0e-08 62.0 194 35.1
BcaC03g14140 Brassica carinata HOM05D000569 ORTHO05D000418 7.8e-08 61.6 181 33.1
AL8G33640 Arabidopsis lyrata HOM05D000569 ORTHO05D000418 1.0e-07 61.2 193 33.2
CDE04G0449 Ceratophyllum demersum HOM05D000569 ORTHO05D000418 1.0e-07 61.2 200 29.0
Thhalv10015689m.g Eutrema salsugineum HOM05D000569 ORTHO05D000418 1.0e-07 61.2 197 30.5
SalBow6G6456 Salvia bowleyana HOM05D000569 ORTHO05D000418 1.0e-07 61.2 199 30.2
BcaC04g19947 Brassica carinata HOM05D000217 ORTHO05D000121 1.3e-07 60.8 191 31.4
C03p14890 Brassica napus HOM05D000569 ORTHO05D000418 1.3e-07 60.8 195 32.8
C09p49480 Brassica napus HOM05D000569 ORTHO05D000418 1.3e-07 60.8 191 31.4
BolC3t13932H Brassica oleracea HOM05D000569 ORTHO05D000418 1.3e-07 60.8 195 32.8
BolC9t57802H Brassica oleracea HOM05D000569 ORTHO05D000418 1.3e-07 60.8 191 31.4
BraA03t10582Z Brassica rapa HOM05D000569 ORTHO05D000418 1.3e-07 60.8 195 33.8
Migut.K00256 Erythranthe guttata HOM05D000569 ORTHO05D000418 1.7e-07 60.5 61 47.5
HanXRQChr09g0255551 Helianthus annuus HOM05D000569 ORTHO05D000418 1.7e-07 60.5 169 32.5
A03p12690 Brassica napus HOM05D000569 ORTHO05D000418 2.3e-07 60.1 195 33.8
BcaC01g06479 Brassica carinata HOM05D000569 ORTHO05D000418 5.0e-07 58.9 195 32.3
THA.LOC104811806 Tarenaya hassleriana HOM05D000569 ORTHO05D000418 5.0e-07 58.9 224 32.6
EL10Ac8g18270 Beta vulgaris HOM05D000569 ORTHO05D000418 1.5e-06 57.4 84 48.8
BcaB05g22356 Brassica carinata HOM05D000569 ORTHO05D000418 1.9e-06 57.0 178 32.6


User provided reference genes

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