Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.6e-191 671.4 335 100.0
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 5.4e-171 604.4 331 91.8
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 1.5e-149 533.1 331 81.3
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.9e-108 396.0 335 57.6
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.9e-108 396.0 335 57.9
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 6.1e-106 388.3 343 57.1
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.2e-104 384.0 323 57.6
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 4.4e-104 382.1 330 57.3
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.7e-104 381.7 338 57.7
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 9.8e-104 380.9 334 58.1
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.3e-103 377.9 336 56.0
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.8e-102 376.7 336 57.1
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 2.4e-102 376.3 336 55.7
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 2.7e-101 372.9 337 57.3
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.7e-101 371.3 329 55.3
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 2.3e-100 369.8 337 56.1
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.9e-100 369.4 336 55.1
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 3.8e-100 369.0 326 58.9
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 5.0e-100 368.6 330 57.0
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.2e-99 365.5 329 55.6
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 5.5e-99 365.2 340 55.6
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.1e-98 363.2 328 54.0
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.8e-98 362.8 325 56.0
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 6.1e-98 361.7 330 55.8
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.0e-97 360.9 325 56.3
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-97 360.5 328 54.6
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-97 360.5 328 54.0
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.0e-97 359.0 333 55.3
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.2e-95 353.2 323 55.4
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.8e-94 350.1 318 55.3
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.8e-94 350.1 324 54.6
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.8e-94 350.1 353 52.1
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 5.4e-94 348.6 276 61.6
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 9.2e-94 347.8 327 53.2
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.9e-93 345.1 325 52.9
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.7e-92 343.6 308 55.8
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.3e-92 343.2 335 52.5
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.0e-92 342.0 308 55.5
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-91 340.5 347 51.9
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.8e-90 336.3 306 54.2
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.4e-89 334.0 331 52.9
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 3.0e-89 332.8 344 50.9
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 5.2e-89 332.0 325 51.4
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 5.2e-89 332.0 328 52.7
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 5.2e-89 332.0 335 52.8
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 8.9e-89 331.3 327 53.8
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 8.9e-89 331.3 332 51.2
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.0e-88 330.1 305 55.4
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 2.0e-88 330.1 325 54.2
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.7e-87 327.0 339 48.1
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.9e-87 326.2 302 54.3
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 2.9e-87 326.2 304 56.9
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.7e-87 325.9 323 52.6
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.1e-86 324.3 338 50.9
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.1e-86 324.3 325 52.9
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.4e-86 323.9 303 56.1
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 3.2e-86 322.8 302 53.6
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 3.2e-86 322.8 332 50.6
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.1e-86 322.4 299 55.2
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.2e-85 320.9 321 52.6
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 2.7e-85 319.7 341 51.0
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 3.5e-85 319.3 288 55.6
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 7.8e-85 318.2 302 53.3
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.8e-85 318.2 302 54.6
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.3e-84 317.4 316 51.3
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.3e-84 316.6 334 50.9
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.0e-84 316.2 333 48.9
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 5.0e-84 315.5 302 53.0
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 8.6e-84 314.7 336 49.4
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.6e-84 314.7 316 50.9
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.5e-83 313.9 282 56.0
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 7.3e-83 311.6 337 49.3
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 7.3e-83 311.6 305 50.8
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 3.6e-82 309.3 259 59.5
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.6e-82 309.3 267 56.9
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 6.2e-82 308.5 300 54.3
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 8.0e-82 308.1 307 53.1
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.4e-81 307.4 332 49.4
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.4e-81 307.4 338 48.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-81 307.4 300 54.0
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.4e-81 307.4 322 49.7
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.3e-81 306.6 297 51.9
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.1e-81 306.2 300 54.0
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 6.8e-81 305.1 307 51.8
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 8.9e-81 304.7 259 56.8
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 8.9e-81 304.7 293 53.2
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.5e-80 303.9 335 48.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.0e-80 303.5 311 52.1
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.6e-80 303.1 319 50.2
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 4.4e-80 302.4 306 50.3
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 4.4e-80 302.4 333 47.4
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 7.5e-80 301.6 298 53.4
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 9.8e-80 301.2 306 52.0
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.3e-79 300.8 300 51.3
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.7e-79 300.4 292 53.8
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 2.2e-79 300.1 320 48.1
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-79 299.7 336 47.6
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-79 299.7 331 48.0
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 3.7e-79 299.3 309 52.8
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.9e-79 298.9 340 45.9
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 4.9e-79 298.9 296 50.3
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 4.9e-79 298.9 294 54.1
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 6.4e-79 298.5 300 51.7
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 8.3e-79 298.1 256 55.9
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 8.3e-79 298.1 310 51.3
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 8.3e-79 298.1 321 49.2
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.4e-78 297.4 331 47.7
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.4e-78 297.4 284 54.9
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.4e-78 297.4 292 52.1
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.9e-78 297.0 255 56.5
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.9e-78 297.0 309 51.1
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 2.4e-78 296.6 304 50.0
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.2e-78 296.2 312 50.3
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 4.1e-78 295.8 253 56.5
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 5.4e-78 295.4 308 50.0
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 7.0e-78 295.0 301 50.5
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 7.0e-78 295.0 313 50.8
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.6e-77 293.9 330 45.5
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 2.0e-77 293.5 309 48.9
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 2.7e-77 293.1 339 45.1
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 2.7e-77 293.1 300 50.3
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 1.0e-76 291.2 296 49.3
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.3e-76 290.8 296 48.6
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.3e-76 290.8 309 50.2
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.3e-76 290.0 324 48.8
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.3e-76 290.0 335 47.2
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 3.0e-76 289.7 285 51.6
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 3.0e-76 289.7 285 51.6
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.0e-76 289.7 277 50.2
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 3.9e-76 289.3 287 50.9
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 3.9e-76 289.3 296 51.7
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 3.9e-76 289.3 297 51.2
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.9e-75 287.0 287 50.5
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 3.3e-75 286.2 280 52.9
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 3.3e-75 286.2 280 52.9
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 4.3e-75 285.8 313 48.9
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 2.1e-74 283.5 325 46.8
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.6e-74 282.7 304 49.3
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 4.7e-74 282.3 294 50.7
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 9.2e-70 268.1 248 52.4
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 6.0e-69 265.4 247 53.0
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 7.8e-69 265.0 295 47.1
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 1.7e-68 263.8 257 54.1
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.1e-67 261.2 318 40.3
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 7.3e-67 258.5 312 44.2
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.1e-65 254.6 286 46.5
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 4.0e-65 252.7 363 43.5
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 9.9e-64 248.1 257 47.5
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.7e-63 247.3 242 52.5
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 2.9e-63 246.5 301 43.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 3.0e-60 236.5 260 47.7
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.4e-57 226.9 158 65.8
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 3.1e-57 226.5 242 46.7
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 4.0e-57 226.1 247 47.4
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 4.9e-55 219.2 181 54.7
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 1.1e-51 208.0 159 56.0
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.2e-45 188.0 153 58.8
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.1e-44 182.6 127 66.9
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.1e-42 177.2 220 43.6
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.2e-42 175.6 247 39.7
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 3.4e-40 169.9 200 44.5
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 7.6e-40 168.7 217 44.2
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 8.4e-39 165.2 261 37.9
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 8.7e-36 155.2 282 36.2
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 5.3e-33 146.0 224 39.7
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.6e-29 134.4 138 47.1
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.3e-28 131.3 89 67.4
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 5.1e-28 129.4 127 57.5
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.9e-25 119.0 78 71.8
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 9.0e-25 118.6 92 62.0
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 1.2e-21 108.2 77 64.9
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 4.8e-18 96.3 79 60.8
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.2e-16 91.7 82 51.2
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.5e-16 91.3 121 43.0
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.1e-09 68.6 55 54.5


User provided reference genes

Program Settings