Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 2.9e-73 278.5 142 100.0
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 6.3e-52 207.6 116 93.1
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 1.4e-51 206.5 116 92.2
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 2.0e-50 202.6 116 90.5
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 7.2e-48 194.1 114 87.7
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 8.5e-33 144.1 119 65.5
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 1.1e-32 143.7 123 61.8
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 1.5e-32 143.3 118 65.3
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 2.1e-31 139.4 119 63.9
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 2.3e-30 136.0 117 61.5
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 4.0e-30 135.2 119 63.0
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 5.2e-30 134.8 117 60.7
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 5.2e-30 134.8 120 56.7
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 1.5e-29 133.3 119 58.0
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 4.4e-29 131.7 120 60.8
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 5.7e-29 131.3 117 60.7
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 9.7e-29 130.6 120 60.8
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 1.3e-28 130.2 117 60.7
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 1.3e-28 130.2 120 58.3
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 2.8e-28 129.0 120 55.0
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 3.7e-28 128.6 117 55.6
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 4.8e-28 128.3 115 60.0
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 8.2e-28 127.5 118 60.2
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 8.2e-28 127.5 119 58.0
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 1.1e-27 127.1 111 61.3
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 1.1e-27 127.1 121 55.4
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 1.4e-27 126.7 118 59.3
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 1.8e-27 126.3 117 54.7
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 1.8e-27 126.3 120 53.3
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.8e-27 126.3 119 56.3
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 2.4e-27 125.9 120 59.2
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.1e-27 125.6 120 59.2
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 4.1e-27 125.2 116 58.6
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 5.3e-27 124.8 117 59.0
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 1.2e-26 123.6 118 57.6
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.2e-26 123.6 118 57.6
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.6e-26 123.2 118 56.8
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 1.6e-26 123.2 119 55.5
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 2.0e-26 122.9 119 55.5
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 2.0e-26 122.9 121 54.5
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 2.0e-26 122.9 120 56.7
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.0e-26 122.9 116 57.8
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.7e-26 122.5 118 57.6
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 3.5e-26 122.1 120 56.7
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 3.5e-26 122.1 120 54.2
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 4.5e-26 121.7 120 52.5
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 7.7e-26 120.9 120 57.5
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 7.7e-26 120.9 120 57.5
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 7.7e-26 120.9 118 55.1
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 2.9e-25 119.0 110 59.1
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 2.9e-25 119.0 118 57.6
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 5.0e-25 118.2 116 57.8
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 8.5e-25 117.5 117 54.7
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 8.5e-25 117.5 122 52.5
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 1.1e-24 117.1 121 54.5
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 2.5e-24 115.9 122 54.9
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 4.2e-24 115.2 121 56.2
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 4.2e-24 115.2 121 53.7
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 4.2e-24 115.2 116 56.9
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 5.5e-24 114.8 111 55.9
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 7.2e-24 114.4 116 53.4
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 7.2e-24 114.4 136 49.3
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 9.4e-24 114.0 116 56.0
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 1.2e-23 113.6 119 56.3
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 2.1e-23 112.8 121 52.9
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.7e-23 112.5 110 55.5
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 3.6e-23 112.1 112 54.5
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 4.7e-23 111.7 116 50.9
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 4.7e-23 111.7 115 52.2
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 6.1e-23 111.3 114 51.8
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 6.1e-23 111.3 114 51.8
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 8.0e-23 110.9 113 53.1
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 8.0e-23 110.9 110 53.6
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.4e-22 110.2 113 51.3
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 1.8e-22 109.8 120 49.2
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 2.3e-22 109.4 148 41.2
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 3.0e-22 109.0 69 75.4
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 3.0e-22 109.0 119 52.9
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 4.0e-22 108.6 109 52.3
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 4.0e-22 108.6 122 50.0
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 6.8e-22 107.8 119 49.6
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 2.0e-21 106.3 109 50.5
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.6e-21 105.9 119 48.7
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 7.5e-21 104.4 118 49.2
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 9.8e-21 104.0 119 49.6
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 9.8e-21 104.0 119 49.6
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 9.8e-21 104.0 114 48.2
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 1.3e-20 103.6 119 49.6
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 2.8e-20 102.4 117 45.3
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 2.8e-20 102.4 117 47.9
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 2.8e-20 102.4 119 45.4
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 2.8e-20 102.4 109 48.6
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 4.8e-20 101.7 109 48.6
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 4.8e-20 101.7 119 46.2
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 6.3e-20 101.3 109 46.8
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 8.3e-20 100.9 119 46.2
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 8.3e-20 100.9 114 49.1
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 1.1e-19 100.5 109 47.7
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 1.1e-19 100.5 117 41.9
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.4e-19 100.1 119 46.2
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 1.4e-19 100.1 122 44.3
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 1.8e-19 99.8 113 50.4
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 1.8e-19 99.8 120 49.2
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 2.4e-19 99.4 111 47.7
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 5.4e-19 98.2 115 47.0
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 5.4e-19 98.2 109 45.9
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 5.4e-19 98.2 114 49.1
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 5.4e-19 98.2 117 46.2
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 7.0e-19 97.8 120 46.7
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 9.1e-19 97.4 119 47.9
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.2e-18 97.1 73 65.8
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 1.6e-18 96.7 113 45.1
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 4.5e-18 95.1 120 43.3
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 4.5e-18 95.1 120 43.3
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 5.9e-18 94.7 113 46.0
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 7.7e-18 94.4 117 45.3
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 1.7e-17 93.2 109 47.7
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 2.3e-17 92.8 109 47.7
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 2.3e-17 92.8 109 47.7
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 2.3e-17 92.8 109 47.7
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 2.3e-17 92.8 109 47.7
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 2.3e-17 92.8 109 47.7
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 2.3e-17 92.8 109 47.7
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 2.3e-17 92.8 109 47.7
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 3.8e-17 92.0 119 42.9
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 3.8e-17 92.0 114 44.7
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 1.1e-16 90.5 109 46.8
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.1e-16 90.5 111 49.5
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 1.5e-16 90.1 65 60.0
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 2.5e-16 89.4 81 51.9
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 5.5e-16 88.2 123 43.1
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 2.1e-15 86.3 123 38.2
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 6.1e-15 84.7 117 41.0
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 6.1e-15 84.7 59 62.7
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 8.0e-15 84.3 116 44.0
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.4e-14 83.6 60 63.3
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 1.4e-14 83.6 58 65.5
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 1.8e-14 83.2 119 43.7
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 2.3e-14 82.8 109 43.1
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 1.5e-13 80.1 117 39.3
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 2.0e-13 79.7 131 42.0
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 9.8e-13 77.4 80 47.5
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 9.8e-13 77.4 122 39.3
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 4.9e-12 75.1 57 61.4
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 6.3e-12 74.7 57 59.6
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 1.4e-11 73.6 141 35.5
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 1.2e-10 70.5 69 46.4
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 3.5e-10 68.9 51 62.7
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 2.3e-09 66.2 48 60.4
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.2e-07 60.5 87 39.1
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 2.1e-07 59.7 42 59.5
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 3.6e-07 58.9 122 38.5


User provided reference genes

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