Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G008810 Citrullus lanatus HOM05D001491 ORTHO05D001443 5.4e-67 257.7 145 100.0
ClCG06G008820 Citrullus lanatus HOM05D001491 ORTHO05D001443 2.5e-32 142.5 72 100.0
CsaV3_1G045800 Cucumis sativus L. HOM05D001491 ORTHO05D001443 9.6e-24 114.0 77 77.9
Sed0015938 Sechium edule HOM05D001491 ORTHO05D001443 1.8e-22 109.8 77 72.7
MELO3C024695.2 Cucumis melo HOM05D001491 ORTHO05D001443 2.6e-21 105.9 77 71.4
Prupe.7G225900 Prunus persica HOM05D001491 ORTHO05D001443 9.0e-14 80.9 72 55.6
COL.COLO4_34814 Corchorus olitorius HOM05D001491 ORTHO05D001443 1.2e-13 80.5 80 53.8
QL02p022439 Quercus lobata HOM05D001491 ORTHO05D001443 2.6e-13 79.3 65 56.9
Dinv36665 Davidia involucrata HOM05D001491 ORTHO05D001443 4.5e-13 78.6 77 54.5
MD15G1191300 Malus domestica HOM05D001491 ORTHO05D001443 7.7e-13 77.8 68 55.9
Nn2g11667 Nelumbo nucifera HOM05D001491 ORTHO05D001443 7.7e-13 77.8 68 55.9
CSS0038282 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 1.0e-12 77.4 77 53.2
Thecc.09G106200 Theobroma cacao HOM05D001491 ORTHO05D001443 2.2e-12 76.3 69 59.4
CSS0021011 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 2.9e-12 75.9 77 53.2
GSVIVG01015354001 Vitis vinifera HOM05D001491 ORTHO05D001443 2.9e-12 75.9 55 63.6
Duzib168G1739 Durio zibethinus HOM05D001491 ORTHO05D001443 3.8e-12 75.5 69 58.0
Lj7A656G62 Lonicera japonica HOM05D001491 ORTHO05D001443 5.0e-12 75.1 65 55.4
RcHm_v2.0_Chr6g0259271 Rosa chinensis HOM05D001491 ORTHO05D001443 5.0e-12 75.1 69 56.5
FAN23G1639 Fragaria x ananassa HOM05D001491 ORTHO05D004187 8.5e-12 74.3 65 58.5
Aqoxy7G01567 Aquilegia oxysepala HOM05D001491 ORTHO05D001443 1.1e-11 73.9 68 52.9
FvH4_1g05530 Fragaria vesca HOM05D001491 ORTHO05D001443 1.1e-11 73.9 68 57.4
FAN19G1100 Fragaria x ananassa HOM05D001491 ORTHO05D001443 1.1e-11 73.9 68 57.4
Sabra06G0127000 Salix brachista HOM05D001491 ORTHO05D001443 1.1e-11 73.9 70 55.7
FAN26G3114 Fragaria x ananassa HOM05D001491 ORTHO05D001443 1.4e-11 73.6 78 53.8
FAN28G2105 Fragaria x ananassa HOM05D001491 ORTHO05D001443 1.4e-11 73.6 78 53.8
DCAR_028692 Daucus carota HOM05D001491 ORTHO05D001443 1.9e-11 73.2 72 48.6
MBI04_g05260_MAGBIO Magnolia biondii HOM05D001491 ORTHO05D001443 1.9e-11 73.2 68 48.5
Oeu064909.1 Olea europaea HOM05D001491 ORTHO05D001443 1.9e-11 73.2 65 49.2
ATR0315G051 Amborella trichopoda HOM05D001491 ORTHO05D001443 2.5e-11 72.8 68 51.5
Actinidia32671 Actinidia chinensis HOM05D001491 ORTHO05D001443 3.2e-11 72.4 72 52.8
RcHm_v2.0_Chr2g0091231 Rosa chinensis HOM05D001491 ORTHO05D001443 3.2e-11 72.4 78 53.8
arahy.Tifrunner.gnm1.ann1.AXGS4F Arachis hypogaea HOM05D001491 ORTHO05D001443 5.5e-11 71.6 53 58.5
arahy.Tifrunner.gnm1.ann1.YMUB8G Arachis hypogaea HOM05D001491 ORTHO05D001443 5.5e-11 71.6 53 58.5
TAR383G0535 Trochodendron aralioides HOM05D001491 ORTHO05D001443 7.2e-11 71.2 64 51.6
Oeu015587.1 Olea europaea HOM05D001491 ORTHO05D001443 9.4e-11 70.9 65 49.2
Manes.16G113100 Manihot esculenta HOM05D001491 ORTHO05D001443 1.2e-10 70.5 52 67.3
CiPaw.04G161900 Carya illinoinensis HOM05D001491 ORTHO05D001443 1.6e-10 70.1 69 50.7
Eucgr.C03808 Eucalyptus grandis HOM05D001491 ORTHO05D001443 1.6e-10 70.1 70 47.1
Lj7A656G63 Lonicera japonica HOM05D001491 ORTHO05D001443 1.6e-10 70.1 40 77.5
Potri.006G161538 Populus trichocarpa HOM05D001491 ORTHO05D001443 1.6e-10 70.1 81 45.7
vmacro00632 Vaccinium macrocarpon HOM05D001491 ORTHO05D001443 1.6e-10 70.1 72 50.0
Gohir.D07G007100 Gossypium hirsutum HOM05D001491 ORTHO05D001443 2.1e-10 69.7 67 50.7
Gorai.001G006700 Gossypium raimondii HOM05D001491 ORTHO05D001443 2.1e-10 69.7 67 50.7
Rhsim03G0239700 Rhododendron simsii HOM05D001491 ORTHO05D001443 2.1e-10 69.7 75 49.3
TPR.G24753 Trifolium pratense HOM05D001491 ORTHO05D001443 2.1e-10 69.7 72 47.2
Gohir.A07G005000 Gossypium hirsutum HOM05D001491 ORTHO05D001443 2.7e-10 69.3 67 50.7
Lalb_Chr24g0397451 Lupinus albus HOM05D001491 ORTHO05D001443 2.7e-10 69.3 65 49.2
CDE05G3580 Ceratophyllum demersum HOM05D001491 ORTHO05D001443 4.6e-10 68.6 68 50.0
Glyma.07G083900 Glycine max HOM05D001491 ORTHO05D001443 4.6e-10 68.6 66 48.5
MBI01_g30866_MAGBIO Magnolia biondii HOM05D001491 ORTHO05D001443 4.6e-10 68.6 74 44.6
Eucgr.C01272 Eucalyptus grandis HOM05D001491 ORTHO05D001443 6.1e-10 68.2 52 59.6
Eucgr.L02649 Eucalyptus grandis HOM05D001491 ORTHO05D001443 6.1e-10 68.2 52 59.6
CiPaw.03G228500 Carya illinoinensis HOM05D001491 ORTHO05D001443 7.9e-10 67.8 74 45.9
Haze_25779 Corylus avellana HOM05D001491 ORTHO05D001443 7.9e-10 67.8 78 48.7
Lj2g0007755 Lotus japonicus HOM05D001491 ORTHO05D001443 7.9e-10 67.8 67 43.3
Medtr6g488090 Medicago truncatula HOM05D001491 ORTHO05D001443 1.0e-09 67.4 72 44.4
Medtr6g488030 Medicago truncatula HOM05D001491 ORTHO05D001443 1.8e-09 66.6 72 44.4
THA.LOC104814557 Tarenaya hassleriana HOM05D001491 ORTHO05D001443 1.8e-09 66.6 66 47.0
TAR383G0677 Trochodendron aralioides HOM05D001491 ORTHO05D001443 2.3e-09 66.2 77 48.1
HanXRQChr10g0318731 Helianthus annuus HOM05D001491 ORTHO05D001443 3.0e-09 65.9 51 58.8
vmacro06231 Vaccinium macrocarpon HOM05D001491 ORTHO05D001443 3.0e-09 65.9 71 47.9
CDE05G0702 Ceratophyllum demersum HOM05D001491 ORTHO05D001443 5.1e-09 65.1 68 48.5
Cc06_g10020 Coffea canephora HOM05D001491 ORTHO05D001443 5.1e-09 65.1 67 47.8
TPR.G34914 Trifolium pratense HOM05D001491 ORTHO05D001443 5.1e-09 65.1 71 45.1
Atru.chr7.1379 Acer truncatum HOM05D001491 ORTHO05D001443 6.7e-09 64.7 74 45.9
Glyma.07G083700 Glycine max HOM05D001491 ORTHO05D001443 6.7e-09 64.7 66 47.0
Psat1g044200 Pisum sativum HOM05D001491 ORTHO05D001443 6.7e-09 64.7 67 43.3
TPR.G24752 Trifolium pratense HOM05D001491 ORTHO05D001443 8.8e-09 64.3 66 47.0
Eucgr.C01273 Eucalyptus grandis HOM05D001491 ORTHO05D001443 1.1e-08 63.9 68 48.5
Oeu015586.1 Olea europaea HOM05D001491 ORTHO05D001443 1.1e-08 63.9 68 45.6
Prupe.1G450200 Prunus persica HOM05D001491 ORTHO05D001443 2.0e-08 63.2 72 50.0
C07p56550 Brassica napus HOM05D001491 ORTHO05D001443 2.5e-08 62.8 74 41.9
BolC7t46133H Brassica oleracea HOM05D001491 ORTHO05D001443 2.5e-08 62.8 74 41.9
BcaNung02894 Brassica carinata HOM05D001491 ORTHO05D001443 3.3e-08 62.4 74 41.9
RcHm_v2.0_Chr1g0336711 Rosa chinensis HOM05D001491 ORTHO05D001443 4.3e-08 62.0 70 51.4
SalBow1G4091 Salvia bowleyana HOM05D001491 ORTHO05D001443 4.3e-08 62.0 56 46.4
FvH4_2g35762 Fragaria vesca HOM05D001491 ORTHO05D001443 5.7e-08 61.6 73 45.2
FAN27G2152 Fragaria x ananassa HOM05D001491 ORTHO05D001443 5.7e-08 61.6 69 49.3
SalBow4G3117 Salvia bowleyana HOM05D001491 ORTHO05D001443 7.4e-08 61.2 71 49.3
TPR.G27885 Trifolium pratense HOM05D001491 ORTHO05D001443 7.4e-08 61.2 67 49.3
CiPaw.08G024800 Carya illinoinensis HOM05D001491 ORTHO05D001443 9.7e-08 60.8 68 50.0
AUR62009302 Chenopodium quinoa HOM05D001491 ORTHO05D001443 9.7e-08 60.8 68 41.2
Ca_25546_v3 Cicer arietinum L. HOM05D001491 ORTHO05D001443 9.7e-08 60.8 75 40.0
Lsat_1_v5_gn_5_147860 Lactuca sativa HOM05D001491 ORTHO05D001443 9.7e-08 60.8 51 58.8
RcHm_v2.0_Chr6g0306011 Rosa chinensis HOM05D001491 ORTHO05D001443 9.7e-08 60.8 71 52.1
Manes.16G072200 Manihot esculenta HOM05D001491 ORTHO05D001443 1.3e-07 60.5 66 47.0
SEGI_35757 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 1.7e-07 60.1 68 39.7
PSO566G0220 Papaver somniferum HOM05D001491 ORTHO05D001443 2.2e-07 59.7 81 42.0
Carub.0007s1168 Capsella rubella HOM05D001491 ORTHO05D001443 3.7e-07 58.9 68 39.7
Thhalv10025609m.g Eutrema salsugineum HOM05D001491 ORTHO05D001443 3.7e-07 58.9 68 42.6
Sp7g26890 Schrenkiella parvula HOM05D001491 ORTHO05D001443 3.7e-07 58.9 68 42.6
AL7G23500 Arabidopsis lyrata HOM05D001491 ORTHO05D001443 4.8e-07 58.5 68 41.2
MSTRG.1656 Avicennia marina HOM05D001491 ORTHO05D001443 4.8e-07 58.5 75 42.7
BcaNung00437 Brassica carinata HOM05D001491 ORTHO05D001443 4.8e-07 58.5 68 41.2
CiPaw.08G025000 Carya illinoinensis HOM05D001491 ORTHO05D001443 4.8e-07 58.5 68 50.0
Ca_15603_v3 Cicer arietinum L. HOM05D001491 ORTHO05D001443 4.8e-07 58.5 52 46.2
MD15G1095300 Malus domestica HOM05D001491 ORTHO05D001443 4.8e-07 58.5 55 50.9
VMungo0464G1267 Vigna mungo HOM05D001491 ORTHO05D001443 4.8e-07 58.5 66 40.9
Medtr6g488050 Medicago truncatula HOM05D001491 ORTHO05D001443 6.3e-07 58.2 68 39.7
A03p58540 Brassica napus HOM05D001491 ORTHO05D001443 8.2e-07 57.8 68 42.6
A03p58600 Brassica napus HOM05D001491 ORTHO05D001443 8.2e-07 57.8 68 42.6
BraA03t14914Z Brassica rapa HOM05D001491 ORTHO05D001443 8.2e-07 57.8 68 42.6
BraA03t14920Z Brassica rapa HOM05D001491 ORTHO05D001443 8.2e-07 57.8 68 42.6
CSS0012835 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 8.2e-07 57.8 65 49.2
CSS0031194 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 8.2e-07 57.8 65 49.2
SEGI_21639 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 8.2e-07 57.8 68 38.2
BcaNung01347 Brassica carinata HOM05D001491 ORTHO05D001443 1.1e-06 57.4 68 42.6
BcaNung01352 Brassica carinata HOM05D001491 ORTHO05D001443 1.1e-06 57.4 68 42.6
CSS0010925 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 1.1e-06 57.4 70 45.7
ECA234G4078 Erigeron canadensis HOM05D001491 ORTHO05D004187 1.1e-06 57.4 36 69.4
PSO782G3751 Papaver somniferum HOM05D001491 ORTHO05D001443 1.1e-06 57.4 76 40.8
SEGI_04044 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 1.1e-06 57.4 70 42.9
BcaC09g51671 Brassica carinata HOM05D001491 ORTHO05D001443 1.4e-06 57.0 68 41.2
C01p10560 Brassica napus HOM05D001491 ORTHO05D001443 1.4e-06 57.0 68 41.2
BolC1t01019H Brassica oleracea HOM05D001491 ORTHO05D001443 1.4e-06 57.0 68 41.2
BraA01t00850Z Brassica rapa HOM05D001491 ORTHO05D001443 1.4e-06 57.0 68 42.6
AUR62041717 Chenopodium quinoa HOM05D001491 ORTHO05D001443 1.4e-06 57.0 46 54.3
Os05g0228000 Oryza sativa ssp. japonica HOM05D001491 ORTHO05D001443 1.4e-06 57.0 40 62.5
GSVIVG01035644001 Vitis vinifera HOM05D001491 ORTHO05D001443 1.4e-06 57.0 39 66.7
arahy.Tifrunner.gnm1.ann1.8YLP1I Arachis hypogaea HOM05D001491 ORTHO05D001443 1.8e-06 56.6 56 41.1
FvH4_2g35760 Fragaria vesca HOM05D001491 ORTHO05D001443 1.8e-06 56.6 69 42.0
FAN27G0011 Fragaria x ananassa HOM05D001491 ORTHO05D001443 1.8e-06 56.6 69 42.0
TPR.G7243 Trifolium pratense HOM05D001491 ORTHO05D001443 1.8e-06 56.6 67 40.3
Lj8A587G32 Lonicera japonica HOM05D001491 ORTHO05D001443 2.4e-06 56.2 69 46.4
Psat5g022400 Pisum sativum HOM05D001491 ORTHO05D001443 2.4e-06 56.2 56 41.1
PGR142G3294 Punica granatum HOM05D001491 ORTHO05D001443 2.4e-06 56.2 48 54.2
RcHm_v2.0_Chr6g0306021 Rosa chinensis HOM05D001491 ORTHO05D001443 2.4e-06 56.2 55 49.1
AT4G28940 Arabidopsis thaliana HOM05D001491 ORTHO05D001443 3.1e-06 55.8 68 39.7
BcaNung02897 Brassica carinata HOM05D001491 ORTHO05D001443 3.1e-06 55.8 68 41.2
C07p56540 Brassica napus HOM05D001491 ORTHO05D001443 3.1e-06 55.8 68 41.2
BolC7t46131H Brassica oleracea HOM05D001491 ORTHO05D001443 3.1e-06 55.8 68 41.2
A01p09020 Brassica napus HOM05D001491 ORTHO05D001443 4.1e-06 55.5 68 41.2
Sp1g29010 Schrenkiella parvula HOM05D001491 ORTHO05D001443 4.1e-06 55.5 68 41.2
arahy.Tifrunner.gnm1.ann1.TPCS2D Arachis hypogaea HOM05D001491 ORTHO05D001443 5.3e-06 55.1 52 44.2
FAN24G0002 Fragaria x ananassa HOM05D001491 ORTHO05D001443 6.9e-06 54.7 52 55.8
Gohir.D07G026000 Gossypium hirsutum HOM05D001491 ORTHO05D001443 9.1e-06 54.3 41 56.1
Lsat_1_v5_gn_1_49561 Lactuca sativa HOM05D001491 ORTHO05D001443 9.1e-06 54.3 54 46.3
Medtr3g110172 Medicago truncatula HOM05D001491 ORTHO05D001443 9.1e-06 54.3 52 42.3
Medtr3g110175 Medicago truncatula HOM05D001491 ORTHO05D001443 9.1e-06 54.3 52 42.3


User provided reference genes

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