Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 3.8e-64 248.1 128 100.0
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 7.4e-60 233.8 128 93.8
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 7.4e-60 233.8 128 93.8
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.9e-47 192.6 126 79.4
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 1.9e-47 192.6 128 79.7
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 9.3e-47 190.3 129 78.3
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.6e-46 189.5 129 78.3
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 2.1e-46 189.1 128 76.6
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 2.7e-46 188.7 127 77.2
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 3.5e-46 188.3 127 76.4
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 4.6e-46 188.0 126 80.2
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 7.9e-46 187.2 126 77.0
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 7.9e-46 187.2 126 77.0
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 7.9e-46 187.2 127 75.6
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 7.9e-46 187.2 127 75.6
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.3e-45 186.4 126 79.4
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.8e-45 186.0 130 75.4
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.8e-45 186.0 127 74.8
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.9e-45 184.9 131 77.1
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 77.3
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 5.1e-45 184.5 128 76.6
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 5.1e-45 184.5 128 76.6
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 8.7e-45 183.7 126 78.6
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 8.7e-45 183.7 130 77.7
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.1e-44 183.3 128 73.4
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.1e-44 183.3 129 75.2
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.1e-44 183.3 129 75.2
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.5e-44 183.0 130 77.7
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.5e-44 183.0 128 76.6
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.9e-44 182.6 134 74.6
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.9e-44 182.6 132 72.0
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.9e-44 182.6 132 72.0
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 1.9e-44 182.6 126 77.8
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 2.5e-44 182.2 129 72.9
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.5e-44 182.2 126 75.4
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 2.5e-44 182.2 129 76.0
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 3.3e-44 181.8 130 73.1
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 3.3e-44 181.8 128 75.8
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 7.4e-44 180.6 130 74.6
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.3e-43 179.9 134 73.1
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 1.3e-43 179.9 131 71.8
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 1.3e-43 179.9 131 71.8
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.3e-43 179.9 131 74.8
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.6e-43 179.5 131 71.0
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 1.6e-43 179.5 128 75.0
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.8e-43 178.7 128 74.2
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.7e-43 178.3 128 74.2
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.7e-43 178.3 128 72.7
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 3.7e-43 178.3 128 75.0
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 3.7e-43 178.3 128 75.0
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 3.7e-43 178.3 128 75.8
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 4.8e-43 177.9 122 73.8
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 4.8e-43 177.9 129 74.4
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 6.3e-43 177.6 131 71.8
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 6.3e-43 177.6 130 74.6
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 6.3e-43 177.6 121 73.6
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 8.2e-43 177.2 130 73.1
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.1e-42 176.8 124 74.2
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.4e-42 176.4 115 78.3
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.4e-42 176.4 131 75.6
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.8e-42 176.0 128 73.4
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 2.4e-42 175.6 130 72.3
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 2.4e-42 175.6 131 71.0
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.4e-42 175.6 128 74.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 3.1e-42 175.3 132 73.5
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 5.3e-42 174.5 118 76.3
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 5.3e-42 174.5 128 75.0
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 5.3e-42 174.5 126 74.6
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 6.9e-42 174.1 128 74.2
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.5e-41 172.9 130 70.8
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.5e-41 172.9 130 70.8
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.5e-41 172.9 130 70.8
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.5e-41 172.9 116 76.7
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.5e-41 172.9 129 75.2
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 3.4e-41 171.8 130 71.5
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 3.4e-41 171.8 124 74.2
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 3.4e-41 171.8 128 74.2
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 7.7e-41 170.6 128 71.1
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.0e-40 170.2 130 74.6
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.0e-40 170.2 134 72.4
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 130 73.1
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.8e-40 168.3 127 73.2
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.8e-40 168.3 127 73.2
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 3.8e-40 168.3 115 76.5
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 5.0e-40 167.9 126 75.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 6.5e-40 167.5 109 79.8
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 6.5e-40 167.5 128 74.2
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.1e-39 166.8 132 69.7
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-39 166.8 127 72.4
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.1e-39 166.8 125 72.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.9e-39 166.0 128 70.3
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.9e-39 166.0 133 72.9
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.5e-39 165.6 125 68.0
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 5.5e-39 164.5 124 71.8
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 7.2e-39 164.1 125 72.0
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.4e-39 163.7 126 73.0
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 9.4e-39 163.7 129 73.6
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.2e-38 163.3 134 70.1
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 1.2e-38 163.3 130 70.8
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.1e-38 162.5 134 67.9
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 2.7e-38 162.2 134 70.1
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.6e-38 161.4 126 72.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.0e-37 160.2 128 69.5
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.0e-37 160.2 129 71.3
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.4e-37 159.8 129 71.3
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.4e-37 159.8 130 70.0
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.8e-37 159.5 128 69.5
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.3e-37 159.1 128 66.4
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 2.3e-37 159.1 96 82.3
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 2.3e-37 159.1 129 70.5
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 3.9e-37 158.3 129 69.8
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.9e-37 158.3 133 69.2
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 3.9e-37 158.3 127 71.7
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.1e-36 156.8 129 69.8
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.1e-36 156.8 129 69.8
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.1e-36 156.8 101 77.2
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.0e-36 156.0 128 66.4
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.5e-36 155.6 96 80.2
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 2.5e-36 155.6 124 69.4
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 3.3e-36 155.2 130 69.2
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.4e-36 154.1 131 66.4
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.4e-36 154.1 131 66.4
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.7e-35 152.9 127 69.3
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 2.2e-35 152.5 104 76.9
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.8e-35 151.4 131 67.9
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.4e-34 149.1 111 71.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.6e-33 145.6 129 65.9
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 7.7e-33 144.1 113 68.1
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.7e-32 142.9 127 61.4
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 5.0e-32 141.4 78 87.2
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.4e-31 139.8 129 63.6
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 7.2e-31 137.5 127 63.8
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.0e-29 133.7 135 55.6
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.3e-29 132.5 76 84.2
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 8.8e-29 130.6 75 84.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.3e-28 128.6 75 82.7
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 2.0e-25 119.4 125 57.6
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 2.0e-25 119.4 114 58.8
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-24 116.3 93 67.7
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.9e-24 115.5 94 66.0
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 8.5e-24 114.0 130 61.5
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.1e-23 113.6 93 65.6
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.9e-23 112.8 67 82.1
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.6e-22 109.8 122 54.9
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 5.7e-20 101.3 98 64.3
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.7e-19 98.6 62 77.4
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.7e-19 98.6 91 61.5
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.4e-18 96.7 83 59.0
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 3.1e-18 95.5 94 57.4
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.0e-16 90.5 46 97.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 5.0e-16 88.2 107 45.8
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 6.5e-16 87.8 72 63.9
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 7.2e-15 84.3 53 75.5
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.5e-12 76.6 68 55.9
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 9.4e-07 57.4 53 58.5


User provided reference genes

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