Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 9.8e-112 407.1 258 100.0
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.5e-104 383.3 256 94.1
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 6.6e-100 367.9 262 89.7
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.1e-89 334.0 233 82.4
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.9e-87 325.9 257 78.2
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.5e-67 260.4 230 70.0
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 5.6e-67 258.5 231 74.9
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 3.6e-66 255.8 231 69.3
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.2e-64 250.8 230 66.1
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 2.0e-64 250.0 229 66.4
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.6e-64 249.6 231 66.2
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.5e-64 248.8 230 65.7
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 5.8e-64 248.4 231 73.2
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 9.9e-64 247.7 231 65.4
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 1.3e-63 247.3 232 68.1
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.7e-63 246.9 231 65.8
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 5.5e-62 241.9 229 66.4
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 2.7e-61 239.6 231 70.1
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 3.5e-61 239.2 242 66.1
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.5e-61 239.2 228 64.9
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.3e-60 237.3 231 66.7
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 2.3e-60 236.5 238 64.7
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 3.9e-60 235.7 231 57.1
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 5.1e-60 235.3 251 62.2
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 6.7e-60 235.0 231 61.0
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.5e-59 233.8 231 63.6
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-59 233.8 228 64.9
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 2.5e-59 233.0 245 61.6
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 5.6e-59 231.9 241 67.2
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 5.6e-59 231.9 235 62.1
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.3e-58 230.7 239 62.8
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 1.3e-58 230.7 228 61.0
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.6e-58 230.3 231 60.6
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 2.1e-58 229.9 241 66.8
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 2.8e-58 229.6 242 68.2
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 3.7e-58 229.2 249 62.2
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 6.2e-58 228.4 231 64.1
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 2.4e-57 226.5 231 62.8
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 3.1e-57 226.1 228 57.5
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 3.1e-57 226.1 231 58.9
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 4.0e-57 225.7 232 68.1
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 5.3e-57 225.3 235 66.4
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 6.9e-57 224.9 230 63.9
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 9.0e-57 224.6 244 62.7
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 9.0e-57 224.6 231 62.8
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 2.6e-56 223.0 235 66.0
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 3.4e-56 222.6 226 60.2
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 7.6e-56 221.5 231 60.6
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.0e-55 221.1 225 60.0
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 4.9e-55 218.8 226 60.6
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.4e-54 217.2 230 63.0
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.9e-54 216.9 230 59.1
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 2.5e-54 216.5 211 67.3
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 2.5e-54 216.5 237 58.6
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 3.2e-54 216.1 225 63.6
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.2e-54 215.7 231 57.1
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 9.3e-54 214.5 225 64.0
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.1e-51 207.6 229 54.6
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.9e-51 206.8 248 53.2
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.3e-51 206.1 234 56.0
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 5.7e-51 205.3 255 52.9
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 1.6e-50 203.8 234 65.4
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.1e-49 201.1 232 55.6
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.1e-49 201.1 232 55.6
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.8e-49 200.3 234 56.0
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.8e-49 200.3 232 55.6
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 2.4e-49 199.9 267 59.9
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.1e-49 199.5 231 58.4
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 5.3e-49 198.7 235 57.9
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 5.3e-49 198.7 233 60.5
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.5e-48 197.2 265 52.5
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 2.0e-48 196.8 233 53.2
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.7e-47 193.7 172 72.1
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 1.7e-47 193.7 236 58.5
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 1.1e-46 191.0 230 53.5
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 4.2e-46 189.1 255 53.7
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 7.2e-46 188.3 240 57.5
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 4.6e-45 185.7 263 49.0
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.8e-44 183.7 248 52.0
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 3.0e-44 183.0 257 56.0
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.1e-43 181.0 248 56.9
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 5.7e-43 178.7 235 62.6
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 2.2e-42 176.8 238 57.1
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 4.8e-42 175.6 249 59.4
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 8.2e-42 174.9 248 49.6
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.1e-41 174.5 231 55.8
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 2.4e-41 173.3 233 55.8
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 4.1e-41 172.6 188 62.8
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 5.3e-41 172.2 240 55.0
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 9.0e-41 171.4 233 57.1
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 9.0e-41 171.4 237 54.9
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 2.0e-40 170.2 173 54.9
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.6e-40 169.9 204 61.8
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 7.7e-40 168.3 242 57.4
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.0e-39 167.9 242 48.3
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.3e-39 167.5 240 54.2
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 6.5e-39 165.2 236 54.2
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 6.5e-39 165.2 243 56.8
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 8.5e-39 164.9 230 50.9
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-38 164.1 236 56.4
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.4e-38 164.1 236 56.4
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 4.6e-37 159.1 242 56.2
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 6.1e-37 158.7 231 45.0
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-36 157.5 240 50.0
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-35 154.1 200 57.0
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 2.5e-35 153.3 234 47.0
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 4.3e-35 152.5 229 48.0
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 4.3e-35 152.5 213 50.2
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 7.4e-35 151.8 215 49.8
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.3e-34 151.0 181 46.4
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.8e-33 147.1 233 48.5
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.4e-33 146.7 250 50.0
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 2.0e-32 143.7 243 46.9
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 2.6e-32 143.3 201 60.7
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 4.5e-32 142.5 179 52.5
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 1.3e-31 141.0 244 51.2
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 2.2e-31 140.2 243 46.5
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.9e-31 139.8 255 48.2
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 5.0e-31 139.0 248 50.4
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 5.0e-31 139.0 248 50.4
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 6.5e-31 138.7 250 50.0
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 6.5e-31 138.7 250 50.0
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-30 137.1 232 47.8
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 7.2e-30 135.2 236 46.2
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 7.2e-30 135.2 233 47.2
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 1.2e-29 134.4 262 38.5
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 3.6e-29 132.9 237 51.1
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 3.6e-29 132.9 269 44.2
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 6.1e-29 132.1 147 52.4
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 2.4e-25 120.2 250 43.6
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.4e-25 120.2 247 46.2
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 5.9e-24 115.5 247 42.1
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 3.2e-22 109.8 241 45.6
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.0e-20 104.8 149 46.3
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 6.7e-20 102.1 158 42.4
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 1.1e-19 101.3 228 35.1
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 3.3e-19 99.8 232 36.2
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 5.7e-19 99.0 155 41.9
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.9e-14 84.0 101 45.5
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.4e-14 81.6 149 36.2
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 9.4e-14 81.6 44 86.4
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 2.1e-13 80.5 153 36.6
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 8.3e-10 68.6 139 36.0
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 4.5e-08 62.8 106 37.7
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 2.9e-07 60.1 144 34.0
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 2.9e-07 60.1 144 34.7
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 3.8e-07 59.7 144 32.6
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 6.5e-07 58.9 147 36.1
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 8.5e-07 58.5 139 35.3
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.5e-06 57.8 144 32.6
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 1.9e-06 57.4 115 36.5
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 2.5e-06 57.0 144 33.3
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 3.2e-06 56.6 142 33.8
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 4.2e-06 56.2 144 33.3
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 4.2e-06 56.2 144 32.6
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 7.2e-06 55.5 101 39.6
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 7.2e-06 55.5 144 33.3


User provided reference genes

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