Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 5.8e-155 550.8 274 100.0
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 3.6e-80 302.4 172 90.1
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 1.4e-79 300.4 172 89.0
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 2.3e-79 299.7 172 89.5
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.3e-74 283.9 172 82.0
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 5.0e-74 282.0 172 82.0
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 8.6e-74 281.2 172 81.4
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 8.6e-74 281.2 172 82.0
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 8.6e-74 281.2 172 81.4
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 1.1e-73 280.8 172 82.6
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 3.3e-73 279.3 172 80.2
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 4.3e-73 278.9 171 80.7
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 7.3e-73 278.1 172 80.2
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.2e-72 277.3 172 79.1
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 1.6e-72 276.9 172 78.5
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 1.6e-72 276.9 172 79.7
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 2.8e-72 276.2 171 80.7
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 4.7e-72 275.4 172 79.1
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 6.2e-72 275.0 172 79.1
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 6.2e-72 275.0 178 76.4
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 6.2e-72 275.0 172 79.7
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 6.2e-72 275.0 171 78.4
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 6.2e-72 275.0 172 79.1
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 6.2e-72 275.0 172 79.1
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 6.2e-72 275.0 172 77.9
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 8.1e-72 274.6 172 79.1
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.1e-71 274.2 172 78.5
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.1e-71 274.2 172 80.2
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.1e-71 274.2 172 78.5
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 1.4e-71 273.9 172 79.7
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 2.3e-71 273.1 198 68.2
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 2.3e-71 273.1 172 79.1
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 3.1e-71 272.7 172 80.2
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.1e-71 272.7 172 80.2
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 3.1e-71 272.7 172 78.5
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 4.0e-71 272.3 172 78.5
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 4.0e-71 272.3 172 79.1
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 6.8e-71 271.6 172 77.9
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 6.8e-71 271.6 172 78.5
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 6.8e-71 271.6 179 73.2
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 6.8e-71 271.6 172 78.5
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 6.8e-71 271.6 172 77.3
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 8.9e-71 271.2 172 79.7
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.2e-70 270.8 172 77.9
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 1.2e-70 270.8 172 79.1
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 1.5e-70 270.4 172 77.3
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 1.5e-70 270.4 172 77.3
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.5e-70 270.4 168 79.2
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 2.0e-70 270.0 172 77.3
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 2.6e-70 269.6 172 77.3
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 2.6e-70 269.6 172 79.1
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 3.4e-70 269.2 172 76.7
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 3.4e-70 269.2 172 77.3
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 9.9e-70 267.7 168 78.6
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 9.9e-70 267.7 172 75.6
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 9.9e-70 267.7 172 75.6
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 2.2e-69 266.5 172 76.7
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.2e-69 266.5 172 76.7
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.2e-69 266.5 172 76.2
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.9e-69 266.2 172 75.6
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 2.9e-69 266.2 172 76.7
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 4.9e-69 265.4 172 76.2
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 6.4e-69 265.0 172 75.0
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 8.3e-69 264.6 172 75.0
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.1e-68 264.2 172 75.6
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.1e-68 264.2 172 75.6
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.1e-68 264.2 172 75.6
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.1e-68 264.2 172 75.6
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.4e-68 263.8 172 75.0
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.9e-68 263.5 172 73.8
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 2.4e-68 263.1 172 74.4
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 3.2e-68 262.7 172 73.8
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 4.1e-68 262.3 172 76.2
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 7.1e-68 261.5 174 73.0
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 1.2e-67 260.8 172 75.0
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.6e-67 260.4 166 75.3
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 1.6e-67 260.4 172 73.3
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 2.1e-67 260.0 172 75.0
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 3.5e-67 259.2 165 77.6
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 4.6e-67 258.8 173 75.7
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 7.8e-67 258.1 172 74.4
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 2.3e-66 256.5 172 73.8
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 3.0e-66 256.1 173 73.4
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 3.9e-66 255.8 180 71.1
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 6.6e-66 255.0 172 73.8
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 1.9e-65 253.4 195 67.2
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 3.6e-64 249.2 172 70.3
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 5.2e-63 245.4 172 70.9
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 8.4e-61 238.0 172 66.9
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 2.4e-60 236.5 172 65.1
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 2.3e-58 229.9 172 67.4
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 1.1e-55 221.1 170 61.8
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.4e-55 219.9 172 65.7
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 2.6e-54 216.5 170 61.8
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 4.2e-52 209.1 145 72.4
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 6.0e-51 205.3 185 61.6
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 3.0e-50 203.0 131 75.6
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 1.1e-49 201.1 169 57.4
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.9e-49 200.3 131 73.3
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 2.8e-48 196.4 151 66.9
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.0e-46 190.3 152 65.1
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.9e-44 183.7 129 65.9
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 6.0e-43 178.7 165 56.4
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 9.6e-41 171.4 197 50.8
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 9.6e-41 171.4 197 50.8
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 4.0e-39 166.0 169 47.3
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.0e-39 164.9 106 73.6
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 7.6e-38 161.8 141 61.7
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 3.2e-36 156.4 91 81.3
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.2e-35 154.5 108 70.4
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 2.3e-34 150.2 179 49.2
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 1.4e-31 141.0 127 56.7
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 4.5e-30 136.0 172 41.9
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 2.5e-25 120.2 170 37.6
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.3e-24 117.9 92 63.0
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 4.8e-24 115.9 85 65.9
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.2e-22 111.3 66 80.3
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 2.5e-20 103.6 103 55.3
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 3.0e-18 96.7 56 82.1
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 3.9e-18 96.3 56 85.7
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 3.3e-17 93.2 104 54.8
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 4.3e-17 92.8 46 93.5
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.1e-15 86.7 47 87.2
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.8e-13 79.7 46 76.1
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.2e-06 58.2 34 76.5


User provided reference genes

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