Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 0.0e+00 1529.6 769 100.0
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 0.0e+00 1317.8 781 87.1
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 0.0e+00 1269.6 782 82.9
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 0.0e+00 1087.0 799 73.8
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 5.2e-310 1067.4 774 68.6
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 4.4e-309 1064.3 790 66.6
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 7.5e-309 1063.5 782 68.8
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 7.0e-307 1057.0 780 67.6
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 1.0e-305 1053.1 782 67.8
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 3.1e-302 1041.6 775 67.4
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 8.9e-302 1040.0 783 67.2
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 3.2e-299 1031.6 788 65.6
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 1.5e-296 1022.7 773 66.0
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.5e-296 1021.9 773 65.8
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.1e-295 1016.9 775 65.5
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 8.1e-295 1016.9 775 65.5
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-294 1016.5 775 65.5
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.5e-293 1012.7 767 66.1
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 3.4e-293 1011.5 782 65.1
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 9.8e-293 1010.0 768 65.4
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 2.9e-292 1008.4 781 65.8
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 4.9e-292 1007.7 776 65.3
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 6.4e-292 1007.3 782 65.6
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 1.1e-291 1006.5 782 64.7
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 9.2e-291 1003.4 782 64.7
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 1.1e-288 996.5 766 66.2
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.8e-287 991.9 783 64.6
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 8.1e-287 990.3 783 64.5
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 2.0e-285 985.7 775 63.7
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 4.1e-283 978.0 781 63.0
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.6e-282 974.5 812 62.8
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 2.5e-280 968.8 778 64.8
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 1.6e-279 966.1 805 62.1
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 1.4e-278 963.0 762 63.4
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 1.4e-278 963.0 762 63.4
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 2.0e-277 959.1 761 63.6
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 3.4e-277 958.4 776 62.6
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 2.2e-276 955.7 781 61.8
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 3.8e-276 954.9 782 62.3
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 1.6e-274 949.5 782 62.5
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 6.0e-274 947.6 762 63.4
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 1.7e-273 946.0 739 64.7
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 1.5e-272 943.0 783 61.8
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 4.3e-272 941.4 784 61.9
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 4.3e-272 941.4 783 59.4
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 1.3e-271 939.9 766 62.3
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 8.1e-271 937.2 761 62.2
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 1.4e-270 936.4 761 61.2
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 5.3e-270 934.5 782 60.2
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 1.2e-269 933.3 757 63.0
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 1.5e-269 932.9 782 60.2
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 2.0e-269 932.6 765 61.7
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 4.5e-269 931.4 762 63.3
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 2.4e-267 925.6 775 61.0
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 5.4e-267 924.5 773 61.1
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 1.2e-266 923.3 753 61.9
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.6e-266 922.9 741 63.0
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.8e-265 919.5 786 59.7
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 3.0e-265 918.7 771 61.1
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 2.1e-263 912.5 754 62.1
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 1.1e-262 910.2 766 60.4
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 2.4e-262 909.1 754 61.9
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 5.8e-261 904.4 783 60.3
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 8.4e-260 900.6 784 59.2
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 1.1e-259 900.2 789 60.2
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 1.4e-259 899.8 783 59.8
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 4.8e-255 884.8 745 60.1
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 3.5e-250 868.6 782 59.2
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 3.0e-249 865.5 763 60.4
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 3.7e-247 858.6 894 52.7
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 2.7e-242 842.4 762 57.2
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.5e-240 836.6 798 55.6
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 3.3e-240 835.5 639 67.3
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.2e-237 827.0 754 59.5
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 1.7e-236 823.2 765 55.6
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 2.9e-236 822.4 764 55.0
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 2.9e-236 822.4 764 55.0
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 2.9e-236 822.4 615 65.5
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 5.0e-236 821.6 765 55.2
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 4.2e-235 818.5 767 55.8
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 2.1e-234 816.2 593 67.6
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 6.1e-234 814.7 765 55.3
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 1.0e-233 813.9 765 55.0
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 1.1e-230 803.9 769 54.1
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 1.4e-230 803.5 763 54.7
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 1.8e-230 803.1 790 54.9
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 5.5e-227 791.6 660 61.5
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 1.4e-225 786.9 677 59.8
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 5.2e-225 785.0 780 52.9
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 5.6e-195 685.3 610 57.4
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 4.0e-193 679.1 622 55.6
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 3.4e-192 676.0 776 48.2
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 7.5e-192 674.9 473 69.8
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 3.3e-179 632.9 473 65.8
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.1e-177 627.9 503 64.0
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 2.0e-168 597.0 521 57.0
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 1.6e-162 577.4 813 40.5
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 6.2e-162 575.5 513 57.5
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 3.1e-161 573.2 505 58.6
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 3.1e-161 573.2 793 41.2
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 9.6e-155 551.6 480 60.0
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 1.1e-153 548.1 506 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 4.2e-142 509.6 684 44.0
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 4.2e-142 509.6 481 55.5
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 4.6e-141 506.1 451 58.8
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 1.3e-135 488.0 381 64.3
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 9.3e-126 455.3 695 42.3
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 8.8e-124 448.7 731 39.1
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 1.7e-122 444.5 828 35.0
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 9.1e-121 438.7 473 52.4
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 1.5e-115 421.4 308 68.8
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.8e-105 387.9 327 59.3
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 8.5e-103 379.0 289 66.4
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 7.2e-102 375.9 420 50.7
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.3e-82 309.7 193 78.8
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 2.4e-73 281.2 247 57.1
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 3.6e-69 267.3 245 58.8
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 9.2e-49 199.5 315 40.6
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 9.0e-44 183.0 143 66.4
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.1e-41 176.0 159 53.5
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 4.6e-40 170.6 119 70.6
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 1.7e-39 168.7 150 55.3
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 1.9e-38 165.2 96 77.1
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 2.6e-35 154.8 174 51.7
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.3e-28 130.6 268 35.8
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 3.4e-27 127.9 564 25.5
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 4.5e-27 127.5 132 51.5
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 1.1e-25 122.9 150 43.3
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 2.5e-25 121.7 632 25.6
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.9e-22 112.1 82 65.9
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.6e-22 110.5 123 52.0
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.0e-20 104.4 84 63.1
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 9.0e-20 103.2 63 76.2
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 3.2e-17 94.7 74 60.8
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 3.2e-17 94.7 115 53.0
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.8e-15 89.0 89 52.8
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.6e-13 82.4 56 69.6
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 2.2e-13 82.0 52 73.1
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.9e-12 77.0 63 58.7
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 3.8e-10 71.2 46 67.4
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.1e-09 69.7 97 41.2
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 1.9e-09 68.9 51 60.8
COL.COLO4_37048 Corchorus olitorius HOM05D005191 ORTHO05D006725 6.7e-07 60.5 40 70.0
COL.COLO4_06980 Corchorus olitorius HOM05D005191 ORTHO05D006725 9.7e-06 56.6 40 62.5


User provided reference genes

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