Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 8.4e-205 716.8 375 100.0
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 3.8e-173 611.7 379 87.6
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.4e-172 609.8 377 87.5
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 6.3e-160 567.8 373 83.9
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 3.3e-153 545.4 378 80.4
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 4.0e-130 468.8 362 69.9
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 2.9e-128 462.6 373 66.5
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 6.4e-128 461.5 359 68.8
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 7.0e-127 458.0 371 68.7
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 2.7e-126 456.1 372 66.7
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 3.5e-126 455.7 353 68.8
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 4.6e-126 455.3 355 69.0
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 7.8e-126 454.5 356 69.4
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 8.6e-125 451.1 350 70.0
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 1.5e-124 450.3 353 68.3
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 1.9e-124 449.9 352 69.0
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.3e-124 449.1 374 66.0
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.5e-124 447.6 369 66.9
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.6e-123 446.8 373 66.0
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 1.6e-123 446.8 363 65.8
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.1e-122 444.1 362 68.5
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.4e-122 443.7 369 66.4
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.1e-122 442.6 353 68.3
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.4e-121 438.7 397 63.0
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 1.1e-119 434.1 365 66.3
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 9.2e-119 431.0 365 64.9
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.6e-118 430.3 379 65.2
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 2.1e-118 429.9 390 63.8
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 2.7e-118 429.5 350 66.9
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.8e-118 427.9 369 64.8
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.0e-117 427.6 367 64.3
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 3.0e-117 426.0 355 65.4
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.5e-116 422.9 356 64.9
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 9.5e-116 421.0 386 60.9
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 1.2e-115 420.6 388 61.1
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 6.2e-115 418.3 373 61.7
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 3.4e-113 412.5 350 63.4
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 5.8e-113 411.8 356 64.0
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-112 409.8 458 53.1
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 2.2e-112 409.8 397 60.5
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.9e-111 406.8 355 61.4
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 3.2e-111 406.0 367 62.1
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 4.1e-111 405.6 352 62.2
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 4.1e-111 405.6 369 61.2
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 7.1e-111 404.8 313 70.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 9.2e-111 404.4 373 59.5
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 1.2e-110 404.1 377 59.9
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.2e-110 404.1 356 61.2
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.7e-110 402.9 369 59.6
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 6.0e-110 401.7 420 56.0
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 6.0e-110 401.7 357 61.6
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 1.7e-109 400.2 374 59.9
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 3.0e-109 399.4 397 58.7
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 8.6e-109 397.9 356 61.0
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.1e-108 397.5 361 59.6
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 3.3e-108 396.0 364 59.1
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.3e-108 395.6 369 60.4
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 5.6e-108 395.2 364 59.1
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 7.3e-108 394.8 355 61.7
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 2.1e-107 393.3 372 57.8
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 2.1e-107 393.3 372 59.1
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 2.8e-107 392.9 372 58.1
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 3.6e-107 392.5 372 59.1
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 3.6e-107 392.5 372 57.8
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 4.7e-107 392.1 372 59.1
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 8.1e-107 391.3 372 58.9
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.4e-106 390.6 362 58.3
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 1.8e-106 390.2 376 57.4
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.8e-106 390.2 351 59.5
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 2.4e-106 389.8 373 57.6
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 2.4e-106 389.8 366 58.7
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 3.1e-106 389.4 372 57.8
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 6.8e-106 388.3 292 71.9
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 3.4e-105 386.0 366 57.7
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 5.8e-105 385.2 402 55.0
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 8.4e-104 381.3 552 45.1
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 1.1e-103 380.9 369 56.4
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.6e-102 377.1 395 54.2
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 1.6e-102 377.1 375 56.5
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.1e-102 376.7 354 57.1
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 6.0e-102 375.2 343 62.1
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 6.0e-102 375.2 364 58.8
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 7.8e-102 374.8 429 50.3
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.0e-101 374.4 471 49.9
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.6e-101 371.7 360 60.0
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 2.8e-99 366.3 292 66.4
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 3.6e-99 365.9 375 56.3
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.1e-98 364.4 362 55.2
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 6.9e-98 361.7 278 69.4
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 2.0e-97 360.1 370 54.3
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.3e-96 357.5 369 54.5
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 6.4e-96 355.1 350 55.7
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.1e-95 354.4 369 53.4
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 9.3e-95 351.3 347 58.2
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 1.2e-94 350.9 352 56.0
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.6e-94 350.5 320 62.2
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 2.7e-94 349.7 294 62.6
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 2.7e-94 349.7 294 62.9
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.7e-94 349.7 338 59.5
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 1.3e-93 347.4 321 62.9
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.0e-93 346.3 338 58.9
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 3.9e-93 345.9 336 57.7
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.5e-92 343.2 319 60.2
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 3.3e-92 342.8 319 59.6
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 9.6e-92 341.3 428 50.0
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 6.2e-91 338.6 331 60.1
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.1e-90 337.8 354 56.2
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 2.4e-90 336.7 352 55.1
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.9e-88 329.7 389 51.9
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 2.7e-86 323.2 271 64.2
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.0e-86 322.0 225 75.1
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 3.7e-83 312.8 277 62.5
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.1e-82 311.2 366 50.8
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 3.2e-79 299.7 362 48.9
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.8e-77 293.9 308 55.8
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 9.0e-74 281.6 336 51.2
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 4.5e-73 279.3 314 51.3
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 5.8e-73 278.9 338 49.7
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.1e-71 274.6 363 47.9
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.5e-71 273.5 362 47.0
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 2.7e-70 270.0 284 54.9
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 8.2e-59 231.9 266 53.0
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 1.4e-58 231.1 166 71.7
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 1.1e-55 221.5 350 42.6
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.1e-55 221.5 161 72.7
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 8.8e-53 211.8 156 69.2
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.0e-52 210.7 205 55.1
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.6e-52 210.3 231 54.5
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.0e-48 198.4 397 35.8
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 2.2e-48 197.2 349 36.4
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.1e-47 194.9 229 52.0
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.7e-46 190.3 172 57.6
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 6.7e-45 185.7 127 72.4
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 7.4e-44 182.2 214 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 9.7e-44 181.8 286 41.3
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 7.7e-41 172.2 335 36.7
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.9e-40 170.2 113 76.1
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.9e-40 170.2 113 76.1
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.6e-38 163.3 137 65.7
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.7e-35 154.5 235 43.4
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 9.1e-34 148.7 279 40.1
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 6.1e-30 136.0 104 64.4
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.1e-26 125.2 151 53.0
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-24 117.9 152 46.1
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.1e-23 115.2 150 48.0
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 6.1e-22 109.4 161 45.3
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.8e-21 107.8 324 31.5
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 2.3e-16 90.9 122 45.9
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.9e-16 90.5 136 41.9
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 8.6e-16 89.0 86 54.7
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 8.3e-11 72.4 67 62.7
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 1.0e-08 65.5 69 53.6
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 1.0e-08 65.5 75 50.7
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 3.9e-08 63.5 265 27.2
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 5.0e-08 63.2 75 49.3
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 1.1e-07 62.0 69 49.3
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 3.3e-07 60.5 45 66.7
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 9.5e-07 58.9 76 48.7


User provided reference genes

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