Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 1.3e-235 819.3 392 100.0
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 5.9e-177 624.4 327 90.2
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 1.7e-155 553.1 326 78.5
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 7.3e-151 537.7 324 77.5
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 1.6e-150 536.6 372 68.3
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 6.2e-150 534.6 388 66.8
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 6.8e-149 531.2 352 71.3
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 1.5e-148 530.0 386 67.4
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 2.6e-148 529.3 367 69.5
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 4.4e-148 528.5 316 81.3
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 7.6e-148 527.7 405 65.4
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 7.6e-148 527.7 339 71.7
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 1.3e-147 526.9 319 75.5
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 8.4e-147 524.2 315 76.8
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.1e-146 523.9 403 65.0
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.4e-146 523.5 399 64.9
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.4e-146 522.7 309 78.0
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 5.4e-146 521.5 310 78.1
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 5.4e-146 521.5 321 73.8
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 7.1e-146 521.2 309 77.0
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 7.1e-146 521.2 384 66.9
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 7.1e-146 521.2 344 72.1
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 9.2e-146 520.8 336 73.5
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 9.2e-146 520.8 313 77.0
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 9.2e-146 520.8 392 65.6
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 9.2e-146 520.8 310 77.1
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.2e-145 520.4 328 74.1
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 1.2e-145 520.4 335 73.7
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 1.2e-145 520.4 335 73.7
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.2e-145 520.4 319 75.2
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 1.6e-145 520.0 321 75.4
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 2.1e-145 519.6 309 77.3
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 2.1e-145 519.6 309 76.7
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 2.7e-145 519.2 322 74.2
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.0e-145 518.1 329 73.3
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 7.8e-145 517.7 309 77.3
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 7.8e-145 517.7 308 77.3
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 7.8e-145 517.7 309 77.3
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 1.0e-144 517.3 308 77.3
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.3e-144 516.9 326 73.6
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 2.3e-144 516.2 313 76.0
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 3.0e-144 515.8 309 76.7
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.9e-144 515.4 326 73.0
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 5.1e-144 515.0 312 76.3
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 8.6e-144 514.2 319 73.4
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.1e-143 513.8 313 75.4
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 1.1e-143 513.8 323 71.5
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.5e-143 513.5 319 73.7
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 1.9e-143 513.1 309 76.7
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 1.9e-143 513.1 314 76.1
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 2.5e-143 512.7 324 73.5
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 4.3e-143 511.9 332 71.1
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 5.6e-143 511.5 314 75.5
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 5.6e-143 511.5 339 70.5
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 7.3e-143 511.1 320 73.4
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 9.6e-143 510.8 329 72.3
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.2e-142 510.4 312 75.0
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 1.6e-142 510.0 319 73.0
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.8e-142 509.2 330 70.6
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.8e-142 509.2 305 76.4
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 2.8e-142 509.2 387 64.3
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.7e-142 508.4 397 64.7
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 1.4e-141 506.9 354 68.9
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.4e-141 506.9 304 77.3
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 2.4e-141 506.1 344 70.6
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 2.4e-141 506.1 307 76.9
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 1.2e-140 503.8 409 61.9
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 1.5e-140 503.4 323 71.5
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 2.0e-140 503.1 324 72.8
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 2.0e-140 503.1 317 73.2
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 2.6e-140 502.7 322 72.0
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 5.8e-140 501.5 317 73.2
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 9.9e-140 500.7 309 72.5
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 1.3e-139 500.4 314 72.6
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.7e-139 500.0 311 74.6
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 1.7e-139 500.0 319 73.4
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 4.9e-139 498.4 334 69.8
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 6.4e-139 498.0 310 74.2
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 8.4e-139 497.7 316 73.4
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 8.4e-139 497.7 316 73.7
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.1e-138 497.3 341 69.5
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.4e-138 496.9 310 75.2
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.4e-138 496.1 310 74.8
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 5.4e-138 495.0 331 70.7
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.7e-137 492.7 309 72.8
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 4.6e-137 491.9 387 61.8
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 3.9e-136 488.8 319 72.4
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.5e-135 486.9 310 74.8
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 4.3e-135 485.3 393 61.1
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 7.3e-135 484.6 307 73.0
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 2.8e-134 482.6 309 71.8
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 2.8e-134 482.6 384 62.2
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.4e-133 480.3 337 69.1
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 2.4e-133 479.6 309 71.5
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 3.1e-133 479.2 307 71.3
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 2.0e-132 476.5 343 66.8
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 3.4e-132 475.7 313 73.2
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.3e-131 473.8 309 71.5
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 2.1e-129 466.5 304 72.7
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.7e-129 466.1 309 70.2
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.3e-127 459.1 307 69.1
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.7e-123 446.8 309 66.7
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.6e-121 440.3 312 68.6
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 4.6e-121 438.7 300 68.0
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 3.9e-120 435.6 313 68.7
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 1.8e-117 426.8 306 64.1
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 4.0e-117 425.6 310 67.1
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 5.3e-117 425.2 305 68.5
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.1e-114 417.5 401 54.4
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 7.1e-114 414.8 305 66.6
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 9.3e-114 414.5 345 59.7
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 2.1e-113 413.3 315 60.3
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.1e-112 408.7 487 47.4
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 3.3e-111 406.0 316 58.9
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 5.7e-111 405.2 284 65.1
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 6.3e-110 401.7 275 66.2
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.1e-109 401.0 307 59.9
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.8e-109 400.2 251 78.5
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 5.5e-106 388.7 302 59.9
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.4e-101 374.0 309 56.0
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 2.5e-98 363.2 209 78.9
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 2.5e-90 336.7 201 77.1
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 3.6e-89 332.8 199 75.4
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 5.2e-88 328.9 214 71.0
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 8.5e-83 311.6 261 61.7
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 8.0e-81 305.1 176 76.1
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.1e-77 294.7 163 87.7
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 1.8e-77 293.9 181 74.0
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 1.4e-72 277.7 302 46.4
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.9e-67 260.0 296 50.7
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 4.6e-44 183.0 208 43.8
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.1e-37 159.8 99 75.8
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 5.4e-37 159.5 87 81.6
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.0e-27 128.6 94 62.8
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 3.6e-25 120.2 82 68.3
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.7e-25 119.8 91 62.6
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 4.0e-24 116.7 313 27.8
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.7e-22 111.3 78 65.4
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 2.1e-20 104.4 316 28.2
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.0e-20 102.8 73 65.8
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 2.1e-17 94.4 62 74.2
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 9.9e-15 85.5 181 30.9
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 7.4e-10 69.3 41 70.7
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 1.6e-09 68.2 264 26.1
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.6e-09 68.2 54 61.1
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.0e-08 62.4 48 56.2
arahy.Tifrunner.gnm1.ann1.6LUE8P Arachis hypogaea HOM05D005241 ORTHO05D005862 3.4e-07 60.5 47 57.4


User provided reference genes

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