Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G005920 Citrullus lanatus HOM05D001233 ORTHO05D044626 1.1e-55 219.5 102 100.0
CsaV3_6G015090 Cucumis sativus L. HOM05D001233 ORTHO05D001233 2.2e-14 82.4 73 53.4
ClCG06G005910 Citrullus lanatus HOM05D001233 ORTHO05D001233 5.4e-13 77.8 73 53.4
MELO3C035180.2 Cucumis melo HOM05D001233 ORTHO05D001233 5.4e-13 77.8 73 52.1
Prupe.3G270200 Prunus persica HOM05D001233 ORTHO05D001233 2.5e-10 68.9 47 66.0
TPR.G4343 Trifolium pratense HOM05D001233 ORTHO05D001233 2.5e-10 68.9 72 47.2
VMungo1383G3015 Vigna mungo HOM05D001233 ORTHO05D001233 9.5e-10 67.0 72 47.2
CANSAT64G0969 Cannabis sativa HOM05D001233 ORTHO05D001233 1.2e-09 66.6 47 61.7
CANSAT64G2092 Cannabis sativa HOM05D001233 ORTHO05D001233 1.2e-09 66.6 47 61.7
Medtr7g009930 Medicago truncatula HOM05D001233 ORTHO05D001233 1.2e-09 66.6 72 45.8
Glyma.18G257700 Glycine max HOM05D001233 ORTHO05D001233 2.1e-09 65.9 93 38.7
Dinv06525 Davidia involucrata HOM05D001233 ORTHO05D001233 2.8e-09 65.5 72 45.8
Phvul.008G042600 Phaseolus vulgaris HOM05D001233 ORTHO05D001233 2.8e-09 65.5 72 44.4
Atru.chr3.99 Acer truncatum HOM05D001233 ORTHO05D001233 3.6e-09 65.1 70 44.3
Atru.chr8.2589 Acer truncatum HOM05D001233 ORTHO05D001233 3.6e-09 65.1 70 44.3
Atru.chr8.2672 Acer truncatum HOM05D001233 ORTHO05D001233 3.6e-09 65.1 70 44.3
MD17G1048800 Malus domestica HOM05D001233 ORTHO05D001233 4.7e-09 64.7 47 63.8
Duzib147G0258 Durio zibethinus HOM05D001233 ORTHO05D001233 6.2e-09 64.3 45 62.2
MELO3C009884.2 Cucumis melo HOM05D001233 ORTHO05D001233 8.0e-09 63.9 48 62.5
Lj1g0004969 Lotus japonicus HOM05D001233 ORTHO05D001233 8.0e-09 63.9 45 64.4
ClCG10G014930 Citrullus lanatus HOM05D001233 ORTHO05D001233 1.1e-08 63.5 48 62.5
CsaV3_3G041600 Cucumis sativus L. HOM05D001233 ORTHO05D001233 1.1e-08 63.5 48 62.5
Rhsim08G0067700 Rhododendron simsii HOM05D001233 ORTHO05D001233 1.1e-08 63.5 47 61.7
Rhsim08G0067800 Rhododendron simsii HOM05D001233 ORTHO05D001233 1.1e-08 63.5 47 61.7
arahy.Tifrunner.gnm1.ann1.MQNW98 Arachis hypogaea HOM05D001233 ORTHO05D001233 1.4e-08 63.2 71 42.3
arahy.Tifrunner.gnm1.ann1.Y3RZ5Q Arachis hypogaea HOM05D001233 ORTHO05D001233 1.4e-08 63.2 71 42.3
Ca_03967_v3 Cicer arietinum L. HOM05D001233 ORTHO05D001233 1.8e-08 62.8 72 43.1
Medtr6g011550 Medicago truncatula HOM05D001233 ORTHO05D001233 1.8e-08 62.8 56 53.6
Oeu060928.1 Olea europaea HOM05D001233 ORTHO05D001233 1.8e-08 62.8 47 61.7
GSVIVG01011370001 Vitis vinifera HOM05D001233 ORTHO05D001233 1.8e-08 62.8 72 43.1
CAN.G206.128 Capsicum annuum HOM05D001233 ORTHO05D001233 2.3e-08 62.4 56 55.4
Sopen02g032500 Solanum pennellii HOM05D001233 ORTHO05D001233 2.3e-08 62.4 55 56.4
TPR.G837 Trifolium pratense HOM05D001233 ORTHO05D044626 2.3e-08 62.4 47 61.7
CANSAT64G2877 Cannabis sativa HOM05D001233 ORTHO05D001233 3.1e-08 62.0 47 59.6
Glyma.09G239800 Glycine max HOM05D001233 ORTHO05D001233 3.1e-08 62.0 98 35.7
Phvul.004G027000 Phaseolus vulgaris HOM05D001233 ORTHO05D001233 3.1e-08 62.0 72 41.7
Thecc.04G099900 Theobroma cacao HOM05D001233 ORTHO05D001233 3.1e-08 62.0 54 55.6
Actinidia02707 Actinidia chinensis HOM05D001233 ORTHO05D001233 4.0e-08 61.6 47 61.7
Rhsim08G0067600 Rhododendron simsii HOM05D001233 ORTHO05D001233 4.0e-08 61.6 47 59.6
Sed0017673 Sechium edule HOM05D001233 ORTHO05D001233 4.0e-08 61.6 46 60.9
GSVIVG01011365001 Vitis vinifera HOM05D001233 ORTHO05D001233 4.0e-08 61.6 72 41.7
Lj2g0019347 Lotus japonicus HOM05D001233 ORTHO05D001233 5.2e-08 61.2 56 51.8
Solyc02g087770.3 Solanum lycopersicum HOM05D001233 ORTHO05D001233 5.2e-08 61.2 55 54.5
TPR.G4289 Trifolium pratense HOM05D001233 ORTHO05D001233 5.2e-08 61.2 56 51.8
VMungo0464G0879 Vigna mungo HOM05D001233 ORTHO05D001233 5.2e-08 61.2 56 50.0
Psat3g196000 Pisum sativum HOM05D001233 ORTHO05D001233 6.8e-08 60.8 46 60.9
arahy.Tifrunner.gnm1.ann1.54ZV2T Arachis hypogaea HOM05D001233 ORTHO05D001233 8.9e-08 60.5 55 50.9
arahy.Tifrunner.gnm1.ann1.EPH7QX Arachis hypogaea HOM05D001233 ORTHO05D001233 8.9e-08 60.5 55 50.9
arahy.Tifrunner.gnm1.ann1.TWA65T Arachis hypogaea HOM05D001233 ORTHO05D001233 8.9e-08 60.5 55 50.9
Glyma.13G064200 Glycine max HOM05D001233 ORTHO05D001233 1.2e-07 60.1 56 50.0
Potri.017G080200 Populus trichocarpa HOM05D001233 ORTHO05D001233 1.2e-07 60.1 54 53.7
CSS0015640 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 1.5e-07 59.7 72 44.4
Cfa007525 Carpinus fangiana HOM05D001233 ORTHO05D001233 1.5e-07 59.7 47 59.6
COL.COLO4_36111 Corchorus olitorius HOM05D001233 ORTHO05D001233 1.5e-07 59.7 45 55.6
Psat1g075720 Pisum sativum HOM05D001233 ORTHO05D001233 1.5e-07 59.7 56 51.8
Glyma.19G020700 Glycine max HOM05D001233 ORTHO05D001233 2.0e-07 59.3 56 50.0
Sabra17G0071700 Salix brachista HOM05D001233 ORTHO05D001233 2.0e-07 59.3 54 53.7
arahy.Tifrunner.gnm1.ann1.L7YHKS Arachis hypogaea HOM05D001233 ORTHO05D001233 2.6e-07 58.9 56 48.2
Medtr6g011560 Medicago truncatula HOM05D001233 ORTHO05D001233 3.4e-07 58.5 55 50.9
QL06p003735 Quercus lobata HOM05D001233 ORTHO05D001233 3.4e-07 58.5 45 57.8
RcHm_v2.0_Chr2g0168911 Rosa chinensis HOM05D001233 ORTHO05D001233 3.4e-07 58.5 71 43.7
Lj7A442T85 Lonicera japonica HOM05D001233 ORTHO05D001233 4.4e-07 58.2 45 55.6
TAR622G0290 Trochodendron aralioides HOM05D001233 ORTHO05D001233 4.4e-07 58.2 73 39.7
TAR729G0001 Trochodendron aralioides HOM05D001233 ORTHO05D001233 4.4e-07 58.2 73 39.7
EL10Ac5g10524 Beta vulgaris HOM05D001233 ORTHO05D001233 5.8e-07 57.8 70 40.0
CSS0013197 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 5.8e-07 57.8 71 43.7
CSS0019435 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 5.8e-07 57.8 71 43.7
CSS0029878 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 5.8e-07 57.8 71 43.7
CAN.G206.129 Capsicum annuum HOM05D001233 ORTHO05D001233 5.8e-07 57.8 55 52.7
CiPaw.03G029100 Carya illinoinensis HOM05D001233 ORTHO05D001233 5.8e-07 57.8 47 57.4
Manes.15G176900 Manihot esculenta HOM05D001233 ORTHO05D001233 5.8e-07 57.8 53 52.8
Hund02844 Selenicereus undatus HOM05D001233 ORTHO05D001233 5.8e-07 57.8 71 42.3
Hund13230 Selenicereus undatus HOM05D001233 ORTHO05D001233 5.8e-07 57.8 71 42.3
SEGI_22927 Sequoiadendron giganteum HOM05D001233 ORTHO05D001233 5.8e-07 57.8 70 44.3
vmacro18204 Vaccinium macrocarpon HOM05D001233 ORTHO05D001233 5.8e-07 57.8 52 53.8
Ciclev10011989m.g Citrus clementina HOM05D001233 ORTHO05D001233 7.5e-07 57.4 47 57.4
Nn1g02326 Nelumbo nucifera HOM05D001233 ORTHO05D001233 7.5e-07 57.4 71 39.4
PGR083G0890 Punica granatum HOM05D001233 ORTHO05D001233 7.5e-07 57.4 46 56.5
TWI60G0967 Tripterygium wilfordii HOM05D001233 ORTHO05D001233 7.5e-07 57.4 45 57.8
HPP92_006017 Vanilla planifolia HOM05D001233 ORTHO05D001233 7.5e-07 57.4 72 40.3
Ah.10g031440 Amaranthus hybridus HOM05D001233 ORTHO05D001233 9.8e-07 57.0 71 39.4
CAN.G206.130 Capsicum annuum HOM05D001233 ORTHO05D001233 1.7e-06 56.2 55 50.9
CAN.G206.134 Capsicum annuum HOM05D001233 ORTHO05D001233 1.7e-06 56.2 56 46.4
Lj7A399T58 Lonicera japonica HOM05D001233 ORTHO05D001233 1.7e-06 56.2 44 56.8
Prupe.5G188800 Prunus persica HOM05D001233 ORTHO05D001233 1.7e-06 56.2 70 37.1
Solyc02g087810.3 Solanum lycopersicum HOM05D001233 ORTHO05D001233 1.7e-06 56.2 56 46.4
Sopen02g032540 Solanum pennellii HOM05D001233 ORTHO05D001233 1.7e-06 56.2 56 46.4
Atru.chr8.2669 Acer truncatum HOM05D001233 ORTHO05D001233 2.2e-06 55.8 46 54.3
CiPaw.11G041400 Carya illinoinensis HOM05D001233 ORTHO05D001233 2.2e-06 55.8 73 35.6
COL.COLO4_14036 Corchorus olitorius HOM05D001233 ORTHO05D001233 2.2e-06 55.8 73 37.0
DCAR_026067 Daucus carota HOM05D001233 ORTHO05D001233 2.2e-06 55.8 73 38.4
Hma1.2p1_0449F.1_g155290 Hydrangea macrophylla HOM05D001233 ORTHO05D001233 2.2e-06 55.8 47 55.3
Lj9C460G7 Lonicera japonica HOM05D001233 ORTHO05D001233 2.2e-06 55.8 72 37.5
Potri.004G129700 Populus trichocarpa HOM05D001233 ORTHO05D001233 2.2e-06 55.8 53 50.9
Sabra17G0071900 Salix brachista HOM05D001233 ORTHO05D001233 2.2e-06 55.8 54 50.0
Sc14g0005970 Simmondsia chinensis HOM05D001233 ORTHO05D001233 2.2e-06 55.8 45 55.6
Atru.chr3.100 Acer truncatum HOM05D001233 ORTHO05D001233 2.9e-06 55.5 46 54.3
Atru.chr8.2588 Acer truncatum HOM05D001233 ORTHO05D001233 2.9e-06 55.5 46 54.3
MSTRG.23953 Avicennia marina HOM05D001233 ORTHO05D001233 2.9e-06 55.5 46 56.5
EL10Ac2g02950 Beta vulgaris HOM05D001233 ORTHO05D001233 2.9e-06 55.5 54 51.9
FvH4_6g49081 Fragaria vesca HOM05D001233 ORTHO05D001233 2.9e-06 55.5 45 57.8
FAN14G4863 Fragaria x ananassa HOM05D001233 ORTHO05D001233 2.9e-06 55.5 45 57.8
Gohir.A09G020000 Gossypium hirsutum HOM05D001233 ORTHO05D001233 2.9e-06 55.5 44 50.0
Gohir.D09G019600 Gossypium hirsutum HOM05D001233 ORTHO05D001233 2.9e-06 55.5 44 50.0
Gorai.006G023000 Gossypium raimondii HOM05D001233 ORTHO05D001233 2.9e-06 55.5 44 50.0
HanXRQChr09g0265471 Helianthus annuus HOM05D001233 ORTHO05D001233 2.9e-06 55.5 45 55.6
PSO541G6516 Papaver somniferum HOM05D001233 ORTHO05D001233 2.9e-06 55.5 73 38.4
PSO591G0417 Papaver somniferum HOM05D001233 ORTHO05D001233 2.9e-06 55.5 72 36.1
PSO675G6450 Papaver somniferum HOM05D001233 ORTHO05D001233 2.9e-06 55.5 73 38.4
QL02p081190 Quercus lobata HOM05D001233 ORTHO05D001233 2.9e-06 55.5 46 56.5
Thecc.03G082300 Theobroma cacao HOM05D001233 ORTHO05D001233 2.9e-06 55.5 73 38.4
TAR629G3063 Trochodendron aralioides HOM05D001233 ORTHO05D001233 2.9e-06 55.5 71 36.6
Aqoxy3G00714 Aquilegia oxysepala HOM05D001233 ORTHO05D001233 3.7e-06 55.1 47 57.4
AUR62032311 Chenopodium quinoa HOM05D001233 ORTHO05D001233 3.7e-06 55.1 70 40.0
DCAR_006723 Daucus carota HOM05D001233 ORTHO05D001233 3.7e-06 55.1 73 38.4
Lalb_Chr24g0398161 Lupinus albus HOM05D001233 ORTHO05D001233 3.7e-06 55.1 72 38.9
Sabra17G0071600 Salix brachista HOM05D001233 ORTHO05D001233 3.7e-06 55.1 53 49.1
PGSC0003DMG403001316 Solanum tuberosum HOM05D001233 ORTHO05D001233 3.7e-06 55.1 56 44.6
COL.COLO4_04911 Corchorus olitorius HOM05D001233 ORTHO05D001233 4.9e-06 54.7 72 38.9
ECA232G4212 Erigeron canadensis HOM05D001233 ORTHO05D001233 4.9e-06 54.7 46 56.5
Eucgr.J01219 Eucalyptus grandis HOM05D001233 ORTHO05D001233 4.9e-06 54.7 47 51.1
Oeu062090.2 Olea europaea HOM05D001233 ORTHO05D001233 4.9e-06 54.7 45 51.1
Peaxi162Scf00129g00433 Petunia axillaris HOM05D001233 ORTHO05D001233 4.9e-06 54.7 47 53.2
QL02p081175 Quercus lobata HOM05D001233 ORTHO05D001233 4.9e-06 54.7 51 52.9
vmacro18205 Vaccinium macrocarpon HOM05D001233 ORTHO05D001233 4.9e-06 54.7 56 44.6
AUR62011992 Chenopodium quinoa HOM05D001233 ORTHO05D001233 6.4e-06 54.3 70 40.0
Duzib205G0743 Durio zibethinus HOM05D001233 ORTHO05D001233 6.4e-06 54.3 72 38.9
HanXRQChr15g0487791 Helianthus annuus HOM05D001233 ORTHO05D001233 6.4e-06 54.3 45 55.6
SalBow1G4915 Salvia bowleyana HOM05D001233 ORTHO05D001233 6.4e-06 54.3 47 51.1
Atru.chr8.2673 Acer truncatum HOM05D001233 ORTHO05D001233 8.3e-06 53.9 46 52.2
Actinidia34986 Actinidia chinensis HOM05D001233 ORTHO05D001233 8.3e-06 53.9 75 34.7
ClCG06G016310 Citrullus lanatus HOM05D001233 ORTHO05D001233 8.3e-06 53.9 70 37.1
COL.COLO4_10426 Corchorus olitorius HOM05D001233 ORTHO05D001233 8.3e-06 53.9 45 51.1
MD14G1196700 Malus domestica HOM05D001233 ORTHO05D001233 8.3e-06 53.9 70 37.1
Manes.06G095000 Manihot esculenta HOM05D001233 ORTHO05D001233 8.3e-06 53.9 73 37.0
SGA_v2.0_scaffold59G20671 Striga asiatica HOM05D001233 ORTHO05D001233 8.3e-06 53.9 47 55.3
Thecc.03G055200 Theobroma cacao HOM05D001233 ORTHO05D001233 8.3e-06 53.9 72 38.9
Thecc.03G082100 Theobroma cacao HOM05D001233 ORTHO05D001233 8.3e-06 53.9 73 38.4


User provided reference genes

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