Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 9.1e-99 363.6 189 100.0
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 3.3e-93 345.1 189 95.2
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.5e-88 329.7 190 91.6
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 3.8e-81 305.1 168 94.0
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.7e-68 263.1 196 74.5
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.9e-68 262.3 192 73.4
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 4.1e-67 258.5 197 71.1
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 6.0e-66 254.6 197 72.1
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 6.0e-66 254.6 196 73.5
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 1.7e-65 253.1 193 73.6
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 2.3e-65 252.7 197 71.1
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 3.0e-65 252.3 186 74.2
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 6.6e-65 251.1 197 71.1
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 6.6e-65 251.1 197 69.5
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 8.6e-65 250.8 196 70.9
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 3.3e-64 248.8 194 71.1
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 4.3e-64 248.4 197 71.6
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 7.3e-64 247.7 194 71.6
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 7.3e-64 247.7 195 71.3
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 7.3e-64 247.7 197 70.6
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 2.8e-63 245.7 197 70.1
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 3.6e-63 245.4 193 71.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.8e-62 243.0 195 69.7
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.8e-62 243.0 195 69.7
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 5.2e-62 241.5 195 69.2
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 6.8e-62 241.1 188 72.9
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 8.9e-62 240.7 197 68.0
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 1.2e-61 240.4 197 69.5
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.5e-61 240.0 142 88.7
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.6e-61 239.2 195 67.7
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.5e-61 237.7 195 67.7
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 7.5e-61 237.7 195 67.7
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 1.7e-60 236.5 196 69.4
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.9e-60 235.7 187 70.1
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 3.7e-60 235.3 204 68.1
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 4.9e-60 235.0 189 69.8
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 6.4e-60 234.6 189 67.7
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.1e-59 233.8 189 69.8
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 1.4e-59 233.4 194 68.0
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 1.4e-59 233.4 197 67.5
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.4e-59 233.4 189 69.8
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 1.9e-59 233.0 140 85.7
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 1.9e-59 233.0 189 69.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 1.9e-59 233.0 192 69.8
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 1.9e-59 233.0 193 68.4
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 4.1e-59 231.9 197 67.0
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 4.1e-59 231.9 197 68.5
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 7.0e-59 231.1 197 66.5
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.2e-58 230.3 181 70.2
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.2e-58 230.3 198 66.2
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.1e-58 229.6 185 68.6
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.7e-58 229.2 146 81.5
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 6.0e-58 228.0 197 65.0
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 6.0e-58 228.0 147 83.0
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 7.8e-58 227.6 143 83.2
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.0e-57 227.3 185 68.1
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.3e-57 226.9 179 72.1
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 1.3e-57 226.9 196 66.3
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.7e-57 226.5 196 67.3
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 1.7e-57 226.5 188 68.1
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.3e-57 226.1 185 68.1
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 2.3e-57 226.1 197 66.5
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 2.3e-57 226.1 193 67.4
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.3e-57 226.1 144 80.6
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 3.0e-57 225.7 196 64.8
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.9e-57 225.3 195 66.2
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 6.6e-57 224.6 143 82.5
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.5e-56 223.4 189 65.1
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 2.5e-56 222.6 186 67.2
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 3.3e-56 222.2 195 66.7
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 7.3e-56 221.1 195 66.7
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 7.3e-56 221.1 194 66.0
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 2.8e-55 219.2 190 65.8
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.8e-55 219.2 194 66.0
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.8e-55 219.2 195 63.1
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 3.6e-55 218.8 195 64.6
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.6e-55 218.8 195 65.1
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 4.7e-55 218.4 188 64.4
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 4.7e-55 218.4 162 72.2
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.1e-54 217.2 190 70.0
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 1.4e-54 216.9 195 63.6
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 1.8e-54 216.5 202 64.4
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 5.2e-54 214.9 196 62.8
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 5.2e-54 214.9 152 76.3
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 5.2e-54 214.9 204 63.7
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 6.8e-54 214.5 197 62.4
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 1.5e-53 213.4 191 64.9
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.0e-53 213.0 191 64.9
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 2.6e-53 212.6 154 74.0
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.4e-53 212.2 170 68.8
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.7e-52 209.9 147 78.2
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 2.2e-52 209.5 145 77.2
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 2.2e-52 209.5 145 77.2
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 2.2e-52 209.5 145 77.2
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 2.2e-52 209.5 145 77.2
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.2e-52 209.5 146 76.7
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.2e-52 209.5 194 63.4
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 2.9e-52 209.1 196 64.3
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.9e-52 209.1 152 76.3
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 3.7e-52 208.8 194 62.9
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 3.7e-52 208.8 140 77.9
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 4.9e-52 208.4 144 76.4
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 4.9e-52 208.4 167 69.5
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 4.9e-52 208.4 171 69.6
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 6.4e-52 208.0 167 69.5
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 6.4e-52 208.0 144 77.1
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 6.4e-52 208.0 164 68.9
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 6.4e-52 208.0 195 64.1
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.1e-51 207.2 164 73.2
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.1e-51 207.2 164 69.5
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.1e-51 207.2 194 63.4
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.9e-51 206.5 194 62.4
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.9e-51 206.5 146 76.7
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.4e-51 206.1 191 65.4
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 3.2e-51 205.7 141 78.0
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 7.1e-51 204.5 194 61.9
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 4.6e-50 201.8 153 75.2
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 4.6e-50 201.8 188 62.8
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 7.8e-50 201.1 188 63.3
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 7.8e-50 201.1 150 76.0
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 7.8e-50 201.1 179 62.6
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 1.0e-49 200.7 152 72.4
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.0e-49 200.7 184 65.8
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 6.6e-49 198.0 196 59.7
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 3.3e-48 195.7 159 67.9
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 9.5e-48 194.1 172 66.3
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.2e-47 193.7 115 87.0
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 4.7e-47 191.8 164 65.9
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 8.1e-47 191.0 141 75.2
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.8e-46 189.9 137 77.4
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 4.0e-46 188.7 112 87.5
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 2.0e-45 186.4 113 85.0
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.4e-45 185.3 185 59.5
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.3e-44 183.7 115 83.5
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.3e-44 183.7 115 83.5
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 2.9e-44 182.6 113 83.2
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 8.4e-44 181.0 188 56.9
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.1e-43 180.6 188 56.9
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 3.2e-43 179.1 188 56.9
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 3.2e-43 179.1 160 60.0
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 2.1e-42 176.4 197 55.8
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.3e-41 173.7 111 82.0
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.3e-41 172.9 142 66.9
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.9e-41 172.2 165 63.6
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 8.7e-41 171.0 108 79.6
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 3.3e-40 169.1 187 54.0
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 3.6e-39 165.6 159 61.0
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 9.0e-38 161.0 124 71.0
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 2.6e-37 159.5 178 54.5
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 3.4e-37 159.1 113 72.6
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.4e-37 158.7 176 50.6
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 7.1e-35 151.4 154 59.7
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 9.3e-35 151.0 120 64.2
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.1e-34 149.8 163 54.6
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 4.6e-34 148.7 346 34.4
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 4.9e-28 128.6 127 59.1
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 9.3e-27 124.4 110 60.0
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 1.1e-24 117.5 109 55.0
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 3.4e-21 105.9 76 72.4
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 5.8e-21 105.1 134 44.8
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 7.6e-21 104.8 85 65.9
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 4.9e-20 102.1 86 65.1
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 8.4e-20 101.3 85 65.9
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 5.5e-19 98.6 85 64.7
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 5.5e-19 98.6 85 64.7
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.0e-17 94.4 98 57.1
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 4.9e-12 75.5 63 63.5
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 1.4e-11 73.9 49 77.6
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 1.9e-11 73.6 44 86.4
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 7.9e-10 68.2 39 87.2
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 2.4e-06 56.6 90 41.1


User provided reference genes

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