Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.6e-101 372.9 203 100.0
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.2e-88 330.1 205 88.8
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.9e-88 327.8 205 89.8
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 3.3e-78 295.4 204 79.4
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.9e-41 173.3 215 51.2
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 5.5e-41 171.8 210 52.4
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 1.6e-40 170.2 210 52.4
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.8e-39 166.8 209 54.1
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.8e-39 166.8 217 52.1
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 2.3e-39 166.4 212 50.5
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 8.7e-39 164.5 214 48.6
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.1e-38 164.1 216 50.9
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 3.3e-38 162.5 216 48.6
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 5.6e-38 161.8 217 50.2
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.3e-37 160.6 215 49.3
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 6.2e-37 158.3 229 47.2
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.1e-36 157.5 217 51.6
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 1.1e-36 157.5 219 52.5
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 8.4e-34 147.9 213 46.5
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 8.4e-34 147.9 219 47.5
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 4.2e-33 145.6 240 42.9
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 4.2e-33 145.6 215 47.0
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 5.5e-33 145.2 218 45.4
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.2e-32 144.1 209 47.4
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.6e-32 143.7 212 46.7
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.5e-32 142.5 217 44.7
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.5e-32 142.5 217 44.7
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 3.5e-32 142.5 220 50.5
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 4.6e-32 142.1 207 45.4
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.3e-31 140.6 226 43.4
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.8e-31 140.2 216 45.4
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 2.3e-31 139.8 212 46.2
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.0e-31 139.4 215 46.0
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.3e-30 136.0 210 45.7
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.3e-30 136.0 217 44.7
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 5.7e-30 135.2 209 45.5
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 9.6e-30 134.4 208 45.7
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-29 134.0 218 50.0
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.6e-29 133.7 208 46.2
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 4.8e-29 132.1 211 46.0
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.8e-29 132.1 218 49.1
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.8e-29 132.1 218 50.0
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 6.3e-29 131.7 214 44.4
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 8.2e-29 131.3 218 47.2
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 8.2e-29 131.3 210 46.2
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.1e-28 131.0 218 48.6
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.1e-28 131.0 214 43.0
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.4e-28 130.6 212 44.8
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 3.1e-28 129.4 213 47.9
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.1e-28 129.4 222 43.7
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 4.1e-28 129.0 211 42.2
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.9e-28 128.3 229 45.9
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.9e-28 128.3 214 50.0
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.5e-27 127.1 211 50.2
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.5e-27 127.1 213 43.7
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.0e-27 126.7 208 50.0
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.6e-27 126.3 220 47.7
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 2.6e-27 126.3 175 48.6
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 4.5e-27 125.6 219 46.6
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 7.6e-27 124.8 220 47.7
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 7.6e-27 124.8 217 44.7
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.0e-26 124.4 213 44.6
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.3e-26 124.0 219 47.9
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.3e-26 124.0 214 47.2
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.7e-26 123.6 219 42.9
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.2e-26 123.2 164 48.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 2.9e-26 122.9 202 44.1
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.9e-26 122.9 223 48.0
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 3.8e-26 122.5 160 48.1
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 3.8e-26 122.5 202 44.1
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 3.8e-26 122.5 202 44.1
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 6.5e-26 121.7 202 43.6
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 6.5e-26 121.7 202 43.6
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.5e-26 121.7 229 44.5
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 6.5e-26 121.7 228 43.4
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 8.4e-26 121.3 213 46.9
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.1e-25 120.9 218 40.4
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.9e-25 120.2 213 46.9
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 2.5e-25 119.8 207 41.5
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.5e-25 119.8 205 44.4
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.5e-25 119.8 184 45.7
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 2.5e-25 119.8 212 43.9
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.5e-25 119.8 212 41.0
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.2e-25 119.4 207 41.5
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.2e-25 119.4 207 41.5
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 4.2e-25 119.0 212 41.5
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 4.2e-25 119.0 211 49.3
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 5.5e-25 118.6 207 41.5
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 7.2e-25 118.2 206 45.6
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 7.2e-25 118.2 176 51.7
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 7.2e-25 118.2 207 44.9
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 1.2e-24 117.5 204 41.2
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 2.1e-24 116.7 167 46.7
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 2.7e-24 116.3 210 39.0
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.3e-23 114.0 191 41.9
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-23 113.6 210 41.4
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.8e-23 113.6 217 43.3
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.8e-23 113.6 209 43.5
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 3.9e-23 112.5 174 44.8
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 3.9e-23 112.5 213 43.2
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 5.1e-23 112.1 213 41.8
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 5.1e-23 112.1 162 53.7
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.7e-23 111.7 184 45.7
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 8.7e-23 111.3 209 43.5
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-22 110.9 213 41.8
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.1e-22 110.9 216 41.2
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.1e-22 110.9 212 44.8
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-22 110.5 210 41.9
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 3.3e-22 109.4 174 48.9
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 4.3e-22 109.0 173 50.9
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 4.3e-22 109.0 213 40.8
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.6e-21 107.1 178 44.4
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.6e-21 107.1 208 43.3
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 4.8e-21 105.5 210 39.0
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 8.2e-21 104.8 224 38.4
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.1e-20 104.4 210 39.0
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 3.1e-20 102.8 137 49.6
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 4.1e-20 102.4 213 39.0
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.1e-20 102.4 216 42.6
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 5.3e-20 102.1 174 41.4
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 5.3e-20 102.1 180 41.1
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.2e-19 100.9 222 44.1
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.5e-19 100.5 172 39.5
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 3.4e-19 99.4 155 54.2
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 4.5e-19 99.0 183 45.9
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 5.9e-19 98.6 174 47.1
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 7.7e-19 98.2 179 47.5
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 7.7e-19 98.2 177 45.2
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 7.7e-19 98.2 179 47.5
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 7.7e-19 98.2 188 43.6
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.7e-18 97.1 157 46.5
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.8e-18 95.9 128 46.9
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 6.5e-18 95.1 161 44.7
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 3.2e-17 92.8 202 38.1
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.2e-17 92.4 212 39.6
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.6e-16 90.5 140 45.7
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.1e-16 90.1 204 37.3
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 2.7e-16 89.7 168 38.7
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 4.6e-16 89.0 177 41.2
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.8e-15 87.0 217 32.7
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.8e-15 87.0 208 35.6
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 2.3e-15 86.7 209 36.4
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 5.1e-15 85.5 201 43.8
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.0e-14 83.6 207 36.7
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 7.4e-14 81.6 146 41.8
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 9.7e-14 81.3 208 35.6
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 1.3e-13 80.9 206 35.0
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.7e-13 80.5 169 37.9
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 2.8e-13 79.7 163 40.5
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-12 77.8 202 36.1
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.4e-12 76.6 92 53.3
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 3.1e-12 76.3 173 38.2
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.1e-12 75.9 177 37.9
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 9.1e-12 74.7 173 38.7
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 9.1e-12 74.7 116 44.8
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 2.0e-11 73.6 126 42.9
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 4.5e-11 72.4 202 35.6
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 5.9e-11 72.0 127 42.5
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.0e-10 71.2 204 33.8
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 2.2e-10 70.1 122 41.8
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.9e-10 69.7 200 37.5
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 5.0e-10 68.9 120 41.7
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 6.5e-10 68.6 206 35.4
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 5.5e-09 65.5 219 32.0
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.2e-08 64.3 161 36.6
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 3.6e-08 62.8 184 34.2
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 3.0e-07 59.7 126 40.5
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 3.9e-07 59.3 136 43.4
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 8.8e-07 58.2 74 60.8
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.5e-06 57.4 197 32.0
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 2.0e-06 57.0 40 70.0
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 2.0e-06 57.0 102 35.3
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 3.3e-06 56.2 83 50.6
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 4.4e-06 55.8 187 34.2
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 9.7e-06 54.7 159 33.3


User provided reference genes

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