Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 0.0e+00 1084.7 552 100.0
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 6.2e-289 996.9 575 89.2
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 9.9e-279 963.0 581 86.6
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 1.3e-251 872.8 594 76.9
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 2.3e-251 872.1 577 77.1
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 6.7e-251 870.5 579 78.2
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 5.7e-250 867.5 578 78.4
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.4e-248 862.1 564 77.5
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 4.1e-248 861.3 576 77.8
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.9e-248 860.5 577 76.4
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 2.6e-247 858.6 577 76.1
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 8.5e-246 853.6 577 76.1
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 7.2e-245 850.5 577 76.3
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 8.8e-243 843.6 577 74.7
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 3.3e-242 841.6 575 74.6
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 7.4e-242 840.5 580 74.8
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 2.8e-241 838.6 575 74.3
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 2.8e-241 838.6 577 75.0
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 3.7e-241 838.2 577 75.0
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.1e-240 836.6 577 75.0
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 1.4e-240 836.3 578 74.9
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 1.7e-238 829.3 575 75.0
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.9e-237 825.9 576 72.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.9e-237 825.9 576 72.7
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 4.2e-237 824.7 582 73.5
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 7.2e-237 823.9 577 73.1
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 9.4e-237 823.5 597 71.5
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.2e-236 823.2 579 73.4
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.2e-236 823.2 576 74.0
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.8e-235 819.3 577 73.1
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 2.3e-235 818.9 578 72.5
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 8.8e-235 817.0 576 73.1
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 2.0e-234 815.8 575 72.9
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.2e-233 812.4 575 72.3
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 6.3e-233 810.8 575 72.3
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 6.3e-233 810.8 576 74.0
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.1e-232 810.1 587 71.6
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 7.0e-232 807.4 564 74.1
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 3.5e-231 805.1 563 73.5
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.0e-230 803.5 578 71.3
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 2.9e-230 802.0 555 74.4
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.5e-229 799.7 555 74.1
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 1.9e-229 799.3 575 71.1
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 5.5e-229 797.7 576 71.7
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 7.2e-229 797.3 572 71.2
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.6e-228 796.2 573 71.2
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.6e-228 795.0 580 72.1
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 1.0e-227 793.5 581 70.7
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.8e-227 792.7 576 72.6
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 1.8e-227 792.7 575 71.5
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 2.3e-227 792.3 578 71.3
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 3.0e-227 792.0 568 72.5
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 8.8e-227 790.4 587 70.0
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 1.5e-226 789.6 556 73.0
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 4.4e-226 788.1 623 67.3
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 9.7e-226 786.9 573 70.7
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 4.8e-225 784.6 560 71.4
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.1e-224 783.5 516 77.1
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.4e-224 783.1 556 72.5
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.4e-224 783.1 561 72.7
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 3.1e-224 781.9 573 70.5
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 3.5e-223 778.5 558 72.0
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.3e-222 776.5 582 69.1
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 5.0e-222 774.6 538 73.0
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 6.5e-222 774.2 579 69.1
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.6e-220 769.6 556 72.3
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 8.0e-220 767.3 551 71.5
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 8.0e-220 767.3 692 61.1
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 8.8e-219 763.8 559 69.6
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 8.8e-219 763.8 559 69.6
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 2.8e-217 758.8 562 69.6
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 4.8e-217 758.1 514 73.3
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 4.8e-217 758.1 514 73.3
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 8.3e-217 757.3 575 68.3
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 3.1e-216 755.4 601 65.9
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 5.4e-216 754.6 516 72.9
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 4.5e-215 751.5 576 68.2
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 5.9e-215 751.1 487 77.2
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.3e-214 750.0 488 77.3
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.7e-214 749.6 568 69.4
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 4.2e-213 745.0 546 70.5
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 5.2e-211 738.0 558 69.5
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 8.8e-211 737.3 510 73.7
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 9.8e-210 733.8 520 72.9
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 3.2e-200 702.2 589 64.2
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.0e-199 699.5 516 71.1
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 2.3e-198 696.0 470 75.3
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 3.4e-194 682.2 560 64.6
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 6.4e-193 677.9 492 69.9
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 3.0e-190 669.1 519 67.8
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 5.0e-190 668.3 556 61.5
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 4.3e-189 665.2 561 64.2
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 5.6e-189 664.8 467 72.8
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.2e-188 663.7 509 65.6
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.6e-188 662.1 488 69.5
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 2.2e-185 652.9 483 65.8
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 3.4e-178 629.0 492 66.7
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 9.9e-178 627.5 513 60.0
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 4.6e-175 618.6 544 62.9
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.4e-171 606.3 457 66.3
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.4e-170 602.4 506 60.5
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 3.9e-166 589.0 346 89.9
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 3.6e-164 582.4 455 65.1
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 1.0e-158 564.3 578 56.1
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 1.4e-155 553.9 482 64.7
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.9e-149 533.5 509 54.2
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 7.4e-149 531.6 371 75.7
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 1.2e-146 524.2 511 55.0
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.7e-137 493.8 322 78.9
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 4.1e-131 472.6 322 74.2
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 6.1e-127 458.8 297 79.8
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 4.2e-120 436.0 505 44.6
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 7.9e-119 431.8 301 74.8
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.8e-116 422.5 378 62.4
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.6e-114 417.5 214 94.4
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.0e-113 414.8 447 53.5
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.6e-111 407.5 228 91.7
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 9.8e-101 371.7 259 74.1
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 9.5e-88 328.6 210 75.2
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 9.8e-85 318.5 183 88.5
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 1.3e-84 318.2 183 88.0
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 9.2e-83 312.0 210 71.0
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 5.2e-78 296.2 211 69.2
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 4.3e-72 276.6 486 35.4
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 6.8e-62 242.7 159 71.1
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 6.4e-52 209.5 273 48.4
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-50 204.9 166 65.7
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.0e-49 202.2 243 49.4
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 6.9e-46 189.5 424 32.5
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 6.7e-41 172.9 134 66.4
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 8.1e-39 166.0 89 84.3
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 8.1e-39 166.0 89 84.3
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.2e-37 162.2 152 59.2
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 6.0e-34 149.8 365 31.0
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 2.5e-32 144.4 141 57.4
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 6.0e-26 123.2 150 50.7
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 5.1e-25 120.2 81 72.8
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 6.7e-25 119.8 68 91.2
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 2.5e-24 117.9 66 89.4
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 2.0e-21 108.2 137 46.7
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 1.0e-20 105.9 66 80.3
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 1.0e-20 105.9 87 59.8
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 1.9e-19 101.7 52 90.4
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 2.5e-19 101.3 57 89.5
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 4.6e-18 97.1 54 77.8
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 6.7e-17 93.2 102 53.9
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 6.3e-15 86.7 158 34.8
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.9e-14 83.2 65 69.2
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-13 82.4 85 52.9
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 1.4e-11 75.5 61 63.9
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 2.7e-10 71.2 46 76.1
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 2.6e-08 64.7 75 49.3
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 4.4e-08 63.9 77 41.6
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 3.7e-07 60.8 51 58.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 3.7e-07 60.8 43 67.4
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 2.4e-06 58.2 38 71.1


User provided reference genes

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