Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 9.8e-169 596.7 289 100.0
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.0e-117 427.2 258 80.6
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 3.9e-117 425.2 323 68.7
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 9.0e-98 360.9 273 66.7
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 9.0e-98 360.9 243 72.4
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 2.9e-96 355.9 265 64.9
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 6.5e-96 354.8 278 64.7
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 3.2e-95 352.4 273 65.6
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 1.9e-92 343.2 290 59.7
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 4.3e-92 342.0 277 59.9
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 9.7e-92 340.9 278 61.5
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.3e-91 340.5 290 57.9
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 3.7e-91 339.0 272 63.6
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.4e-90 337.0 257 64.2
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 1.8e-90 336.7 272 58.5
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 2.4e-90 336.3 277 59.2
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 2.4e-90 336.3 273 58.2
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 3.4e-89 332.4 279 60.6
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 4.2e-87 325.5 259 61.4
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 7.2e-87 324.7 262 61.8
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 4.6e-86 322.0 285 58.2
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 6.1e-86 321.6 291 56.7
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 1.0e-85 320.9 283 53.7
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 1.4e-85 320.5 269 59.1
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.8e-85 320.1 261 60.2
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 2.3e-85 319.7 274 57.7
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 2.3e-85 319.7 266 59.4
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 3.0e-85 319.3 262 59.9
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 3.9e-85 318.9 279 55.9
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 3.9e-85 318.9 258 60.5
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 3.9e-85 318.9 266 58.3
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 5.1e-85 318.5 261 59.4
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 6.7e-85 318.2 290 56.9
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 6.7e-85 318.2 255 60.8
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 6.7e-85 318.2 258 60.5
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 2.5e-84 316.2 263 59.3
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.7e-84 315.1 251 60.6
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.3e-83 313.9 279 57.3
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 1.3e-83 313.9 281 58.7
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 2.2e-83 313.2 278 56.8
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.8e-82 310.1 251 61.4
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 1.5e-81 307.0 275 55.3
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 2.6e-81 306.2 261 58.6
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 2.6e-81 306.2 261 58.6
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 3.4e-81 305.8 263 58.9
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 3.4e-81 305.8 263 58.9
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.4e-81 305.8 264 57.6
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 4.5e-81 305.4 262 58.8
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.9e-81 305.1 267 57.3
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 2.9e-80 302.8 261 58.2
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 3.8e-80 302.4 261 58.6
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 6.5e-80 301.6 281 55.5
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 1.1e-79 300.8 245 61.6
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.9e-79 300.1 283 53.7
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 2.5e-79 299.7 246 60.6
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.5e-79 299.7 283 53.7
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 4.2e-79 298.9 244 56.6
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 4.2e-79 298.9 252 56.7
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 5.5e-79 298.5 306 50.3
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 7.2e-79 298.1 280 54.3
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 7.2e-79 298.1 264 54.2
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.2e-78 297.4 244 61.5
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.6e-78 297.0 283 53.4
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 2.7e-78 296.2 251 59.8
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 2.7e-78 296.2 251 59.8
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 2.7e-78 296.2 252 57.1
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 4.7e-78 295.4 270 56.7
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 6.1e-78 295.0 265 55.1
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 1.0e-77 294.3 250 57.2
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 3.0e-77 292.7 267 55.4
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 3.0e-77 292.7 290 52.4
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 3.0e-77 292.7 263 54.8
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 2.0e-76 290.0 251 56.6
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 7.4e-76 288.1 260 55.0
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 1.3e-75 287.3 238 57.6
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 1.3e-75 287.3 272 52.9
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 1.7e-75 287.0 279 52.3
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 1.7e-75 287.0 281 53.0
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 2.8e-75 286.2 263 53.6
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 3.7e-75 285.8 259 55.2
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 6.3e-75 285.0 277 50.5
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.4e-74 283.9 269 54.3
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 1.2e-73 280.8 273 52.7
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.0e-73 280.0 282 53.5
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 4.5e-73 278.9 242 56.2
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.0e-72 277.7 282 53.5
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 6.5e-72 275.0 281 52.7
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 8.5e-72 274.6 281 52.7
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.4e-71 273.9 271 52.0
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 4.2e-71 272.3 247 54.3
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 8.0e-70 268.1 236 55.5
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 8.0e-70 268.1 271 50.9
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.0e-69 266.2 272 52.6
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 3.9e-69 265.8 270 51.9
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 1.1e-68 264.2 212 59.9
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 1.5e-68 263.8 215 59.1
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 3.3e-68 262.7 236 53.8
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 1.3e-67 260.8 241 52.3
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 3.1e-66 256.1 243 53.1
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 4.1e-66 255.8 291 49.1
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 7.7e-65 251.5 262 49.6
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 1.5e-63 247.3 257 49.0
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 2.2e-59 233.4 192 58.3
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.2e-59 233.4 260 46.5
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.8e-58 230.3 271 45.4
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.2e-57 227.6 276 47.5
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 2.7e-57 226.5 295 42.4
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 5.0e-56 222.2 218 51.4
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.5e-55 220.7 343 38.8
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.7e-54 216.5 212 52.4
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.7e-54 216.5 212 52.4
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.8e-53 211.5 206 51.5
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.0e-52 210.3 206 51.5
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.3e-51 205.3 216 48.6
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 3.1e-50 203.0 288 38.5
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.4e-50 202.2 252 44.8
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 8.6e-48 194.9 178 50.6
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.5e-47 194.1 192 53.6
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 2.5e-47 193.4 168 58.9
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 2.8e-43 179.9 232 42.2
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 2.5e-39 166.8 191 48.7
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 3.1e-37 159.8 441 28.1
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 5.2e-37 159.1 271 35.4
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 5.8e-36 155.6 155 50.3
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 3.2e-34 149.8 118 61.9
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 1.3e-32 144.4 150 55.3
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 6.6e-32 142.1 318 31.8
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 1.3e-27 127.9 377 27.1
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.7e-27 127.5 165 44.2
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 6.4e-27 125.6 76 75.0
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 1.2e-25 121.3 140 47.9
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 3.0e-24 116.7 153 43.8
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 7.3e-23 112.1 154 43.5
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 4.7e-22 109.4 143 44.8
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 5.2e-21 105.9 156 40.4
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 4.9e-19 99.4 71 63.4
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.9e-18 97.4 51 76.5
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.5e-15 87.8 51 70.6
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.6e-15 85.9 61 63.9
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 3.6e-14 83.2 165 35.2
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.1e-13 81.6 61 54.1
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 3.0e-08 63.5 38 71.1
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 3.0e-08 63.5 38 71.1
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.8e-06 57.0 58 51.7
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 3.6e-06 56.6 37 62.2


User provided reference genes

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