Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 4.3e-225 785.0 642 100.0
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.3e-205 720.3 642 95.3
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 1.2e-203 713.8 642 94.5
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 3.4e-190 669.1 636 91.8
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 9.9e-113 411.8 650 73.5
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 4.9e-112 409.5 648 73.3
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 1.9e-111 407.5 647 73.1
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 1.7e-109 401.0 642 73.7
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 2.3e-109 400.6 658 71.7
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 3.9e-109 399.8 639 74.0
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 5.1e-109 399.4 643 73.4
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 6.6e-109 399.1 647 73.0
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 2.1e-107 394.0 646 74.0
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 2.1e-107 394.0 648 73.3
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 2.8e-107 393.7 642 73.2
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 6.2e-107 392.5 643 72.3
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.1e-103 381.7 644 71.9
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 1.9e-103 380.9 642 72.1
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.2e-102 378.3 643 71.4
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 3.5e-102 376.7 643 70.9
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 1.0e-101 375.2 643 71.7
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.1e-99 367.5 644 71.3
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 5.3e-98 362.8 643 70.6
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 6.9e-98 362.5 662 70.1
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 6.9e-98 362.5 644 70.2
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 9.0e-98 362.1 647 70.6
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 4.5e-97 359.8 656 70.3
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 9.9e-97 358.6 649 70.6
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 3.2e-95 353.6 655 71.8
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.5e-95 352.8 644 70.3
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 7.9e-94 349.0 648 70.2
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.9e-92 344.4 644 69.9
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.3e-91 341.7 644 69.9
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.3e-91 341.7 644 69.3
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 1.6e-91 341.3 647 68.8
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.6e-91 341.3 653 68.9
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.8e-91 340.5 653 68.3
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 3.7e-91 340.1 637 69.4
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.8e-90 337.8 646 69.0
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 3.1e-90 337.0 638 69.1
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 5.3e-90 336.3 638 68.8
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 5.8e-89 332.8 638 68.3
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 4.2e-87 326.6 647 67.9
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 7.1e-87 325.9 647 67.7
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 2.7e-86 323.9 647 67.5
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 1.6e-83 314.7 643 67.0
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 2.8e-83 313.9 642 67.4
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.4e-82 311.6 649 67.5
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 1.5e-81 308.1 661 66.3
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 3.8e-80 303.5 648 67.3
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.4e-79 301.6 582 72.5
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 2.5e-79 300.8 651 65.4
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 5.5e-79 299.7 648 67.0
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 3.6e-78 297.0 650 67.7
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 1.4e-77 295.0 595 70.9
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 3.0e-77 293.9 644 66.8
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 3.0e-77 293.9 644 66.8
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 5.1e-77 293.1 651 67.0
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.5e-76 291.6 652 66.3
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.3e-76 290.4 625 67.5
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 9.7e-76 288.9 637 66.9
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.7e-75 287.0 624 67.1
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 6.3e-75 286.2 654 66.8
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 6.3e-75 286.2 654 66.8
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 1.1e-74 285.4 652 66.6
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 2.4e-74 284.3 644 66.5
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 9.1e-74 282.3 644 67.7
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 7.7e-73 279.3 600 67.8
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 2.2e-72 277.7 625 67.0
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.8e-72 276.9 635 66.0
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.9e-71 274.6 653 54.4
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 5.5e-71 273.1 647 64.9
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.7e-70 270.8 655 64.9
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 3.6e-70 270.4 640 64.8
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 3.9e-69 266.9 650 65.1
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 5.7e-68 263.1 649 64.1
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 9.7e-68 262.3 652 63.8
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 1.3e-67 261.9 648 64.0
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 3.7e-67 260.4 641 65.1
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 4.8e-67 260.0 625 65.9
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.4e-66 258.5 640 64.7
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 2.4e-66 257.7 643 65.0
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 4.5e-65 253.4 643 65.3
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 4.5e-65 253.4 654 60.4
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 5.0e-64 250.0 640 63.9
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 5.0e-64 250.0 620 65.8
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 6.5e-64 249.6 642 64.0
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 6.5e-64 249.6 649 64.7
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.9e-63 248.1 654 63.1
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 1.2e-62 245.4 649 64.3
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.7e-62 244.2 638 63.9
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 8.8e-61 239.2 632 63.4
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.8e-58 231.5 636 45.1
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.1e-58 230.7 632 64.1
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.1e-58 230.7 632 64.1
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 9.1e-58 229.2 647 56.9
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.2e-57 228.8 633 64.9
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 1.6e-57 228.4 654 61.6
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 2.2e-56 224.6 257 51.4
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 6.5e-56 223.0 649 61.8
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 4.2e-55 220.3 652 62.4
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.8e-53 214.9 651 61.3
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 1.2e-52 212.2 644 62.3
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.4e-50 205.3 653 60.3
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 4.1e-50 203.8 260 44.6
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 5.3e-50 203.4 644 60.6
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 7.0e-50 203.0 617 64.8
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.2e-49 202.2 637 62.5
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.6e-49 201.8 244 49.6
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.6e-49 201.8 642 61.5
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 6.5e-48 196.4 639 61.5
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.1e-47 195.7 646 60.4
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 1.1e-47 195.7 639 60.7
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 8.0e-46 189.5 641 61.0
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 8.8e-45 186.0 642 60.9
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.7e-43 181.8 227 78.9
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 2.8e-43 181.0 639 60.4
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 2.4e-42 177.9 633 60.3
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 2.4e-42 177.9 633 60.3
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 9.1e-42 176.0 635 60.9
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 2.5e-39 167.9 633 60.3
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 4.2e-39 167.2 636 56.1
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 5.5e-39 166.8 634 60.3
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 6.3e-35 153.3 255 43.1
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 4.1e-34 150.6 589 62.3
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.7e-32 145.2 642 57.6
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 1.7e-32 145.2 478 53.8
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 5.0e-32 143.7 634 60.9
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 9.5e-31 139.4 651 56.1
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.6e-30 138.7 653 57.0
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 2.8e-30 137.9 450 74.7
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.5e-28 132.1 619 57.4
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 1.5e-28 132.1 644 47.4
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 5.8e-28 130.2 601 60.6
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.9e-26 125.2 641 58.5
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 3.5e-25 120.9 273 34.1
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 6.6e-24 116.7 617 57.5
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 8.6e-24 116.3 242 33.9
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 2.5e-23 114.8 640 55.9
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 3.3e-23 114.4 251 37.5
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 1.2e-22 112.5 624 58.0
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 2.1e-22 111.7 250 36.4
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 1.1e-21 109.4 624 57.9
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.1e-21 109.4 620 48.4
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 1.1e-21 109.4 217 38.2
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.6e-20 104.8 637 57.6
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 3.4e-20 104.4 637 57.0
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.9e-19 100.5 103 59.2
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.9e-19 100.5 609 58.9
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 1.9e-18 98.6 252 34.9
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.4e-18 98.2 617 57.4
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.1e-18 97.4 140 45.7
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 6.0e-17 93.6 448 56.9
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 1.9e-15 88.6 249 31.7
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 3.3e-15 87.8 227 33.9
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.3e-15 87.4 89 60.7
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 5.6e-15 87.0 227 35.2
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 7.3e-15 86.7 149 41.6
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 2.1e-14 85.1 233 32.2
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 8.1e-14 83.2 158 39.2
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.1e-13 82.8 100 49.0
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.3e-13 81.6 127 46.5
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.0e-13 80.9 91 56.0
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 6.8e-13 80.1 233 31.3
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 8.3e-11 73.2 169 36.1
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 7.1e-10 70.1 196 33.2
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 7.1e-10 70.1 152 34.9
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 9.2e-10 69.7 585 44.8
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 9.2e-10 69.7 585 44.8
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 4.6e-09 67.4 149 38.9
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.3e-08 65.9 115 38.3
SMO115G0264 Selaginella moellendorffii HOM05D003963 ORTHO05D004558 2.3e-08 65.1 151 37.1
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 5.1e-08 63.9 134 36.6
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 6.6e-08 63.5 170 34.1
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.5e-07 62.4 109 39.4
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 1.9e-07 62.0 159 33.3
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 3.3e-07 61.2 196 28.1
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 5.6e-07 60.5 198 30.8
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.6e-06 58.9 230 28.7
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 2.8e-06 58.2 173 27.7
Haze_27105 Corylus avellana HOM05D003963 ORTHO05D004558 3.6e-06 57.8 74 51.4
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.7e-06 57.4 133 30.8
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.7e-06 57.4 133 30.8
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 4.7e-06 57.4 148 34.5
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 6.2e-06 57.0 148 30.4
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 8.1e-06 56.6 251 26.7
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 8.1e-06 56.6 118 34.7


User provided reference genes

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