Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G012320 Citrullus lanatus HOM05D002136 ORTHO05D002145 4.1e-255 884.4 501 100.0
CsaV3_1G028840 Cucumis sativus L. HOM05D002136 ORTHO05D002145 1.8e-170 603.2 571 69.7
MELO3C010233.2 Cucumis melo HOM05D002136 ORTHO05D002145 1.4e-159 567.0 611 63.8
Sed0008209 Sechium edule HOM05D002136 ORTHO05D002145 2.1e-126 456.8 546 53.8
Prupe.7G261500 Prunus persica HOM05D002136 ORTHO05D002145 1.3e-75 288.1 627 40.2
Gorai.009G055500 Gossypium raimondii HOM05D002136 ORTHO05D002145 6.8e-69 265.8 659 37.3
Manes.14G112628 Manihot esculenta HOM05D002136 ORTHO05D002145 3.8e-67 260.0 658 38.6
CANSAT11G0512 Cannabis sativa HOM05D002136 ORTHO05D002145 2.1e-65 254.2 668 34.3
Duzib168G2318 Durio zibethinus HOM05D002136 ORTHO05D002145 1.7e-64 251.1 704 37.5
Gohir.D05G053700 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.7e-64 251.1 659 37.0
Phvul.005G040700 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 8.7e-64 248.8 601 40.3
Glyma.02G203100 Glycine max HOM05D002136 ORTHO05D002145 1.5e-63 248.1 610 35.9
Gorai.010G112500 Gossypium raimondii HOM05D002136 ORTHO05D002145 1.9e-63 247.7 596 36.7
FvH4_1g01050 Fragaria vesca HOM05D002136 ORTHO05D002145 7.3e-63 245.7 640 37.5
Thecc.09G032000 Theobroma cacao HOM05D002136 ORTHO05D002145 9.6e-63 245.4 711 35.4
Gohir.D13G190800 Gossypium hirsutum HOM05D002136 ORTHO05D002145 8.1e-62 242.3 577 35.2
Potri.006G185700 Populus trichocarpa HOM05D002136 ORTHO05D002145 2.4e-61 240.7 721 33.4
Duzib150G0547 Durio zibethinus HOM05D002136 ORTHO05D002145 1.2e-60 238.4 670 38.1
Glyma.17G074600 Glycine max HOM05D002136 ORTHO05D002145 2.6e-60 237.3 593 36.8
Gohir.A13G184451 Gossypium hirsutum HOM05D002136 ORTHO05D002145 4.4e-60 236.5 608 32.7
TWI34G1274 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 4.4e-60 236.5 690 32.5
arahy.Tifrunner.gnm1.ann1.D8DRS0 Arachis hypogaea HOM05D002136 ORTHO05D002145 2.2e-59 234.2 591 33.8
Lalb_Chr07g0179811 Lupinus albus HOM05D002136 ORTHO05D002145 4.9e-59 233.0 617 37.4
Gohir.A06G096900 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.4e-58 231.5 595 35.8
RcHm_v2.0_Chr2g0085811 Rosa chinensis HOM05D002136 ORTHO05D002145 1.4e-58 231.5 698 35.4
Gorai.013G216600 Gossypium raimondii HOM05D002136 ORTHO05D002145 3.2e-58 230.3 610 34.9
arahy.Tifrunner.gnm1.ann1.CL36ZV Arachis hypogaea HOM05D002136 ORTHO05D002145 5.4e-58 229.6 591 35.4
Cfa020837 Carpinus fangiana HOM05D002136 ORTHO05D002145 6.0e-57 226.1 634 34.9
Gohir.A05G052200 Gossypium hirsutum HOM05D002136 ORTHO05D002145 2.5e-55 220.7 513 37.6
MD15G1153100 Malus domestica HOM05D002136 ORTHO05D002145 2.5e-55 220.7 674 36.9
Phvul.009G206800 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 3.3e-55 220.3 660 33.8
Potri.018G108200 Populus trichocarpa HOM05D002136 ORTHO05D002145 1.3e-54 218.4 711 35.0
Sabra06G0141000 Salix brachista HOM05D002136 ORTHO05D002145 1.6e-54 218.0 728 31.9
TWI63G0145 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 1.6e-54 218.0 675 36.1
Duzib187G1505 Durio zibethinus HOM05D002136 ORTHO05D002145 2.8e-54 217.2 685 32.4
Ca_05791_v3 Cicer arietinum L. HOM05D002136 ORTHO05D002145 4.8e-54 216.5 581 34.6
Ciclev10028046m.g Citrus clementina HOM05D002136 ORTHO05D002145 1.8e-53 214.5 582 36.1
Dinv42867 Davidia involucrata HOM05D000882 ORTHO05D001142 6.9e-53 212.6 658 33.6
Dinv43233 Davidia involucrata HOM05D000882 ORTHO05D001142 6.9e-53 212.6 658 33.6
VMungo1080G0769 Vigna mungo HOM05D002136 ORTHO05D002145 1.2e-52 211.8 574 34.5
Atru.chr7.100 Acer truncatum HOM05D002136 ORTHO05D002145 2.0e-52 211.1 645 36.3
Oeu021272.1 Olea europaea HOM05D002136 ORTHO05D002145 9.9e-52 208.8 609 34.3
Lj6g0008983 Lotus japonicus HOM05D002136 ORTHO05D002145 1.3e-51 208.4 713 34.5
Eucgr.C02575 Eucalyptus grandis HOM05D002136 ORTHO05D002145 1.7e-51 208.0 696 33.2
Gohir.D06G097400 Gossypium hirsutum HOM05D002136 ORTHO05D002145 8.4e-51 205.7 520 36.3
Medtr2g460800 Medicago truncatula HOM05D002136 ORTHO05D002145 3.2e-50 203.8 544 37.5
Migut.K00334 Erythranthe guttata HOM05D002136 ORTHO05D002145 4.2e-50 203.4 564 36.2
Actinidia38334 Actinidia chinensis HOM05D000882 ORTHO05D001142 5.4e-50 203.0 551 35.9
Aqoxy7G03429 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 1.2e-49 201.8 593 33.2
Peaxi162Scf00252g00119 Petunia axillaris HOM05D002136 ORTHO05D002145 1.2e-49 201.8 617 34.0
MSTRG.26283 Avicennia marina HOM05D002136 ORTHO05D002145 4.6e-49 199.9 624 32.7
PGR102G1057 Punica granatum HOM05D002136 ORTHO05D002145 1.1e-47 195.3 659 31.1
Manes.06G036600 Manihot esculenta HOM05D002136 ORTHO05D002145 1.5e-47 194.9 549 36.6
Actinidia04291 Actinidia chinensis HOM05D000882 ORTHO05D001142 2.5e-47 194.1 596 33.9
Cc06_g15140 Coffea canephora HOM05D002136 ORTHO05D002145 3.3e-47 193.7 660 35.8
MBI14_g24800_MAGBIO Magnolia biondii HOM05D002136 ORTHO05D002145 3.3e-47 193.7 568 33.8
QL02p093024 Quercus lobata HOM05D002136 ORTHO05D002145 4.3e-47 193.4 664 32.4
Lalb_Chr11g0072721 Lupinus albus HOM05D002136 ORTHO05D002145 5.6e-47 193.0 599 33.9
CiPaw.16G113900 Carya illinoinensis HOM05D002136 ORTHO05D002145 9.6e-47 192.2 616 34.4
Haze_19220 Corylus avellana HOM05D002136 ORTHO05D002145 1.3e-46 191.8 605 33.7
Glyma.06G221600 Glycine max HOM05D002136 ORTHO05D002145 1.8e-45 188.0 655 35.0
FAN19G2520 Fragaria x ananassa HOM05D002136 ORTHO05D002145 5.3e-45 186.4 658 33.3
Lalb_Chr08g0234111 Lupinus albus HOM05D002136 ORTHO05D002145 2.0e-44 184.5 598 32.1
HanXRQChr05g0148671 Helianthus annuus HOM05D002136 ORTHO05D002145 2.2e-43 181.0 602 32.7
FAN28G0826 Fragaria x ananassa HOM05D002136 ORTHO05D002145 2.9e-43 180.6 672 33.5
Nitab4.5_0005188g0020 Nicotiana tabacum HOM05D002136 ORTHO05D002145 7.1e-42 176.0 555 33.3
TAR636G1536 Trochodendron aralioides HOM05D002136 ORTHO05D002145 2.7e-41 174.1 642 33.2
MELO3C004426.2 Cucumis melo HOM05D002136 ORTHO05D002145 4.6e-41 173.3 531 33.0
Psat1g021960 Pisum sativum HOM05D002136 ORTHO05D002145 6.0e-41 172.9 469 35.4
DCAR_019386 Daucus carota HOM05D002136 ORTHO05D002145 1.3e-40 171.8 614 30.0
Rhsim01G0035300 Rhododendron simsii HOM05D000882 ORTHO05D001142 2.3e-40 171.0 572 34.8
PSO339G5388 Papaver somniferum HOM05D002136 ORTHO05D002145 8.7e-40 169.1 553 30.7
FAN26G0651 Fragaria x ananassa HOM05D002136 ORTHO05D002145 2.5e-39 167.5 641 35.1
CsaV3_2G003680 Cucumis sativus L. HOM05D002136 ORTHO05D002145 3.3e-39 167.2 534 31.8
BolC9t57832H Brassica oleracea HOM05D002136 ORTHO05D002145 7.4e-39 166.0 569 30.1
A10p16180 Brassica napus HOM05D002136 ORTHO05D002145 4.8e-38 163.3 590 33.2
Sabra18G0091800 Salix brachista HOM05D002136 ORTHO05D002145 1.1e-37 162.2 757 29.7
Nn8g39864 Nelumbo nucifera HOM05D002136 ORTHO05D002145 1.4e-37 161.8 235 44.7
C09p49820 Brassica napus HOM05D002136 ORTHO05D002145 2.4e-37 161.0 557 31.6
Lsat_1_v5_gn_8_61721 Lactuca sativa HOM05D002136 ORTHO05D002145 2.4e-37 161.0 607 30.0
ATR0739G045 Amborella trichopoda HOM05D002136 ORTHO05D002145 3.1e-37 160.6 294 39.1
TPR.G31935 Trifolium pratense HOM05D002136 ORTHO05D002145 9.0e-37 159.1 418 38.5
CiPaw.15G175400 Carya illinoinensis HOM05D002136 ORTHO05D002145 1.2e-36 158.7 725 28.8
DCAR_014814 Daucus carota HOM05D002136 ORTHO05D002145 1.5e-36 158.3 419 35.6
Sp6g19660 Schrenkiella parvula HOM05D002136 ORTHO05D002145 4.5e-36 156.8 412 37.4
CARHR271790 Cardamine hirsuta HOM05D002136 ORTHO05D002145 7.6e-36 156.0 565 32.7
Nn1g06026 Nelumbo nucifera HOM05D002136 ORTHO05D002145 1.7e-35 154.8 279 38.7
CAN.G551.37 Capsicum annuum HOM05D002136 ORTHO05D002145 2.2e-35 154.5 463 34.8
AL8G34080 Arabidopsis lyrata HOM05D002136 ORTHO05D002145 2.9e-35 154.1 563 31.1
Aqoxy6G02864 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 3.8e-35 153.7 299 37.8
SalBow1G7717 Salvia bowleyana HOM05D002136 ORTHO05D002145 5.0e-35 153.3 557 29.4
Carub.0008s1853 Capsella rubella HOM05D002136 ORTHO05D002145 8.4e-35 152.5 568 32.0
FAN23G0309 Fragaria x ananassa HOM05D002136 ORTHO05D002145 8.4e-35 152.5 604 34.3
C02p13700 Brassica napus HOM05D002136 ORTHO05D002145 3.2e-34 150.6 551 33.6
BolC2t07489H Brassica oleracea HOM05D002136 ORTHO05D002145 3.2e-34 150.6 551 33.6
Thhalv10013006m.g Eutrema salsugineum HOM05D002136 ORTHO05D002145 3.2e-34 150.6 585 30.6
PGSC0003DMG400011178 Solanum tuberosum HOM05D002136 ORTHO05D002145 4.2e-34 150.2 290 39.3
Sopen12g005000 Solanum pennellii HOM05D002136 ORTHO05D002145 9.3e-34 149.1 276 39.5
PGSC0003DMG400007900 Solanum tuberosum HOM05D002136 ORTHO05D002145 1.2e-33 148.7 286 39.5
AUR62039745 Chenopodium quinoa HOM05D002136 ORTHO05D002145 2.7e-33 147.5 231 42.0
MSTRG.6123 Avicennia marina HOM05D002136 ORTHO05D002145 4.6e-33 146.7 536 34.3
EL10Ac8g18853 Beta vulgaris HOM05D002136 ORTHO05D002145 4.6e-33 146.7 274 42.0
SGA_v2.0_scaffold206G41810 Striga asiatica HOM05D002136 ORTHO05D002145 4.6e-33 146.7 488 32.8
BraA10t43611Z Brassica rapa HOM05D002136 ORTHO05D002145 6.1e-33 146.4 589 31.1
Sed0006701 Sechium edule HOM05D002136 ORTHO05D002145 1.8e-32 144.8 500 30.8
Solyc12g010120.2 Solanum lycopersicum HOM05D002136 ORTHO05D002145 3.0e-32 144.1 275 40.0
BraA02t05879Z Brassica rapa HOM05D002136 ORTHO05D002145 3.9e-32 143.7 554 28.5
AT5G58000 Arabidopsis thaliana HOM05D002136 ORTHO05D002145 6.7e-32 142.9 565 32.0
A02p08060 Brassica napus HOM05D002136 ORTHO05D002145 8.7e-32 142.5 554 27.8
BcaB08g36161 Brassica carinata HOM05D002136 ORTHO05D002145 3.3e-31 140.6 435 32.4
SalBow1G7188 Salvia bowleyana HOM05D002136 ORTHO05D002145 3.3e-31 140.6 234 43.2
BcaB05g22392 Brassica carinata HOM05D002136 ORTHO05D002145 3.7e-30 137.1 296 36.5
TAR625G1124 Trochodendron aralioides HOM05D002136 ORTHO05D002145 8.2e-30 136.0 593 28.2
CSS0000642 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 1.4e-29 135.2 223 43.9
AUR62043252 Chenopodium quinoa HOM05D002136 ORTHO05D002145 3.1e-29 134.0 281 37.4
THA.LOC104818119 Tarenaya hassleriana HOM05D002136 ORTHO05D002145 3.1e-29 134.0 560 30.9
Peaxi162Scf00062g00314 Petunia axillaris HOM05D002136 ORTHO05D002145 1.2e-28 132.1 585 29.6
Cpa.g.sc46.142 Carica papaya HOM05D002136 ORTHO05D002145 1.5e-28 131.7 548 31.2
Nitab4.5_0001478g0030 Nicotiana tabacum HOM05D002136 ORTHO05D002145 2.6e-28 131.0 610 27.9
Aa31LG3G13790 Aethionema arabicum HOM05D002136 ORTHO05D002145 2.2e-27 127.9 494 34.0
PGR142G3530 Punica granatum HOM05D002136 ORTHO05D002145 1.2e-25 122.1 561 27.5
Nitab4.5_0002315g0120 Nicotiana tabacum HOM05D002136 ORTHO05D002145 3.0e-24 117.5 204 39.2
Eucgr.C00355 Eucalyptus grandis HOM05D002136 ORTHO05D002145 1.1e-23 115.5 592 25.7
PSO782G3912 Papaver somniferum HOM05D002136 ORTHO05D002145 2.5e-23 114.4 549 27.5
Nitab4.5_0006527g0020 Nicotiana tabacum HOM05D002136 ORTHO05D002145 9.7e-23 112.5 550 28.7
CSS0035282 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 2.8e-22 110.9 97 60.8
CSS0001593 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 4.8e-22 110.2 97 59.8
CSS0036585 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 6.3e-22 109.8 97 60.8
CSS0047757 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 8.2e-22 109.4 97 58.8
CDE12G0918 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 1.1e-21 109.0 233 33.5
HPP92_003753 Vanilla planifolia HOM05D002136 ORTHO05D002145 1.8e-21 108.2 175 40.0
CDE05G2969 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 3.1e-21 107.5 543 28.0
unitig_748.g7199 Utricularia gibba HOM05D002136 ORTHO05D002145 5.3e-21 106.7 286 31.1
Lj9C716T6 Lonicera japonica HOM05D002136 ORTHO05D002145 6.9e-21 106.3 363 34.7
CDE02G0562 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 9.1e-21 105.9 533 28.9
BraA05t22884Z Brassica rapa HOM05D002136 ORTHO05D002145 1.3e-19 102.1 152 41.4
SEGI_31990 Sequoiadendron giganteum HOM05D002136 ORTHO05D002145 2.2e-19 101.3 246 31.7
SEGI_08782 Sequoiadendron giganteum HOM05D002136 ORTHO05D002145 6.5e-19 99.8 269 29.0
CSS0014039 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 2.5e-18 97.8 71 74.6
Zm00001eb177690 Zea mays HOM05D002136 ORTHO05D002145 1.6e-17 95.1 258 31.0
Dinv41387 Davidia involucrata HOM05D002136 ORTHO05D002145 2.7e-17 94.4 472 30.9
Os08g0280600 Oryza sativa ssp. japonica HOM05D002136 ORTHO05D002145 8.8e-16 89.4 226 35.4
ClCG02G017090 Citrullus lanatus HOM05D002136 ORTHO05D002145 1.3e-14 85.5 332 29.8
Nn1g06481 Nelumbo nucifera HOM05D002136 ORTHO05D002145 1.8e-13 81.6 60 66.7
COL.COLO4_18793 Corchorus olitorius HOM05D002136 ORTHO05D002145 9.1e-13 79.3 76 56.6
COL.COLO4_18794 Corchorus olitorius HOM05D002136 ORTHO05D002145 1.5e-12 78.6 325 32.3
Lj7P457T37 Lonicera japonica HOM05D002136 ORTHO05D002145 2.7e-09 67.8 295 32.2
ATR0602G242 Amborella trichopoda HOM05D002136 ORTHO05D002145 6.1e-09 66.6 217 27.6
Pp3c4_8810 Physcomitrium patens HOM05D002136 ORTHO05D002145 8.0e-09 66.2 270 25.9
Haze_13224 Corylus avellana HOM05D002136 ORTHO05D002145 1.4e-08 65.5 252 29.0
Hma1.2p1_0022F.1_g014630 Hydrangea macrophylla HOM05D029078 ORTHO05D025738 4.0e-08 63.9 73 53.4
Hma1.2p1_0178F.1_g078555 Hydrangea macrophylla HOM05D029078 ORTHO05D025738 4.0e-08 63.9 73 53.4
VMungo1080G0383 Vigna mungo HOM05D002136 ORTHO05D002145 5.2e-08 63.5 280 25.4
FAN14G1013 Fragaria x ananassa HOM05D002136 ORTHO05D002145 6.7e-08 63.2 259 27.8
Sopen07g001310 Solanum pennellii HOM05D002136 ORTHO05D002145 8.8e-08 62.8 65 52.3
FAN02G1860 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.1e-07 62.4 279 28.0
FvH4_6g26620 Fragaria vesca HOM05D002136 ORTHO05D002145 2.0e-07 61.6 130 35.4
Prupe.3G132900 Prunus persica HOM05D002136 ORTHO05D002145 2.6e-07 61.2 123 31.7
TPR.G6453 Trifolium pratense HOM05D002136 ORTHO05D002145 2.6e-07 61.2 227 27.8
COL.COLO4_20523 Corchorus olitorius HOM05D002136 ORTHO05D002145 3.3e-07 60.8 89 41.6
AUR62038980 Chenopodium quinoa HOM05D002136 ORTHO05D002145 4.4e-07 60.5 254 27.6
FAN09G2941 Fragaria x ananassa HOM05D002136 ORTHO05D002145 5.7e-07 60.1 127 35.4
MD09G1242900 Malus domestica HOM05D002136 ORTHO05D002145 5.7e-07 60.1 119 32.8
Phvul.005G101200 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 5.7e-07 60.1 228 29.4
CDE10G1003 Ceratophyllum demersum HOM05D002136 ORTHO05D002145 7.4e-07 59.7 251 24.3
Nn1g06431 Nelumbo nucifera HOM05D002136 ORTHO05D002145 7.4e-07 59.7 110 34.5
Glyma.12G206000 Glycine max HOM05D002136 ORTHO05D002145 9.7e-07 59.3 137 29.9
Lj3g0024162 Lotus japonicus HOM05D002136 ORTHO05D002145 9.7e-07 59.3 286 25.5
arahy.Tifrunner.gnm1.ann1.M4PPZI Arachis hypogaea HOM05D002136 ORTHO05D002145 1.3e-06 58.9 235 23.8
AL3G53650 Arabidopsis lyrata HOM05D002136 ORTHO05D002145 1.7e-06 58.5 241 25.3
Ciclev10015408m.g Citrus clementina HOM05D002136 ORTHO05D002145 2.2e-06 58.2 63 42.9
Hma1.2p1_1764F.1_g301410 Hydrangea macrophylla HOM05D029078 ORTHO05D025738 2.8e-06 57.8 106 38.7
Nn1g04212 Nelumbo nucifera HOM05D002136 ORTHO05D002145 2.8e-06 57.8 60 46.7
RcHm_v2.0_Chr2g0127351 Rosa chinensis HOM05D002136 ORTHO05D002145 2.8e-06 57.8 189 28.0
SMO356G0105 Selaginella moellendorffii HOM05D002136 ORTHO05D002145 2.8e-06 57.8 204 26.5
HanXRQChr17g0541741 Helianthus annuus HOM05D002136 ORTHO05D002145 3.7e-06 57.4 228 25.4
Lalb_Chr03g0029601 Lupinus albus HOM05D002136 ORTHO05D002145 3.7e-06 57.4 67 41.8
Lalb_Chr14g0367101 Lupinus albus HOM05D002136 ORTHO05D002145 3.7e-06 57.4 319 25.4
Sabra17G0011500 Salix brachista HOM05D002136 ORTHO05D002145 4.8e-06 57.0 68 42.6
CAN.G209.16 Capsicum annuum HOM05D002136 ORTHO05D002145 6.3e-06 56.6 58 48.3
Oeu022447.1 Olea europaea HOM05D002136 ORTHO05D002145 6.3e-06 56.6 234 25.2
Ah.04g160440 Amaranthus hybridus HOM05D002136 ORTHO05D002145 8.2e-06 56.2 93 36.6
Lsat_1_v5_gn_3_38820 Lactuca sativa HOM05D002136 ORTHO05D002145 8.2e-06 56.2 264 24.2
Nitab4.5_0003076g0050 Nicotiana tabacum HOM05D002136 ORTHO05D002145 8.2e-06 56.2 68 39.7
Pp3c12_15930 Physcomitrium patens HOM05D002136 ORTHO05D002145 8.2e-06 56.2 215 28.4


User provided reference genes

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