Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 4.1e-254 880.9 455 100.0
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.9e-227 792.3 455 89.5
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 6.4e-223 777.3 455 88.1
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 1.3e-162 577.0 415 73.0
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.1e-153 547.4 412 68.2
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 4.2e-150 535.4 458 62.7
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 9.4e-150 534.3 456 62.7
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 2.1e-149 533.1 458 63.1
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 3.6e-149 532.3 459 63.4
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 1.0e-148 530.8 459 63.8
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.0e-147 526.6 455 62.9
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 3.3e-147 525.8 445 63.8
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 3.3e-147 525.8 445 63.6
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 5.7e-147 525.0 411 67.4
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 4.8e-146 521.9 459 63.2
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.8e-146 521.9 456 62.3
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 8.2e-146 521.2 459 62.5
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 2.6e-144 516.2 418 66.0
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 4.5e-144 515.4 452 61.5
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.9e-144 515.0 456 61.6
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 5.9e-144 515.0 417 64.3
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 3.8e-143 512.3 460 61.3
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 6.5e-143 511.5 436 62.4
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 8.5e-143 511.1 462 60.2
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 1.4e-142 510.4 411 65.2
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 9.4e-142 507.7 393 66.7
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.7e-141 506.1 412 64.6
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 6.1e-141 505.0 412 63.1
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.0e-140 504.2 458 60.5
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 8.8e-140 501.1 448 60.9
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.1e-139 500.7 460 59.6
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 2.0e-139 500.0 396 66.4
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 2.0e-139 500.0 452 59.7
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 2.0e-139 500.0 457 60.8
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 3.3e-139 499.2 438 63.5
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 4.4e-139 498.8 472 58.7
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 5.7e-139 498.4 460 59.6
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 3.7e-138 495.7 451 59.2
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 1.9e-134 483.4 469 57.8
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.7e-133 479.6 412 61.9
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 2.7e-133 479.6 450 59.8
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 4.7e-133 478.8 417 59.5
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 6.1e-133 478.4 444 58.8
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 5.2e-132 475.3 443 59.1
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 3.7e-130 469.2 452 58.6
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 2.7e-128 463.0 453 56.7
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 1.0e-127 461.1 453 56.5
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.0e-127 461.1 453 55.8
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 2.2e-127 459.9 453 56.7
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 2.2e-127 459.9 453 56.7
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 2.2e-127 459.9 415 59.3
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.2e-127 459.9 452 55.8
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 8.5e-127 458.0 457 56.5
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.1e-126 457.6 397 59.2
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.5e-126 457.2 397 59.2
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 3.2e-126 456.1 427 58.1
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 4.2e-126 455.7 452 55.5
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 7.2e-126 454.9 459 55.8
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.7e-125 453.0 459 57.5
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 8.0e-125 451.4 459 57.3
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.0e-124 451.1 456 54.2
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.2e-123 447.6 428 55.4
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 1.2e-123 447.6 465 53.8
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 2.6e-123 446.4 456 55.9
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 1.7e-122 443.7 423 57.4
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 8.3e-122 441.4 400 59.2
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.8e-121 440.3 451 55.4
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 4.1e-121 439.1 415 55.4
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 4.1e-121 439.1 457 55.1
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 7.0e-121 438.3 404 57.9
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.2e-120 437.6 458 55.5
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 2.7e-120 436.4 400 58.0
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 1.0e-119 434.5 456 53.5
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 1.3e-119 434.1 411 56.2
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.9e-119 433.0 446 53.1
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 2.9e-119 433.0 447 55.9
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 5.0e-119 432.2 454 52.4
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 6.5e-119 431.8 393 57.5
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 9.5e-118 427.9 432 53.9
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 2.1e-117 426.8 392 60.7
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.6e-117 426.0 433 53.3
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.1e-117 425.2 434 55.5
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 6.8e-116 421.8 437 53.3
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 6.8e-116 421.8 432 53.9
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 6.8e-116 421.8 436 53.2
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 2.0e-115 420.2 414 56.0
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.6e-115 419.9 403 55.8
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 9.8e-115 417.9 452 52.9
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 3.7e-114 416.0 387 56.8
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 3.7e-114 416.0 334 65.0
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 3.1e-113 412.9 387 56.1
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 1.2e-112 411.0 433 53.1
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 1.2e-112 411.0 433 53.1
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.6e-112 410.6 350 60.6
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 4.3e-110 402.5 349 59.6
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 4.3e-110 402.5 427 53.6
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 1.2e-109 401.0 468 49.4
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 3.6e-109 399.4 454 52.4
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 5.2e-108 395.6 352 60.8
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 1.7e-106 390.6 402 54.7
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 6.4e-106 388.7 423 52.7
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.5e-104 382.9 411 52.6
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 9.2e-97 358.2 292 65.4
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 7.8e-96 355.1 455 48.6
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.0e-91 340.5 459 46.2
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.5e-86 324.3 416 46.9
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 2.8e-85 320.1 344 54.7
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 3.1e-84 316.6 327 55.0
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 2.2e-82 310.5 260 65.0
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 6.0e-80 302.4 417 44.1
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 3.0e-79 300.1 348 50.0
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 1.0e-71 275.0 232 62.9
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 1.3e-71 274.6 401 43.4
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 6.4e-66 255.8 264 54.9
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.9e-65 254.2 446 43.0
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 1.0e-63 248.4 229 60.7
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 2.1e-56 224.2 250 50.4
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 4.3e-54 216.5 418 37.3
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 4.0e-52 209.9 400 36.0
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 4.0e-52 209.9 409 35.2
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 2.5e-49 200.7 401 35.7
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 5.9e-27 126.3 421 28.5
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.0e-23 115.5 111 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.7e-21 108.2 204 35.8
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 3.5e-19 100.5 162 38.3
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 4.2e-17 93.6 419 24.6
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.2e-16 92.0 71 60.6
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.6e-16 91.7 190 34.2
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.8e-12 78.2 158 36.1
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 2.3e-07 61.2 81 43.2


User provided reference genes

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